CircRNA Information

General Information
circRNA Basic Information
CircID chr17:4960420|4960808
Strand +
CircType exon
Host Gene ENSG00000091640.6;
Algorism CIRI2;
Sequence AGAAAGTGGAGTTTCGTAAAAGGGTGAGAACAACTGGAGTGATCAAAGGCAGACTCAGGAAGGACTTCCAATAAGTTAAAATTGGAAGGTTGAGGACTCAGTTTTGCTGAAAATGTCTTGAGAGAGGTGACGCATGGAAGCCAGTGGCTTGGAGGCTGGGGAGGGTGCTGGGGAGGCGTAGAAGGGCCCAGGCTCAGCTAGGGAGAGGGGTACTTGGGTGGAGCCATTGTCTCATATCTGCTTCCTTTCCCCTCTCCCAAGATGGAGAAGGAGGTGTCAGATTTCATTCAAGACAGTGGGCAGATCAAGAAAAAGTTTCAGCCAATGAACAAGATCGAGAGGAGCATACTGTGAGTGTCCCTGGGCTGGGGGAGGAAGGAAATGGGTGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:4960420|4960808 hsa-miR-27a-5p 0 0 1
chr17:4960420|4960808 hsa-miR-27a-3p 0 0 1
chr17:4960420|4960808 hsa-miR-27b-5p 0 0 1
chr17:4960420|4960808 hsa-miR-27b-3p 0 0 1
chr17:4960420|4960808 hsa-miR-144-5p 0 0 1
chr17:4960420|4960808 hsa-miR-144-3p 0 0 1
chr17:4960420|4960808 hsa-miR-136-5p 0 0 1
chr17:4960420|4960808 hsa-miR-136-3p 0 0 1
chr17:4960420|4960808 hsa-miR-346 1 1 1
chr17:4960420|4960808 hsa-miR-431-5p 0 0 1
chr17:4960420|4960808 hsa-miR-431-3p 0 0 1
chr17:4960420|4960808 hsa-miR-526b-5p 0 0 1
chr17:4960420|4960808 hsa-miR-526b-3p 0 0 1
chr17:4960420|4960808 hsa-miR-545-5p 0 0 1
chr17:4960420|4960808 hsa-miR-545-3p 0 0 1
chr17:4960420|4960808 hsa-miR-578 0 0 1
chr17:4960420|4960808 hsa-miR-627-5p 0 0 1
chr17:4960420|4960808 hsa-miR-627-3p 0 0 1
chr17:4960420|4960808 hsa-miR-635 0 0 1
chr17:4960420|4960808 hsa-miR-641 0 0 1
chr17:4960420|4960808 hsa-miR-647 0 0 1
chr17:4960420|4960808 hsa-miR-661 1 1 1
chr17:4960420|4960808 hsa-miR-660-5p 0 0 1
chr17:4960420|4960808 hsa-miR-660-3p 0 0 1
chr17:4960420|4960808 hsa-miR-1323 0 1 1
chr17:4960420|4960808 hsa-miR-892b 0 0 1
chr17:4960420|4960808 hsa-miR-924 0 0 1
chr17:4960420|4960808 hsa-miR-1229-5p 0 0 1
chr17:4960420|4960808 hsa-miR-1229-3p 0 0 1
chr17:4960420|4960808 hsa-miR-1237-5p 0 0 1
chr17:4960420|4960808 hsa-miR-1237-3p 0 0 1
chr17:4960420|4960808 hsa-miR-1200 1 0 1
chr17:4960420|4960808 hsa-miR-1206 0 0 1
chr17:4960420|4960808 hsa-miR-548e-5p 0 0 1
chr17:4960420|4960808 hsa-miR-548e-3p 0 0 1
chr17:4960420|4960808 hsa-miR-1248 1 0 1
chr17:4960420|4960808 hsa-miR-548o-3p 0 0 1
chr17:4960420|4960808 hsa-miR-548p 0 0 1
chr17:4960420|4960808 hsa-miR-1281 1 1 1
chr17:4960420|4960808 hsa-miR-513c-5p 0 0 1
chr17:4960420|4960808 hsa-miR-513c-3p 0 0 1
chr17:4960420|4960808 hsa-miR-548o 0 0 1
chr17:4960420|4960808 hsa-miR-145-5p 0 1 1
chr17:4960420|4960808 hsa-miR-296-5p 0 0 1
chr17:4960420|4960808 hsa-miR-508-5p 0 1 1
chr17:4960420|4960808 hsa-miR-361-3p 0 0 1
chr17:4960420|4960808 hsa-miR-324-3p 0 0 1
chr17:4960420|4960808 hsa-miR-483-3p 0 0 1
chr17:4960420|4960808 hsa-miR-515-5p 0 0 1
chr17:4960420|4960808 hsa-miR-548a-3p 0 0 1
chr17:4960420|4960808 hsa-miR-590-3p 0 0 1
chr17:4960420|4960808 hsa-miR-128 0 0 1
chr17:4960420|4960808 hsa-miR-548f 0 0 1
chr17:4960420|4960808 hsa-miR-1826 0 0 1
chr17:4960420|4960808 hsa-miR-326 1 0 0
chr17:4960420|4960808 hsa-miR-611 1 0 0
chr17:4960420|4960808 hsa-miR-3153 0 1 0
chr17:4960420|4960808 hsa-miR-3183 0 1 0
chr17:4960420|4960808 hsa-miR-3612 0 1 0
chr17:4960420|4960808 hsa-miR-3943 1 0 0
chr17:4960420|4960808 hsa-miR-4518 0 1 0
chr17:4960420|4960808 hsa-miR-3972 1 0 0
chr17:4960420|4960808 hsa-miR-5193 1 1 0
chr17:4960420|4960808 hsa-miR-5685 0 1 0
chr17:4960420|4960808 hsa-miR-8081 0 1 0
chr17:4960420|4960808 hsa-miR-8085 0 1 0
chr17:4960420|4960808 hsa-miR-12116 1 0 0
chr17:4960420|4960808 hsa-miR-9-5p 0 1 0
chr17:4960420|4960808 hsa-miR-211-3p 0 1 0
chr17:4960420|4960808 hsa-miR-6749-3p 1 1 0
chr17:4960420|4960808 hsa-miR-6734-5p 0 1 0
chr17:4960420|4960808 hsa-miR-512-5p 1 0 0
chr17:4960420|4960808 hsa-miR-4726-3p 1 0 0
chr17:4960420|4960808 hsa-miR-6836-3p 1 1 0
chr17:4960420|4960808 hsa-miR-218-2-3p 0 1 0
chr17:4960420|4960808 hsa-miR-1972 1 0 0
chr17:4960420|4960808 hsa-miR-6822-3p 1 0 0
chr17:4960420|4960808 hsa-miR-766-3p 1 0 0
chr17:4960420|4960808 hsa-miR-6892-3p 1 1 0
chr17:4960420|4960808 hsa-miR-224-5p 0 1 0
chr17:4960420|4960808 hsa-miR-6875-3p 1 1 0
chr17:4960420|4960808 hsa-miR-6832-3p 0 1 0
chr17:4960420|4960808 hsa-miR-6845-3p 1 0 0
chr17:4960420|4960808 hsa-miR-942-5p 0 1 0
chr17:4960420|4960808 hsa-miR-3691-3p 1 0 0
chr17:4960420|4960808 hsa-miR-615-3p 1 0 0
chr17:4960420|4960808 hsa-miR-4436b-5p 1 0 0
chr17:4960420|4960808 hsa-miR-6884-3p 1 0 0
chr17:4960420|4960808 hsa-miR-939-3p 1 1 0
chr17:4960420|4960808 hsa-miR-4763-5p 1 0 0
chr17:4960420|4960808 hsa-miR-6763-3p 1 1 0
chr17:4960420|4960808 hsa-miR-4707-3p 1 0 0
chr17:4960420|4960808 hsa-miR-6894-3p 1 0 0
chr17:4960420|4960808 hsa-miR-6803-3p 1 0 0
chr17:4960420|4960808 hsa-miR-5001-3p 0 1 0
chr17:4960420|4960808 hsa-miR-7113-3p 1 0 0
chr17:4960420|4960808 hsa-miR-3667-3p 1 1 0
chr17:4960420|4960808 hsa-miR-7111-3p 1 0 0
chr17:4960420|4960808 hsa-miR-6830-3p 0 1 0
chr17:4960420|4960808 hsa-miR-1306-5p 1 0 0
chr17:4960420|4960808 hsa-miR-3925-3p 0 1 0
chr17:4960420|4960808 hsa-miR-6769a-3p 1 0 0
chr17:4960420|4960808 hsa-miR-4707-5p 1 0 0
chr17:4960420|4960808 hsa-miR-2115-5p 0 1 0
chr17:4960420|4960808 hsa-miR-1236-3p 1 0 0
chr17:4960420|4960808 hsa-miR-6730-3p 0 1 0
chr17:4960420|4960808 hsa-miR-6778-3p 1 1 0
chr17:4960420|4960808 hsa-miR-6871-3p 0 1 0
chr17:4960420|4960808 hsa-miR-3160-5p 1 0 0
chr17:4960420|4960808 hsa-miR-6865-3p 0 1 0
chr17:4960420|4960808 hsa-miR-7113-5p 0 1 0
chr17:4960420|4960808 hsa-miR-6886-3p 1 1 0
chr17:4960420|4960808 hsa-miR-5591-3p 1 0 0
chr17:4960420|4960808 hsa-miR-5088-3p 1 1 0
chr17:4960420|4960808 hsa-miR-6853-3p 1 1 0
chr17:4960420|4960808 hsa-miR-328-3p 0 1 0
chr17:4960420|4960808 hsa-miR-6880-3p 1 0 0
chr17:4960420|4960808 hsa-miR-6883-3p 1 0 0
chr17:4960420|4960808 hsa-miR-6851-3p 1 1 0
chr17:4960420|4960808 hsa-miR-4717-5p 1 0 0
chr17:4960420|4960808 hsa-miR-6734-3p 1 1 0
chr17:4960420|4960808 hsa-miR-1249-3p 1 0 0
chr17:4960420|4960808 hsa-miR-888-3p 1 1 0
chr17:4960420|4960808 hsa-miR-6800-3p 1 0 0
chr17:4960420|4960808 hsa-miR-6885-3p 1 0 0
chr17:4960420|4960808 hsa-miR-6788-5p 0 1 0
chr17:4960420|4960808 hsa-miR-320a-5p 1 0 0
chr17:4960420|4960808 hsa-miR-4685-3p 1 0 0
chr17:4960420|4960808 hsa-miR-4728-5p 1 1 0
chr17:4960420|4960808 hsa-miR-30c-1-3p 0 1 0
chr17:4960420|4960808 hsa-miR-6758-5p 0 1 0
chr17:4960420|4960808 hsa-miR-1199-5p 0 1 0
chr17:4960420|4960808 hsa-miR-6791-3p 1 0 0
chr17:4960420|4960808 hsa-miR-6877-3p 1 0 0
chr17:4960420|4960808 hsa-miR-4716-3p 0 1 0
chr17:4960420|4960808 hsa-miR-10398-5p 1 0 0
chr17:4960420|4960808 hsa-miR-6756-3p 1 0 0
chr17:4960420|4960808 hsa-miR-6862-3p 1 0 0
chr17:4960420|4960808 hsa-miR-6801-3p 1 0 0
chr17:4960420|4960808 hsa-miR-6829-3p 1 1 0
chr17:4960420|4960808 hsa-miR-3059-5p 1 0 0
chr17:4960420|4960808 hsa-miR-3130-5p 1 0 0
chr17:4960420|4960808 hsa-miR-4723-3p 0 1 0
chr17:4960420|4960808 hsa-miR-6511b-3p 1 0 0
chr17:4960420|4960808 hsa-miR-6751-3p 1 1 0
chr17:4960420|4960808 hsa-miR-6744-3p 1 0 0
chr17:4960420|4960808 hsa-miR-4691-5p 0 1 0
chr17:4960420|4960808 hsa-miR-6764-5p 0 1 0
chr17:4960420|4960808 hsa-miR-455-3p 0 1 0
chr17:4960420|4960808 hsa-miR-664b-3p 1 0 0
chr17:4960420|4960808 hsa-miR-6507-3p 0 1 0
chr17:4960420|4960808 hsa-miR-302b-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


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circRNA Open Reading Frame (ORF)
CircID chr17:4960420|4960808
ORF Type ORF1
Protein Length 27
Nucleotide Length 84
Protein Sequence MREVTHGSQWLGGWGGCWGGVEGPRLS
Nucleotide Sequence TTGAGAGAGGTGACGCATGGAAGCCAGTGGCTTGGAGGCTGGGGAGGGTGCTGGGGAGGCGTAGAAGGGCCCAGGCTCAGCTAG

CircID chr17:4960420|4960808
ORF Type ORF2
Protein Length 46
Nucleotide Length 141
Protein Sequence MGGAIVSYLLPFPSPKMEKEVSDFIQDSGQIKKKFQPMNKIERSIL
Nucleotide Sequence TTGGGTGGAGCCATTGTCTCATATCTGCTTCCTTTCCCCTCTCCCAAGATGGAGAAGGAGGTGTCAGATTTCATTCAAGACAGTGGGCAGATCAAGAAAAAGTTTCAGCCAATGAACAAGATCGAGAGGAGCATACTGTGA

CircID chr17:4960420|4960808
ORF Type ORF3
Protein Length 33
Nucleotide Length 102
Protein Sequence MSHICFLSPLPRWRRRCQISFKTVGRSRKSFSQ
Nucleotide Sequence TTGTCTCATATCTGCTTCCTTTCCCCTCTCCCAAGATGGAGAAGGAGGTGTCAGATTTCATTCAAGACAGTGGGCAGATCAAGAAAAAGTTTCAGCCAATGA

CircID chr17:4960420|4960808
ORF Type ORF4
Protein Length 78
Nucleotide Length 234
Protein Sequence MGRVLGRRRRAQAQLGRGVLGWSHCLISASFPLSQDGEGGVRFHSRQWADQEKVSANEQDREEHTVSVPGLGEEGNGW
Nucleotide Sequence CTGGGGAGGGTGCTGGGGAGGCGTAGAAGGGCCCAGGCTCAGCTAGGGAGAGGGGTACTTGGGTGGAGCCATTGTCTCATATCTGCTTCCTTTCCCCTCTCCCAAGATGGAGAAGGAGGTGTCAGATTTCATTCAAGACAGTGGGCAGATCAAGAAAAAGTTTCAGCCAATGAACAAGATCGAGAGGAGCATACTGTGAGTGTCCCTGGGCTGGGGGAGGAAGGAAATGGGTGG

CircID chr17:4960420|4960808
ORF Type ORF5
Protein Length 29
Nucleotide Length 90
Protein Sequence MKSDTSFSILGEGKGSRYETMAPPKYPSP
Nucleotide Sequence ATGAAATCTGACACCTCCTTCTCCATCTTGGGAGAGGGGAAAGGAAGCAGATATGAGACAATGGCTCCACCCAAGTACCCCTCTCCCTAG

CircID chr17:4960420|4960808
ORF Type ORF6
Protein Length 65
Nucleotide Length 195
Protein Sequence MSLGPSTPPQHPPQPPSHWLPCVTSLKTFSAKLSPQPSNFNLLEVLPESAFDHSSCSHPFTKLHF
Nucleotide Sequence CTGAGCCTGGGCCCTTCTACGCCTCCCCAGCACCCTCCCCAGCCTCCAAGCCACTGGCTTCCATGCGTCACCTCTCTCAAGACATTTTCAGCAAAACTGAGTCCTCAACCTTCCAATTTTAACTTATTGGAAGTCCTTCCTGAGTCTGCCTTTGATCACTCCAGTTGTTCTCACCCTTTTACGAAACTCCACTTT

CircID chr17:4960420|4960808
ORF Type ORF7
Protein Length 28
Nucleotide Length 87
Protein Sequence MTPPSPSWERGKEADMRQWLHPSTPLPS
Nucleotide Sequence CTGACACCTCCTTCTCCATCTTGGGAGAGGGGAAAGGAAGCAGATATGAGACAATGGCTCCACCCAAGTACCCCTCTCCCTAGCTGA

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites