CircRNA Information

General Information
circRNA Basic Information
CircID chr17:50184270|50184401
Strand -
CircType exon
Host Gene ENSG00000108821.12;
Algorism CIRI2;
Sequence GCAGGACAGACTAGGAGGGAGCCGGGAGGATGGGCTGCAGCTGTGGAGGAGGGTTTCAGAGGAGAGAGGTCGGAGAGCAGAGGCCTGAGAAGCCAGAGGCAGGTGGAGAGAGGGTGGAAAGTGAGCAGCGGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:50184270|50184401 hsa-miR-149-5p 0 0 1
chr17:50184270|50184401 hsa-miR-149-3p 0 0 1
chr17:50184270|50184401 hsa-miR-1178-5p 0 0 1
chr17:50184270|50184401 hsa-miR-1178-3p 0 0 1
chr17:50184270|50184401 hsa-miR-1266-5p 0 0 1
chr17:50184270|50184401 hsa-miR-1266-3p 0 0 1
chr17:50184270|50184401 hsa-miR-1184 0 1 1
chr17:50184270|50184401 hsa-miR-767-3p 1 1 1
chr17:50184270|50184401 hsa-miR-326 1 0 0
chr17:50184270|50184401 hsa-miR-596 1 0 0
chr17:50184270|50184401 hsa-miR-892b 1 0 0
chr17:50184270|50184401 hsa-miR-718 1 0 0
chr17:50184270|50184401 hsa-miR-3183 1 1 0
chr17:50184270|50184401 hsa-miR-4279 1 1 0
chr17:50184270|50184401 hsa-miR-3615 1 0 0
chr17:50184270|50184401 hsa-miR-3909 1 0 0
chr17:50184270|50184401 hsa-miR-4469 1 0 0
chr17:50184270|50184401 hsa-miR-5193 1 1 0
chr17:50184270|50184401 hsa-miR-6071 1 0 0
chr17:50184270|50184401 hsa-miR-7703 1 0 0
chr17:50184270|50184401 hsa-miR-146a-3p 0 1 0
chr17:50184270|50184401 hsa-miR-6747-3p 1 0 0
chr17:50184270|50184401 hsa-miR-212-5p 1 0 0
chr17:50184270|50184401 hsa-miR-766-3p 1 0 0
chr17:50184270|50184401 hsa-miR-6892-3p 1 1 0
chr17:50184270|50184401 hsa-miR-6881-3p 1 0 0
chr17:50184270|50184401 hsa-miR-6762-3p 1 0 0
chr17:50184270|50184401 hsa-miR-6873-3p 1 1 0
chr17:50184270|50184401 hsa-miR-7110-3p 1 1 0
chr17:50184270|50184401 hsa-miR-6817-3p 1 0 0
chr17:50184270|50184401 hsa-miR-1915-5p 1 0 0
chr17:50184270|50184401 hsa-miR-6845-3p 1 1 0
chr17:50184270|50184401 hsa-miR-877-3p 1 0 0
chr17:50184270|50184401 hsa-miR-6728-3p 1 1 0
chr17:50184270|50184401 hsa-miR-6735-3p 1 0 0
chr17:50184270|50184401 hsa-miR-6882-3p 1 0 0
chr17:50184270|50184401 hsa-miR-6716-3p 1 0 0
chr17:50184270|50184401 hsa-miR-6740-3p 1 0 0
chr17:50184270|50184401 hsa-miR-4763-5p 1 0 0
chr17:50184270|50184401 hsa-miR-6763-3p 1 0 0
chr17:50184270|50184401 hsa-miR-5001-3p 1 0 0
chr17:50184270|50184401 hsa-miR-7113-3p 1 0 0
chr17:50184270|50184401 hsa-miR-3667-3p 1 0 0
chr17:50184270|50184401 hsa-miR-3191-5p 1 0 0
chr17:50184270|50184401 hsa-miR-6821-3p 1 1 0
chr17:50184270|50184401 hsa-miR-6861-3p 1 0 0
chr17:50184270|50184401 hsa-miR-6878-3p 1 0 0
chr17:50184270|50184401 hsa-miR-7111-3p 1 1 0
chr17:50184270|50184401 hsa-miR-6780a-3p 0 1 0
chr17:50184270|50184401 hsa-miR-5196-3p 1 1 0
chr17:50184270|50184401 hsa-miR-4667-3p 0 1 0
chr17:50184270|50184401 hsa-miR-6825-3p 1 0 0
chr17:50184270|50184401 hsa-miR-4776-3p 1 0 0
chr17:50184270|50184401 hsa-miR-1236-3p 1 0 0
chr17:50184270|50184401 hsa-miR-6743-3p 1 0 0
chr17:50184270|50184401 hsa-miR-4695-3p 1 0 0
chr17:50184270|50184401 hsa-miR-7106-3p 1 1 0
chr17:50184270|50184401 hsa-miR-1180-3p 1 0 0
chr17:50184270|50184401 hsa-miR-4687-5p 1 1 0
chr17:50184270|50184401 hsa-miR-6828-3p 1 1 0
chr17:50184270|50184401 hsa-miR-6867-3p 1 0 0
chr17:50184270|50184401 hsa-miR-1224-3p 1 0 0
chr17:50184270|50184401 hsa-miR-2276-5p 1 0 0
chr17:50184270|50184401 hsa-miR-6741-3p 1 0 0
chr17:50184270|50184401 hsa-miR-6837-3p 1 0 0
chr17:50184270|50184401 hsa-miR-4632-3p 1 0 0
chr17:50184270|50184401 hsa-miR-7848-3p 1 0 0
chr17:50184270|50184401 hsa-miR-6865-3p 1 1 0
chr17:50184270|50184401 hsa-miR-6826-3p 1 0 0
chr17:50184270|50184401 hsa-miR-5088-3p 1 0 0
chr17:50184270|50184401 hsa-miR-4649-3p 1 0 0
chr17:50184270|50184401 hsa-miR-6777-3p 1 0 0
chr17:50184270|50184401 hsa-miR-937-3p 1 0 0
chr17:50184270|50184401 hsa-miR-6760-3p 1 0 0
chr17:50184270|50184401 hsa-miR-6880-3p 1 0 0
chr17:50184270|50184401 hsa-miR-130b-5p 1 0 0
chr17:50184270|50184401 hsa-miR-1255b-2-3p 1 0 0
chr17:50184270|50184401 hsa-miR-3620-3p 1 0 0
chr17:50184270|50184401 hsa-miR-1229-3p 1 0 0
chr17:50184270|50184401 hsa-miR-6734-3p 1 0 0
chr17:50184270|50184401 hsa-miR-6759-3p 1 0 0
chr17:50184270|50184401 hsa-miR-6847-3p 1 0 0
chr17:50184270|50184401 hsa-miR-642a-5p 1 0 0
chr17:50184270|50184401 hsa-miR-550b-3p 1 0 0
chr17:50184270|50184401 hsa-miR-4650-5p 1 1 0
chr17:50184270|50184401 hsa-miR-3127-3p 1 0 0
chr17:50184270|50184401 hsa-miR-320a-5p 1 0 0
chr17:50184270|50184401 hsa-miR-4685-3p 1 0 0
chr17:50184270|50184401 hsa-miR-6754-3p 1 1 0
chr17:50184270|50184401 hsa-miR-5008-3p 1 0 0
chr17:50184270|50184401 hsa-miR-6877-3p 1 1 0
chr17:50184270|50184401 hsa-miR-10398-5p 1 1 0
chr17:50184270|50184401 hsa-miR-4757-5p 1 0 0
chr17:50184270|50184401 hsa-miR-6792-3p 1 1 0
chr17:50184270|50184401 hsa-miR-6805-3p 1 0 0
chr17:50184270|50184401 hsa-miR-6810-3p 1 0 0
chr17:50184270|50184401 hsa-miR-11181-5p 1 0 0
chr17:50184270|50184401 hsa-miR-3059-5p 1 0 0
chr17:50184270|50184401 hsa-miR-4723-3p 1 1 0
chr17:50184270|50184401 hsa-miR-483-3p 1 0 0
chr17:50184270|50184401 hsa-miR-6511b-3p 1 0 0
chr17:50184270|50184401 hsa-miR-6769b-3p 1 1 0
chr17:50184270|50184401 hsa-miR-6744-3p 1 1 0
chr17:50184270|50184401 hsa-miR-6781-3p 1 0 0
chr17:50184270|50184401 hsa-miR-5006-3p 1 0 0
chr17:50184270|50184401 hsa-miR-6827-3p 1 0 0
chr17:50184270|50184401 hsa-miR-6833-3p 1 1 0
chr17:50184270|50184401 hsa-miR-6764-3p 1 0 0
chr17:50184270|50184401 hsa-miR-6505-3p 1 0 0
chr17:50184270|50184401 hsa-miR-1250-3p 1 0 0
chr17:50184270|50184401 hsa-miR-135b-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr17:50184270|50184401
ORF Type ORF1
Protein Length 34
Nucleotide Length 102
Protein Sequence MGCSCGGGFQRREVGEQRPEKPEAGGERVESEQR
Nucleotide Sequence ATGGGCTGCAGCTGTGGAGGAGGGTTTCAGAGGAGAGAGGTCGGAGAGCAGAGGCCTGAGAAGCCAGAGGCAGGTGGAGAGAGGGTGGAAAGTGAGCAGCGG
CircID chr17:50184270|50184401
ORF Type ORF2
Protein Length 34
Nucleotide Length 102
Protein Sequence MPLASQASALRPLSSETLLHSCSPSSRLPPSLSC
Nucleotide Sequence CTGCCTCTGGCTTCTCAGGCCTCTGCTCTCCGACCTCTCTCCTCTGAAACCCTCCTCCACAGCTGCAGCCCATCCTCCCGGCTCCCTCCTAGTCTGTCCTGC
CircID chr17:50184270|50184401
ORF Type ORF3
Protein Length 42
Nucleotide Length 126
Protein Sequence MLTFHPLSTCLWLLRPLLSDLSPLKPSSTAAAHPPGSLLVCP
Nucleotide Sequence CTGCTCACTTTCCACCCTCTCTCCACCTGCCTCTGGCTTCTCAGGCCTCTGCTCTCCGACCTCTCTCCTCTGAAACCCTCCTCCACAGCTGCAGCCCATCCTCCCGGCTCCCTCCTAGTCTGTCCT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab