CircRNA Information

General Information
circRNA Basic Information
CircID chr17:4959553|4959781
Strand -
CircType exon
Host Gene ENSG00000091640.6;
Algorism CIRI2;
Sequence TCTTCCCCACTCTGCCGCAGACGCTTCTTGGCTCTGATCTCATTCATAGCCTCTTCAATGGAGCGTGTGTCCCTCTTATTGGCCACGGGCACTAGGGGCAGAGAGGAGGGTAGGGCGGGCCTAGAAATCCGTACCTCAGCCTCCACTGCCCTCCTGCCGCATCCTATGCTCCTCTCCCAGCCACCCCCAGCCGCACTGTGGCCTCACCACAGCCGTAGGTCTTATTGGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:4959553|4959781 hsa-let-7b-5p 0 0 1
chr17:4959553|4959781 hsa-let-7b-3p 0 0 1
chr17:4959553|4959781 hsa-let-7c-5p 0 0 1
chr17:4959553|4959781 hsa-let-7c-3p 0 0 1
chr17:4959553|4959781 hsa-let-7d-5p 0 0 1
chr17:4959553|4959781 hsa-let-7d-3p 0 0 1
chr17:4959553|4959781 hsa-let-7e-5p 0 0 1
chr17:4959553|4959781 hsa-let-7e-3p 0 0 1
chr17:4959553|4959781 hsa-miR-98-5p 0 0 1
chr17:4959553|4959781 hsa-miR-98-3p 0 0 1
chr17:4959553|4959781 hsa-miR-34a-5p 0 0 1
chr17:4959553|4959781 hsa-miR-34a-3p 0 0 1
chr17:4959553|4959781 hsa-let-7g-5p 0 0 1
chr17:4959553|4959781 hsa-let-7g-3p 0 0 1
chr17:4959553|4959781 hsa-let-7i-5p 0 0 1
chr17:4959553|4959781 hsa-let-7i-3p 0 0 1
chr17:4959553|4959781 hsa-miR-136-5p 0 0 1
chr17:4959553|4959781 hsa-miR-136-3p 0 0 1
chr17:4959553|4959781 hsa-miR-383-5p 0 0 1
chr17:4959553|4959781 hsa-miR-383-3p 0 0 1
chr17:4959553|4959781 hsa-miR-449a 0 0 1
chr17:4959553|4959781 hsa-miR-202-5p 0 0 1
chr17:4959553|4959781 hsa-miR-202-3p 0 0 1
chr17:4959553|4959781 hsa-miR-519e-5p 0 0 1
chr17:4959553|4959781 hsa-miR-519e-3p 0 0 1
chr17:4959553|4959781 hsa-miR-608 1 1 1
chr17:4959553|4959781 hsa-miR-637 1 0 1
chr17:4959553|4959781 hsa-miR-645 0 0 1
chr17:4959553|4959781 hsa-miR-650 0 0 1
chr17:4959553|4959781 hsa-miR-449b-5p 0 0 1
chr17:4959553|4959781 hsa-miR-449b-3p 0 0 1
chr17:4959553|4959781 hsa-miR-1204 0 0 1
chr17:4959553|4959781 hsa-miR-1265 0 0 1
chr17:4959553|4959781 hsa-miR-491-5p 0 0 1
chr17:4959553|4959781 hsa-miR-485-5p 0 0 1
chr17:4959553|4959781 hsa-miR-324-3p 0 0 1
chr17:4959553|4959781 hsa-miR-515-3p 0 0 1
chr17:4959553|4959781 hsa-miR-34c-5p 0 1 1
chr17:4959553|4959781 hsa-miR-876-5p 0 0 1
chr17:4959553|4959781 hsa-miR-128 0 0 1
chr17:4959553|4959781 hsa-let-7a 0 0 1
chr17:4959553|4959781 hsa-let-7f 0 0 1
chr17:4959553|4959781 hsa-miR-371-3p 0 0 1
chr17:4959553|4959781 hsa-miR-658 1 0 0
chr17:4959553|4959781 hsa-miR-762 1 0 0
chr17:4959553|4959781 hsa-miR-940 1 0 0
chr17:4959553|4959781 hsa-miR-544b 0 1 0
chr17:4959553|4959781 hsa-miR-3141 1 0 0
chr17:4959553|4959781 hsa-miR-3188 1 0 0
chr17:4959553|4959781 hsa-miR-4298 1 0 0
chr17:4959553|4959781 hsa-miR-4290 0 1 0
chr17:4959553|4959781 hsa-miR-3612 1 0 0
chr17:4959553|4959781 hsa-miR-3652 1 0 0
chr17:4959553|4959781 hsa-miR-3929 0 1 0
chr17:4959553|4959781 hsa-miR-4443 0 1 0
chr17:4959553|4959781 hsa-miR-4447 1 0 0
chr17:4959553|4959781 hsa-miR-4466 1 0 0
chr17:4959553|4959781 hsa-miR-4478 0 1 0
chr17:4959553|4959781 hsa-miR-4488 1 0 0
chr17:4959553|4959781 hsa-miR-4505 1 1 0
chr17:4959553|4959781 hsa-miR-4508 1 0 0
chr17:4959553|4959781 hsa-miR-4513 1 0 0
chr17:4959553|4959781 hsa-miR-3960 1 0 0
chr17:4959553|4959781 hsa-miR-4651 0 1 0
chr17:4959553|4959781 hsa-miR-4656 1 0 0
chr17:4959553|4959781 hsa-miR-4688 1 0 0
chr17:4959553|4959781 hsa-miR-4710 1 1 0
chr17:4959553|4959781 hsa-miR-4739 1 0 0
chr17:4959553|4959781 hsa-miR-5787 1 1 0
chr17:4959553|4959781 hsa-miR-6069 1 0 0
chr17:4959553|4959781 hsa-miR-6081 1 0 0
chr17:4959553|4959781 hsa-miR-6085 1 0 0
chr17:4959553|4959781 hsa-miR-6086 1 0 0
chr17:4959553|4959781 hsa-miR-7150 1 0 0
chr17:4959553|4959781 hsa-miR-8072 1 0 0
chr17:4959553|4959781 hsa-miR-8085 0 1 0
chr17:4959553|4959781 hsa-miR-8089 1 0 0
chr17:4959553|4959781 hsa-miR-12114 1 0 0
chr17:4959553|4959781 hsa-miR-12115 1 1 0
chr17:4959553|4959781 hsa-miR-4747-3p 0 1 0
chr17:4959553|4959781 hsa-miR-18a-3p 0 1 0
chr17:4959553|4959781 hsa-miR-6765-5p 1 0 0
chr17:4959553|4959781 hsa-miR-6894-5p 1 0 0
chr17:4959553|4959781 hsa-miR-7114-5p 1 0 0
chr17:4959553|4959781 hsa-miR-6089 1 1 0
chr17:4959553|4959781 hsa-miR-3192-5p 0 1 0
chr17:4959553|4959781 hsa-miR-6880-5p 1 0 0
chr17:4959553|4959781 hsa-miR-7847-3p 1 1 0
chr17:4959553|4959781 hsa-miR-4695-5p 1 0 0
chr17:4959553|4959781 hsa-miR-4709-3p 0 1 0
chr17:4959553|4959781 hsa-miR-4722-5p 1 1 0
chr17:4959553|4959781 hsa-miR-7160-5p 1 1 0
chr17:4959553|4959781 hsa-miR-6820-5p 1 1 0
chr17:4959553|4959781 hsa-miR-6741-5p 1 0 0
chr17:4959553|4959781 hsa-miR-4474-3p 1 0 0
chr17:4959553|4959781 hsa-miR-197-5p 1 0 0
chr17:4959553|4959781 hsa-miR-8069 1 0 0
chr17:4959553|4959781 hsa-miR-6817-3p 0 1 0
chr17:4959553|4959781 hsa-miR-7108-5p 1 0 0
chr17:4959553|4959781 hsa-miR-3180-3p 1 0 0
chr17:4959553|4959781 hsa-miR-6748-5p 1 0 0
chr17:4959553|4959781 hsa-miR-185-3p 1 0 0
chr17:4959553|4959781 hsa-miR-3126-5p 0 1 0
chr17:4959553|4959781 hsa-miR-6782-5p 1 0 0
chr17:4959553|4959781 hsa-miR-7855-5p 0 1 0
chr17:4959553|4959781 hsa-miR-6786-5p 1 0 0
chr17:4959553|4959781 hsa-miR-1226-5p 1 0 0
chr17:4959553|4959781 hsa-miR-4763-5p 0 1 0
chr17:4959553|4959781 hsa-miR-7108-3p 0 1 0
chr17:4959553|4959781 hsa-miR-4707-3p 0 1 0
chr17:4959553|4959781 hsa-miR-885-3p 1 0 0
chr17:4959553|4959781 hsa-miR-4764-5p 0 1 0
chr17:4959553|4959781 hsa-miR-6771-5p 1 0 0
chr17:4959553|4959781 hsa-miR-7111-3p 0 1 0
chr17:4959553|4959781 hsa-miR-4787-5p 1 0 0
chr17:4959553|4959781 hsa-miR-4667-3p 0 1 0
chr17:4959553|4959781 hsa-miR-149-3p 1 0 0
chr17:4959553|4959781 hsa-miR-3616-3p 0 1 0
chr17:4959553|4959781 hsa-miR-6824-5p 1 0 0
chr17:4959553|4959781 hsa-miR-6866-5p 0 1 0
chr17:4959553|4959781 hsa-miR-664b-5p 1 0 0
chr17:4959553|4959781 hsa-miR-6887-3p 0 1 0
chr17:4959553|4959781 hsa-miR-1304-5p 0 1 0
chr17:4959553|4959781 hsa-miR-216a-3p 0 1 0
chr17:4959553|4959781 hsa-miR-7848-3p 0 1 0
chr17:4959553|4959781 hsa-miR-6886-3p 0 1 0
chr17:4959553|4959781 hsa-miR-4649-3p 1 0 0
chr17:4959553|4959781 hsa-miR-1296-3p 1 0 0
chr17:4959553|4959781 hsa-miR-4717-5p 0 1 0
chr17:4959553|4959781 hsa-miR-3162-3p 0 1 0
chr17:4959553|4959781 hsa-miR-10400-5p 1 0 0
chr17:4959553|4959781 hsa-miR-1207-5p 1 1 0
chr17:4959553|4959781 hsa-miR-1233-5p 1 0 0
chr17:4959553|4959781 hsa-miR-4763-3p 1 0 0
chr17:4959553|4959781 hsa-miR-6769b-5p 1 0 0
chr17:4959553|4959781 hsa-miR-6778-5p 1 0 0
chr17:4959553|4959781 hsa-miR-6787-5p 1 0 0
chr17:4959553|4959781 hsa-miR-6812-5p 1 1 0
chr17:4959553|4959781 hsa-miR-6775-5p 1 0 0
chr17:4959553|4959781 hsa-miR-6726-5p 1 0 0
chr17:4959553|4959781 hsa-miR-6743-5p 1 0 0
chr17:4959553|4959781 hsa-miR-6752-5p 1 1 0
chr17:4959553|4959781 hsa-miR-6756-5p 1 0 0
chr17:4959553|4959781 hsa-miR-6769a-5p 1 0 0
chr17:4959553|4959781 hsa-miR-6803-5p 1 1 0
chr17:4959553|4959781 hsa-miR-6813-5p 1 0 0
chr17:4959553|4959781 hsa-miR-6819-5p 1 0 0
chr17:4959553|4959781 hsa-miR-6851-5p 1 0 0
chr17:4959553|4959781 hsa-miR-7110-5p 1 1 0
chr17:4959553|4959781 hsa-miR-1249-5p 1 0 0
chr17:4959553|4959781 hsa-miR-6722-3p 1 0 0
chr17:4959553|4959781 hsa-miR-6751-5p 0 1 0
chr17:4959553|4959781 hsa-miR-6788-5p 0 1 0
chr17:4959553|4959781 hsa-miR-6797-5p 1 0 0
chr17:4959553|4959781 hsa-miR-6879-5p 1 1 0
chr17:4959553|4959781 hsa-miR-7111-5p 1 0 0
chr17:4959553|4959781 hsa-miR-4728-5p 1 1 0
chr17:4959553|4959781 hsa-miR-1237-5p 1 0 0
chr17:4959553|4959781 hsa-miR-328-5p 1 1 0
chr17:4959553|4959781 hsa-miR-4632-5p 1 1 0
chr17:4959553|4959781 hsa-miR-4726-5p 1 0 0
chr17:4959553|4959781 hsa-miR-6729-5p 1 0 0
chr17:4959553|4959781 hsa-miR-6735-5p 0 1 0
chr17:4959553|4959781 hsa-miR-6794-5p 1 0 0
chr17:4959553|4959781 hsa-miR-6846-5p 1 0 0
chr17:4959553|4959781 hsa-miR-6848-5p 1 1 0
chr17:4959553|4959781 hsa-miR-6883-5p 1 0 0
chr17:4959553|4959781 hsa-miR-6831-5p 1 0 0
chr17:4959553|4959781 hsa-miR-6885-5p 1 0 0
chr17:4959553|4959781 hsa-miR-30c-1-3p 0 1 0
chr17:4959553|4959781 hsa-miR-6731-5p 0 1 0
chr17:4959553|4959781 hsa-miR-6856-5p 1 1 0
chr17:4959553|4959781 hsa-miR-7843-5p 1 0 0
chr17:4959553|4959781 hsa-miR-4646-5p 1 0 0
chr17:4959553|4959781 hsa-miR-6785-5p 1 1 0
chr17:4959553|4959781 hsa-miR-6849-5p 1 0 0
chr17:4959553|4959781 hsa-miR-550a-5p 0 1 0
chr17:4959553|4959781 hsa-miR-6529-5p 1 1 0
chr17:4959553|4959781 hsa-miR-3059-5p 0 1 0
chr17:4959553|4959781 hsa-miR-4723-3p 0 1 0
chr17:4959553|4959781 hsa-miR-6769b-3p 0 1 0
chr17:4959553|4959781 hsa-miR-6884-5p 1 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr17:4959553|4959781
ORF Type ORF1
Protein Length 67
Nucleotide Length 201
Protein Sequence MALISFIASSMERVSLLLATGTRGREEGRAGLEIRTSASTALLPHPMLLSQPPPAALWPHHSRRSYW
Nucleotide Sequence TTGGCTCTGATCTCATTCATAGCCTCTTCAATGGAGCGTGTGTCCCTCTTATTGGCCACGGGCACTAGGGGCAGAGAGGAGGGTAGGGCGGGCCTAGAAATCCGTACCTCAGCCTCCACTGCCCTCCTGCCGCATCCTATGCTCCTCTCCCAGCCACCCCCAGCCGCACTGTGGCCTCACCACAGCCGTAGGTCTTATTGG
CircID chr17:4959553|4959781
ORF Type ORF2
Protein Length 28
Nucleotide Length 84
Protein Sequence MPSCRILCSSPSHPQPHCGLTTAVGLIG
Nucleotide Sequence CTGCCCTCCTGCCGCATCCTATGCTCCTCTCCCAGCCACCCCCAGCCGCACTGTGGCCTCACCACAGCCGTAGGTCTTATTGGC
CircID chr17:4959553|4959781
ORF Type ORF3
Protein Length 27
Nucleotide Length 84
Protein Sequence MPQTLLGSDLIHSLFNGACVPLIGHGH
Nucleotide Sequence CTGCCGCAGACGCTTCTTGGCTCTGATCTCATTCATAGCCTCTTCAATGGAGCGTGTGTCCCTCTTATTGGCCACGGGCACTAG
CircID chr17:4959553|4959781
ORF Type ORF4
Protein Length 33
Nucleotide Length 99
Protein Sequence MPLVPVANKRDTRSIEEAMNEIRAKKRLRQSGE
Nucleotide Sequence CTGCCCCTAGTGCCCGTGGCCAATAAGAGGGACACACGCTCCATTGAAGAGGCTATGAATGAGATCAGAGCCAAGAAGCGTCTGCGGCAGAGTGGGGAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab