CircRNA Information

General Information
circRNA Basic Information
CircID chr17:50184851|50184962
Strand +
CircType exon
Host Gene ENSG00000108821.12;
Algorism CIRI2;
Sequence CTGGGGTTCTCAGACTGCCAAAGAAGCCTTGCCATCTGGCGCTCCCATGGCTCTTGCAACATCTCCCCTTCGTTTTTGAGGGGGTCATGCCGGGGGAGCCACCAGCCCCTCA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:50184851|50184962 hsa-miR-31-5p 0 0 1
chr17:50184851|50184962 hsa-miR-31-3p 0 0 1
chr17:50184851|50184962 hsa-miR-96-5p 0 0 1
chr17:50184851|50184962 hsa-miR-96-3p 0 0 1
chr17:50184851|50184962 hsa-miR-34a-5p 0 0 1
chr17:50184851|50184962 hsa-miR-34a-3p 0 0 1
chr17:50184851|50184962 hsa-miR-182-5p 0 0 1
chr17:50184851|50184962 hsa-miR-182-3p 0 0 1
chr17:50184851|50184962 hsa-miR-146a-5p 0 0 1
chr17:50184851|50184962 hsa-miR-146a-3p 0 0 1
chr17:50184851|50184962 hsa-miR-335-5p 0 0 1
chr17:50184851|50184962 hsa-miR-335-3p 0 0 1
chr17:50184851|50184962 hsa-miR-449a 0 0 1
chr17:50184851|50184962 hsa-miR-589-5p 0 0 1
chr17:50184851|50184962 hsa-miR-589-3p 0 0 1
chr17:50184851|50184962 hsa-miR-622 0 0 1
chr17:50184851|50184962 hsa-miR-449b-5p 0 0 1
chr17:50184851|50184962 hsa-miR-449b-3p 0 0 1
chr17:50184851|50184962 hsa-miR-1271-5p 0 0 1
chr17:50184851|50184962 hsa-miR-1271-3p 0 0 1
chr17:50184851|50184962 hsa-miR-920 0 0 1
chr17:50184851|50184962 hsa-miR-423-5p 0 0 1
chr17:50184851|50184962 hsa-miR-339-3p 0 1 1
chr17:50184851|50184962 hsa-miR-34c-5p 0 0 1
chr17:50184851|50184962 hsa-miR-146b-5p 0 0 1
chr17:50184851|50184962 hsa-miR-9 0 0 1
chr17:50184851|50184962 hsa-miR-138 0 0 1
chr17:50184851|50184962 hsa-miR-638 1 0 0
chr17:50184851|50184962 hsa-miR-1270 0 1 0
chr17:50184851|50184962 hsa-miR-3154 1 0 0
chr17:50184851|50184962 hsa-miR-4456 0 1 0
chr17:50184851|50184962 hsa-miR-6085 0 1 0
chr17:50184851|50184962 hsa-miR-6090 1 1 0
chr17:50184851|50184962 hsa-miR-103a-2-5p 0 1 0
chr17:50184851|50184962 hsa-miR-504-3p 1 0 0
chr17:50184851|50184962 hsa-miR-6840-5p 0 1 0
chr17:50184851|50184962 hsa-miR-3622b-5p 1 0 0
chr17:50184851|50184962 hsa-miR-6871-5p 0 1 0
chr17:50184851|50184962 hsa-miR-185-3p 1 1 0
chr17:50184851|50184962 hsa-miR-6824-5p 1 0 0
chr17:50184851|50184962 hsa-miR-4684-3p 0 1 0
chr17:50184851|50184962 hsa-miR-1233-5p 1 1 0
chr17:50184851|50184962 hsa-miR-1273h-5p 1 0 0
chr17:50184851|50184962 hsa-miR-6778-5p 0 1 0
chr17:50184851|50184962 hsa-miR-1343-5p 1 0 0
chr17:50184851|50184962 hsa-miR-5001-5p 1 0 0
chr17:50184851|50184962 hsa-miR-6813-5p 1 1 0
chr17:50184851|50184962 hsa-miR-6851-5p 0 1 0
chr17:50184851|50184962 hsa-miR-6774-5p 1 0 0
chr17:50184851|50184962 hsa-miR-328-5p 1 0 0
chr17:50184851|50184962 hsa-miR-6848-5p 1 0 0
chr17:50184851|50184962 hsa-miR-10394-3p 1 0 0
chr17:50184851|50184962 hsa-miR-6797-3p 0 1 0
chr17:50184851|50184962 hsa-miR-103a-1-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr17:50184851|50184962
ORF Type ORF1
Protein Length 37
Nucleotide Length 111
Protein Sequence LGFSDCQRSLAIWRSHGSCNISPSFLRGSCRGSHQPL
Nucleotide Sequence CTGGGGTTCTCAGACTGCCAAAGAAGCCTTGCCATCTGGCGCTCCCATGGCTCTTGCAACATCTCCCCTTCGTTTTTGAGGGGGTCATGCCGGGGGAGCCACCAGCCCCTC
CircID chr17:50184851|50184962
ORF Type ORF2
Protein Length 32
Nucleotide Length 96
Protein Sequence MPKKPCHLALPWLLQHLPFVFEGVMPGEPPAP
Nucleotide Sequence CTGCCAAAGAAGCCTTGCCATCTGGCGCTCCCATGGCTCTTGCAACATCTCCCCTTCGTTTTTGAGGGGGTCATGCCGGGGGAGCCACCAGCCCCT
CircID chr17:50184851|50184962
ORF Type ORF3
Protein Length 29
Nucleotide Length 87
Protein Sequence MTPSKTKGRCCKSHGSARWQGFFGSLRTP
Nucleotide Sequence ATGACCCCCTCAAAAACGAAGGGGAGATGTTGCAAGAGCCATGGGAGCGCCAGATGGCAAGGCTTCTTTGGCAGTCTGAGAACCCCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab