CircRNA Information

General Information
circRNA Basic Information
CircID chr17:50076332|50076648
Strand -
CircType exon
Host Gene ENSG00000005884.16;
Algorism CIRI2;
Sequence CTCCGTGACAAACTCCGCCCCATCATCATCTCCATGAACTACTCTTTACCTTTGCGGATGCCCGATCGCCCCCGGCTGGGGCTGCGGTCCCTGGACGCCTACCCGATCCTCAACCAGGCACAGGCTCTGGAGAACCACACTGAGGTGAGTGGGGCTGGCGCCTGGACTGGAAGACCAGGGGCCAGAAGGGCGGTGGGGCGAGAGGGCACTGGGGGGGGTGGTGCGGCCTTCACACCTCCGGCCACCCCCCAGGTCCAGTTCCAGAAGGAGTGCGGGCCTGACAACAAGTGTGAGAGCAACTTGCAGATGCGGGCAGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:50076332|50076648 hsa-miR-143-5p 0 0 1
chr17:50076332|50076648 hsa-miR-143-3p 0 0 1
chr17:50076332|50076648 hsa-miR-492 0 1 1
chr17:50076332|50076648 hsa-miR-563 0 0 1
chr17:50076332|50076648 hsa-miR-583 0 0 1
chr17:50076332|50076648 hsa-miR-608 0 0 1
chr17:50076332|50076648 hsa-miR-620 0 0 1
chr17:50076332|50076648 hsa-miR-631 0 0 1
chr17:50076332|50076648 hsa-miR-637 1 1 1
chr17:50076332|50076648 hsa-miR-661 0 0 1
chr17:50076332|50076648 hsa-miR-766-5p 0 0 1
chr17:50076332|50076648 hsa-miR-766-3p 0 0 1
chr17:50076332|50076648 hsa-miR-1237-5p 0 0 1
chr17:50076332|50076648 hsa-miR-1237-3p 0 0 1
chr17:50076332|50076648 hsa-miR-1206 0 0 1
chr17:50076332|50076648 hsa-miR-1299 0 1 1
chr17:50076332|50076648 hsa-miR-1248 0 0 1
chr17:50076332|50076648 hsa-miR-1249-5p 0 0 1
chr17:50076332|50076648 hsa-miR-1249-3p 0 0 1
chr17:50076332|50076648 hsa-miR-548m 0 0 1
chr17:50076332|50076648 hsa-miR-1270 0 0 1
chr17:50076332|50076648 hsa-miR-1272 0 1 1
chr17:50076332|50076648 hsa-miR-1276 0 0 1
chr17:50076332|50076648 hsa-miR-1825 1 1 1
chr17:50076332|50076648 hsa-miR-145-5p 0 0 1
chr17:50076332|50076648 hsa-miR-1224-5p 1 0 1
chr17:50076332|50076648 hsa-miR-525-5p 0 0 1
chr17:50076332|50076648 hsa-miR-361-3p 0 0 1
chr17:50076332|50076648 hsa-miR-490-5p 0 0 1
chr17:50076332|50076648 hsa-miR-331-3p 0 1 1
chr17:50076332|50076648 hsa-miR-875-3p 0 0 1
chr17:50076332|50076648 hsa-miR-1244 1 1 1
chr17:50076332|50076648 hsa-miR-520a-5p 0 0 1
chr17:50076332|50076648 hsa-miR-483-3p 0 0 1
chr17:50076332|50076648 hsa-miR-455-3p 0 0 1
chr17:50076332|50076648 hsa-miR-342-3p 0 0 1
chr17:50076332|50076648 hsa-miR-515-5p 0 0 1
chr17:50076332|50076648 hsa-miR-220b 0 0 1
chr17:50076332|50076648 hsa-miR-1280 0 0 1
chr17:50076332|50076648 hsa-miR-550 0 0 1
chr17:50076332|50076648 hsa-miR-516b 0 0 1
chr17:50076332|50076648 hsa-miR-1254 0 0 1
chr17:50076332|50076648 hsa-miR-1185 0 0 1
chr17:50076332|50076648 hsa-miR-638 1 1 0
chr17:50076332|50076648 hsa-miR-647 1 0 0
chr17:50076332|50076648 hsa-miR-663a 1 0 0
chr17:50076332|50076648 hsa-miR-1470 1 0 0
chr17:50076332|50076648 hsa-miR-718 1 0 0
chr17:50076332|50076648 hsa-miR-2861 1 0 0
chr17:50076332|50076648 hsa-miR-4302 0 1 0
chr17:50076332|50076648 hsa-miR-4323 1 1 0
chr17:50076332|50076648 hsa-miR-4253 1 0 0
chr17:50076332|50076648 hsa-miR-4271 1 0 0
chr17:50076332|50076648 hsa-miR-3652 1 1 0
chr17:50076332|50076648 hsa-miR-3713 1 0 0
chr17:50076332|50076648 hsa-miR-3714 1 0 0
chr17:50076332|50076648 hsa-miR-3909 1 0 0
chr17:50076332|50076648 hsa-miR-3945 1 0 0
chr17:50076332|50076648 hsa-miR-4488 1 0 0
chr17:50076332|50076648 hsa-miR-4493 0 1 0
chr17:50076332|50076648 hsa-miR-4535 0 1 0
chr17:50076332|50076648 hsa-miR-3972 1 1 0
chr17:50076332|50076648 hsa-miR-4651 0 1 0
chr17:50076332|50076648 hsa-miR-4689 1 0 0
chr17:50076332|50076648 hsa-miR-5194 1 0 0
chr17:50076332|50076648 hsa-miR-5787 1 0 0
chr17:50076332|50076648 hsa-miR-6088 1 1 0
chr17:50076332|50076648 hsa-miR-9899 1 0 0
chr17:50076332|50076648 hsa-miR-211-3p 0 1 0
chr17:50076332|50076648 hsa-miR-4747-3p 0 1 0
chr17:50076332|50076648 hsa-miR-92a-2-5p 1 0 0
chr17:50076332|50076648 hsa-miR-128-1-5p 0 1 0
chr17:50076332|50076648 hsa-miR-6765-5p 1 0 0
chr17:50076332|50076648 hsa-miR-149-5p 0 1 0
chr17:50076332|50076648 hsa-miR-6861-5p 1 0 0
chr17:50076332|50076648 hsa-miR-6857-5p 1 1 0
chr17:50076332|50076648 hsa-miR-6892-3p 0 1 0
chr17:50076332|50076648 hsa-miR-6799-5p 1 0 0
chr17:50076332|50076648 hsa-miR-6089 1 0 0
chr17:50076332|50076648 hsa-miR-6880-5p 1 0 0
chr17:50076332|50076648 hsa-miR-874-5p 0 1 0
chr17:50076332|50076648 hsa-miR-3189-5p 1 0 0
chr17:50076332|50076648 hsa-miR-3682-3p 1 0 0
chr17:50076332|50076648 hsa-miR-3180-3p 1 1 0
chr17:50076332|50076648 hsa-miR-6868-3p 0 1 0
chr17:50076332|50076648 hsa-miR-6732-5p 1 0 0
chr17:50076332|50076648 hsa-miR-6805-5p 1 0 0
chr17:50076332|50076648 hsa-miR-6798-5p 1 0 0
chr17:50076332|50076648 hsa-miR-2467-3p 1 1 0
chr17:50076332|50076648 hsa-miR-6782-5p 1 0 0
chr17:50076332|50076648 hsa-miR-6858-3p 1 1 0
chr17:50076332|50076648 hsa-miR-6786-5p 1 0 0
chr17:50076332|50076648 hsa-miR-3186-5p 0 1 0
chr17:50076332|50076648 hsa-miR-1229-5p 1 0 0
chr17:50076332|50076648 hsa-miR-1908-3p 1 0 0
chr17:50076332|50076648 hsa-miR-6749-5p 1 0 0
chr17:50076332|50076648 hsa-miR-7111-3p 0 1 0
chr17:50076332|50076648 hsa-miR-4743-5p 1 1 0
chr17:50076332|50076648 hsa-miR-4787-5p 1 1 0
chr17:50076332|50076648 hsa-miR-202-3p 1 0 0
chr17:50076332|50076648 hsa-miR-6789-5p 1 0 0
chr17:50076332|50076648 hsa-miR-550b-2-5p 0 1 0
chr17:50076332|50076648 hsa-miR-6500-3p 0 1 0
chr17:50076332|50076648 hsa-miR-6781-5p 1 0 0
chr17:50076332|50076648 hsa-miR-6869-5p 1 0 0
chr17:50076332|50076648 hsa-miR-4707-5p 1 0 0
chr17:50076332|50076648 hsa-miR-6811-3p 0 1 0
chr17:50076332|50076648 hsa-miR-4758-3p 0 1 0
chr17:50076332|50076648 hsa-miR-597-3p 0 1 0
chr17:50076332|50076648 hsa-miR-4750-5p 1 0 0
chr17:50076332|50076648 hsa-miR-6895-3p 1 0 0
chr17:50076332|50076648 hsa-miR-1296-5p 1 0 0
chr17:50076332|50076648 hsa-miR-6865-3p 1 0 0
chr17:50076332|50076648 hsa-miR-1914-5p 0 1 0
chr17:50076332|50076648 hsa-miR-6886-3p 0 1 0
chr17:50076332|50076648 hsa-miR-5088-3p 0 1 0
chr17:50076332|50076648 hsa-miR-6755-3p 0 1 0
chr17:50076332|50076648 hsa-miR-6880-3p 1 0 0
chr17:50076332|50076648 hsa-miR-4433a-5p 1 0 0
chr17:50076332|50076648 hsa-miR-6729-3p 1 1 0
chr17:50076332|50076648 hsa-miR-1273h-5p 1 0 0
chr17:50076332|50076648 hsa-miR-6812-5p 1 0 0
chr17:50076332|50076648 hsa-miR-6816-5p 1 1 0
chr17:50076332|50076648 hsa-miR-1343-5p 1 0 0
chr17:50076332|50076648 hsa-miR-3180 0 1 0
chr17:50076332|50076648 hsa-miR-6737-5p 1 0 0
chr17:50076332|50076648 hsa-miR-6752-5p 1 1 0
chr17:50076332|50076648 hsa-miR-6756-5p 1 0 0
chr17:50076332|50076648 hsa-miR-6819-5p 1 0 0
chr17:50076332|50076648 hsa-miR-6842-5p 1 1 0
chr17:50076332|50076648 hsa-miR-6851-5p 1 1 0
chr17:50076332|50076648 hsa-miR-7110-5p 1 1 0
chr17:50076332|50076648 hsa-miR-320a-5p 0 1 0
chr17:50076332|50076648 hsa-miR-6862-5p 1 0 0
chr17:50076332|50076648 hsa-miR-4649-5p 1 0 0
chr17:50076332|50076648 hsa-miR-6729-5p 1 0 0
chr17:50076332|50076648 hsa-miR-6846-5p 1 0 0
chr17:50076332|50076648 hsa-miR-6848-5p 1 0 0
chr17:50076332|50076648 hsa-miR-6858-5p 1 0 0
chr17:50076332|50076648 hsa-miR-4697-5p 0 1 0
chr17:50076332|50076648 hsa-miR-6831-5p 1 0 0
chr17:50076332|50076648 hsa-miR-324-3p 1 0 0
chr17:50076332|50076648 hsa-miR-3679-5p 1 0 0
chr17:50076332|50076648 hsa-miR-3689d 0 1 0
chr17:50076332|50076648 hsa-miR-6784-3p 1 0 0
chr17:50076332|50076648 hsa-miR-10392-3p 1 0 0
chr17:50076332|50076648 hsa-miR-3059-5p 1 0 0
chr17:50076332|50076648 hsa-miR-6511b-3p 1 0 0
chr17:50076332|50076648 hsa-miR-137-5p 1 0 0
chr17:50076332|50076648 hsa-miR-6797-3p 1 0 0
chr17:50076332|50076648 hsa-miR-7156-5p 0 1 0
chr17:50076332|50076648 hsa-miR-6820-3p 1 0 0
chr17:50076332|50076648 hsa-miR-548ag 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:50076332|50076648
ORF Type ORF1
Protein Length 94
Nucleotide Length 282
Protein Sequence MNYSLPLRMPDRPRLGLRSLDAYPILNQAQALENHTEVSGAGAWTGRPGARRAVGREGTGGGGAAFTPPATPQVQFQKECGPDNKCESNLQMRA
Nucleotide Sequence ATGAACTACTCTTTACCTTTGCGGATGCCCGATCGCCCCCGGCTGGGGCTGCGGTCCCTGGACGCCTACCCGATCCTCAACCAGGCACAGGCTCTGGAGAACCACACTGAGGTGAGTGGGGCTGGCGCCTGGACTGGAAGACCAGGGGCCAGAAGGGCGGTGGGGCGAGAGGGCACTGGGGGGGGTGGTGCGGCCTTCACACCTCCGGCCACCCCCCAGGTCCAGTTCCAGAAGGAGTGCGGGCCTGACAACAAGTGTGAGAGCAACTTGCAGATGCGGGCA
CircID chr17:50076332|50076648
ORF Type ORF2
Protein Length 54
Nucleotide Length 162
Protein Sequence MAPGLEDQGPEGRWGERALGGVVRPSHLRPPPRSSSRRSAGLTTSVRATCRCGQ
Nucleotide Sequence CTGGCGCCTGGACTGGAAGACCAGGGGCCAGAAGGGCGGTGGGGCGAGAGGGCACTGGGGGGGGTGGTGCGGCCTTCACACCTCCGGCCACCCCCCAGGTCCAGTTCCAGAAGGAGTGCGGGCCTGACAACAAGTGTGAGAGCAACTTGCAGATGCGGGCAG
CircID chr17:50076332|50076648
ORF Type ORF3
Protein Length 39
Nucleotide Length 120
Protein Sequence MDWKTRGQKGGGARGHWGGWCGLHTSGHPPGPVPEGVRA
Nucleotide Sequence CTGGACTGGAAGACCAGGGGCCAGAAGGGCGGTGGGGCGAGAGGGCACTGGGGGGGGTGGTGCGGCCTTCACACCTCCGGCCACCCCCCAGGTCCAGTTCCAGAAGGAGTGCGGGCCTGA
CircID chr17:50076332|50076648
ORF Type ORF4
Protein Length 66
Nucleotide Length 201
Protein Sequence MLSHLLSGPHSFWNWTWGVAGGVKAAPPPPVPSRPTALLAPGLPVQAPAPLTSVWFSRACAWLRIG
Nucleotide Sequence TTGCTCTCACACTTGTTGTCAGGCCCGCACTCCTTCTGGAACTGGACCTGGGGGGTGGCCGGAGGTGTGAAGGCCGCACCACCCCCCCCAGTGCCCTCTCGCCCCACCGCCCTTCTGGCCCCTGGTCTTCCAGTCCAGGCGCCAGCCCCACTCACCTCAGTGTGGTTCTCCAGAGCCTGTGCCTGGTTGAGGATCGGGTAG
CircID chr17:50076332|50076648
ORF Type ORF5
Protein Length 28
Nucleotide Length 87
Protein Sequence LPASASCSHTCCQARTPSGTGPGGWPEV
Nucleotide Sequence CTGCCCGCATCTGCAAGTTGCTCTCACACTTGTTGTCAGGCCCGCACTCCTTCTGGAACTGGACCTGGGGGGTGGCCGGAGGTGTGA
CircID chr17:50076332|50076648
ORF Type ORF6
Protein Length 86
Nucleotide Length 261
Protein Sequence MQVALTLVVRPALLLELDLGGGRRCEGRTTPPSALSPHRPSGPWSSSPGASPTHLSVVLQSLCLVEDRVGVQGPQPQPGAIGHPQR
Nucleotide Sequence CTGCAAGTTGCTCTCACACTTGTTGTCAGGCCCGCACTCCTTCTGGAACTGGACCTGGGGGGTGGCCGGAGGTGTGAAGGCCGCACCACCCCCCCCAGTGCCCTCTCGCCCCACCGCCCTTCTGGCCCCTGGTCTTCCAGTCCAGGCGCCAGCCCCACTCACCTCAGTGTGGTTCTCCAGAGCCTGTGCCTGGTTGAGGATCGGGTAGGCGTCCAGGGACCGCAGCCCCAGCCGGGGGCGATCGGGCATCCGCAAAGGTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab