CircRNA Information

General Information
circRNA Basic Information
CircID chr17:50185485|50185622
Strand +
CircType exon
Host Gene ENSG00000108821.12;
Algorism CIRI2;
Sequence AGTGATTGAATACAAAACCACCAAGACCTCCCGCCTGCCCATCATCGATGTGGCCCCCTTGGACGTTGGTGCCCCAGACCAGGAATTCGGCTTCGACGTTGGCCCTGTCTGCTTCCTGTAAACTCCCTCCATCCCAAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:50185485|50185622 hsa-miR-34b-5p 0 0 1
chr17:50185485|50185622 hsa-miR-34b-3p 0 0 1
chr17:50185485|50185622 hsa-miR-630 0 0 1
chr17:50185485|50185622 hsa-miR-637 0 0 1
chr17:50185485|50185622 hsa-miR-1324 0 0 1
chr17:50185485|50185622 hsa-miR-486-3p 0 0 1
chr17:50185485|50185622 hsa-miR-876-3p 0 0 1
chr17:50185485|50185622 hsa-miR-769-3p 1 0 1
chr17:50185485|50185622 hsa-miR-450b-3p 0 0 1
chr17:50185485|50185622 hsa-miR-323-5p 0 0 1
chr17:50185485|50185622 hsa-miR-608 1 0 0
chr17:50185485|50185622 hsa-miR-658 1 0 0
chr17:50185485|50185622 hsa-miR-762 1 0 0
chr17:50185485|50185622 hsa-miR-940 1 0 0
chr17:50185485|50185622 hsa-miR-1182 1 0 0
chr17:50185485|50185622 hsa-miR-1293 1 0 0
chr17:50185485|50185622 hsa-miR-2909 1 0 0
chr17:50185485|50185622 hsa-miR-3132 1 0 0
chr17:50185485|50185622 hsa-miR-3141 1 0 0
chr17:50185485|50185622 hsa-miR-3147 1 0 0
chr17:50185485|50185622 hsa-miR-3166 0 1 0
chr17:50185485|50185622 hsa-miR-1193 1 0 0
chr17:50185485|50185622 hsa-miR-4294 1 0 0
chr17:50185485|50185622 hsa-miR-4270 1 0 0
chr17:50185485|50185622 hsa-miR-3652 1 0 0
chr17:50185485|50185622 hsa-miR-3918 0 1 0
chr17:50185485|50185622 hsa-miR-4470 1 1 0
chr17:50185485|50185622 hsa-miR-3689c 1 0 0
chr17:50185485|50185622 hsa-miR-4488 1 0 0
chr17:50185485|50185622 hsa-miR-4489 1 0 0
chr17:50185485|50185622 hsa-miR-2392 1 0 0
chr17:50185485|50185622 hsa-miR-4507 1 0 0
chr17:50185485|50185622 hsa-miR-4510 1 1 0
chr17:50185485|50185622 hsa-miR-4533 1 0 0
chr17:50185485|50185622 hsa-miR-4534 1 0 0
chr17:50185485|50185622 hsa-miR-1587 1 0 0
chr17:50185485|50185622 hsa-miR-4651 1 0 0
chr17:50185485|50185622 hsa-miR-4657 1 0 0
chr17:50185485|50185622 hsa-miR-4673 1 0 0
chr17:50185485|50185622 hsa-miR-4688 1 0 0
chr17:50185485|50185622 hsa-miR-4706 1 0 0
chr17:50185485|50185622 hsa-miR-4739 1 0 0
chr17:50185485|50185622 hsa-miR-4779 1 0 0
chr17:50185485|50185622 hsa-miR-5572 1 1 0
chr17:50185485|50185622 hsa-miR-5698 1 0 0
chr17:50185485|50185622 hsa-miR-5787 1 0 0
chr17:50185485|50185622 hsa-miR-6081 1 0 0
chr17:50185485|50185622 hsa-miR-6127 1 1 0
chr17:50185485|50185622 hsa-miR-6129 0 1 0
chr17:50185485|50185622 hsa-miR-6133 1 0 0
chr17:50185485|50185622 hsa-miR-6860 1 0 0
chr17:50185485|50185622 hsa-miR-12114 1 0 0
chr17:50185485|50185622 hsa-miR-6734-5p 1 0 0
chr17:50185485|50185622 hsa-miR-671-5p 1 0 0
chr17:50185485|50185622 hsa-miR-6861-5p 1 0 0
chr17:50185485|50185622 hsa-miR-7106-5p 1 0 0
chr17:50185485|50185622 hsa-miR-6825-5p 1 0 0
chr17:50185485|50185622 hsa-miR-6799-5p 1 0 0
chr17:50185485|50185622 hsa-miR-6728-5p 1 1 0
chr17:50185485|50185622 hsa-miR-6804-5p 1 0 0
chr17:50185485|50185622 hsa-miR-5187-5p 1 0 0
chr17:50185485|50185622 hsa-miR-1227-5p 1 0 0
chr17:50185485|50185622 hsa-miR-6515-5p 1 0 0
chr17:50185485|50185622 hsa-miR-6089 1 0 0
chr17:50185485|50185622 hsa-miR-3192-5p 1 0 0
chr17:50185485|50185622 hsa-miR-6757-5p 1 0 0
chr17:50185485|50185622 hsa-miR-6880-5p 1 0 0
chr17:50185485|50185622 hsa-miR-7847-3p 1 0 0
chr17:50185485|50185622 hsa-miR-4695-5p 1 0 0
chr17:50185485|50185622 hsa-miR-6721-5p 1 0 0
chr17:50185485|50185622 hsa-miR-197-5p 1 0 0
chr17:50185485|50185622 hsa-miR-8069 1 0 0
chr17:50185485|50185622 hsa-miR-3189-5p 1 0 0
chr17:50185485|50185622 hsa-miR-3682-3p 1 0 0
chr17:50185485|50185622 hsa-miR-3663-5p 0 1 0
chr17:50185485|50185622 hsa-miR-6742-5p 1 0 0
chr17:50185485|50185622 hsa-miR-3180-3p 1 0 0
chr17:50185485|50185622 hsa-miR-6772-5p 1 0 0
chr17:50185485|50185622 hsa-miR-6732-5p 1 0 0
chr17:50185485|50185622 hsa-miR-3190-3p 1 0 0
chr17:50185485|50185622 hsa-miR-6805-5p 1 0 0
chr17:50185485|50185622 hsa-miR-3126-5p 1 0 0
chr17:50185485|50185622 hsa-miR-6760-5p 1 0 0
chr17:50185485|50185622 hsa-miR-6782-5p 1 0 0
chr17:50185485|50185622 hsa-miR-7109-5p 1 0 0
chr17:50185485|50185622 hsa-miR-4786-3p 1 0 0
chr17:50185485|50185622 hsa-miR-1229-5p 1 0 0
chr17:50185485|50185622 hsa-miR-4640-5p 1 0 0
chr17:50185485|50185622 hsa-miR-1908-5p 1 0 0
chr17:50185485|50185622 hsa-miR-1228-5p 1 0 0
chr17:50185485|50185622 hsa-miR-4690-5p 1 0 0
chr17:50185485|50185622 hsa-miR-149-3p 1 0 0
chr17:50185485|50185622 hsa-miR-3162-5p 1 0 0
chr17:50185485|50185622 hsa-miR-6781-5p 1 0 0
chr17:50185485|50185622 hsa-miR-6877-5p 1 0 0
chr17:50185485|50185622 hsa-miR-6513-5p 1 0 0
chr17:50185485|50185622 hsa-miR-4750-5p 1 0 0
chr17:50185485|50185622 hsa-miR-6767-5p 1 1 0
chr17:50185485|50185622 hsa-miR-329-5p 0 1 0
chr17:50185485|50185622 hsa-miR-1207-5p 1 0 0
chr17:50185485|50185622 hsa-miR-3689b-3p 1 0 0
chr17:50185485|50185622 hsa-miR-4763-3p 1 0 0
chr17:50185485|50185622 hsa-miR-6778-5p 1 0 0
chr17:50185485|50185622 hsa-miR-6787-5p 1 0 0
chr17:50185485|50185622 hsa-miR-6812-5p 1 0 0
chr17:50185485|50185622 hsa-miR-6816-5p 1 0 0
chr17:50185485|50185622 hsa-miR-3180 1 0 0
chr17:50185485|50185622 hsa-miR-5001-5p 1 0 0
chr17:50185485|50185622 hsa-miR-6737-5p 1 0 0
chr17:50185485|50185622 hsa-miR-6743-5p 1 0 0
chr17:50185485|50185622 hsa-miR-6752-5p 1 0 0
chr17:50185485|50185622 hsa-miR-6754-5p 1 0 0
chr17:50185485|50185622 hsa-miR-6803-5p 1 0 0
chr17:50185485|50185622 hsa-miR-6819-5p 1 0 0
chr17:50185485|50185622 hsa-miR-6842-5p 1 0 0
chr17:50185485|50185622 hsa-miR-6851-5p 1 0 0
chr17:50185485|50185622 hsa-miR-7110-5p 1 0 0
chr17:50185485|50185622 hsa-miR-11181-3p 1 0 0
chr17:50185485|50185622 hsa-miR-1249-5p 1 1 0
chr17:50185485|50185622 hsa-miR-6751-5p 1 0 0
chr17:50185485|50185622 hsa-miR-6779-5p 1 0 0
chr17:50185485|50185622 hsa-miR-6780a-5p 1 0 0
chr17:50185485|50185622 hsa-miR-6797-5p 1 1 0
chr17:50185485|50185622 hsa-miR-6875-5p 1 0 0
chr17:50185485|50185622 hsa-miR-6879-5p 1 0 0
chr17:50185485|50185622 hsa-miR-7111-5p 1 0 0
chr17:50185485|50185622 hsa-miR-3620-5p 1 0 0
chr17:50185485|50185622 hsa-miR-6836-5p 1 0 0
chr17:50185485|50185622 hsa-miR-6862-5p 1 0 0
chr17:50185485|50185622 hsa-miR-328-5p 1 0 0
chr17:50185485|50185622 hsa-miR-3689a-3p 1 0 0
chr17:50185485|50185622 hsa-miR-4726-5p 1 0 0
chr17:50185485|50185622 hsa-miR-6777-5p 1 0 0
chr17:50185485|50185622 hsa-miR-6795-5p 1 0 0
chr17:50185485|50185622 hsa-miR-6846-5p 1 0 0
chr17:50185485|50185622 hsa-miR-6848-5p 1 0 0
chr17:50185485|50185622 hsa-miR-6883-5p 1 0 0
chr17:50185485|50185622 hsa-miR-6887-5p 1 0 0
chr17:50185485|50185622 hsa-miR-6889-5p 1 0 0
chr17:50185485|50185622 hsa-miR-939-5p 1 0 0
chr17:50185485|50185622 hsa-miR-4769-5p 1 1 0
chr17:50185485|50185622 hsa-miR-365a-5p 1 0 0
chr17:50185485|50185622 hsa-miR-365b-5p 1 0 0
chr17:50185485|50185622 hsa-miR-6511b-5p 1 0 0
chr17:50185485|50185622 hsa-miR-3940-5p 1 0 0
chr17:50185485|50185622 hsa-miR-6855-5p 1 0 0
chr17:50185485|50185622 hsa-miR-4747-5p 1 0 0
chr17:50185485|50185622 hsa-miR-6876-5p 1 0 0
chr17:50185485|50185622 hsa-miR-6891-5p 1 0 0
chr17:50185485|50185622 hsa-miR-6785-5p 1 0 0
chr17:50185485|50185622 hsa-miR-6762-5p 1 0 0
chr17:50185485|50185622 hsa-miR-9851-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:50185485|50185622
ORF Type ORF1
Protein Length 28
Nucleotide Length 87
Protein Sequence MPIIDVAPLDVGAPDQEFGFDVGPVCFL
Nucleotide Sequence CTGCCCATCATCGATGTGGCCCCCTTGGACGTTGGTGCCCCAGACCAGGAATTCGGCTTCGACGTTGGCCCTGTCTGCTTCCTGTAA
CircID chr17:50185485|50185622
ORF Type ORF2
Protein Length 44
Nucleotide Length 132
Protein Sequence MNTKPPRPPACPSSMWPPWTLVPQTRNSASTLALSASCKLPPSQ
Nucleotide Sequence TTGAATACAAAACCACCAAGACCTCCCGCCTGCCCATCATCGATGTGGCCCCCTTGGACGTTGGTGCCCCAGACCAGGAATTCGGCTTCGACGTTGGCCCTGTCTGCTTCCTGTAAACTCCCTCCATCCCAA
CircID chr17:50185485|50185622
ORF Type ORF3
Protein Length 44
Nucleotide Length 132
Protein Sequence MEGVYRKQTGPTSKPNSWSGAPTSKGATSMMGRREVLVVLYSIT
Nucleotide Sequence ATGGAGGGAGTTTACAGGAAGCAGACAGGGCCAACGTCGAAGCCGAATTCCTGGTCTGGGGCACCAACGTCCAAGGGGGCCACATCGATGATGGGCAGGCGGGAGGTCTTGGTGGTTTTGTATTCAATCACT
CircID chr17:50185485|50185622
ORF Type ORF4
Protein Length 31
Nucleotide Length 96
Protein Sequence LGWREFTGSRQGQRRSRIPGLGHQRPRGPHR
Nucleotide Sequence TTGGGATGGAGGGAGTTTACAGGAAGCAGACAGGGCCAACGTCGAAGCCGAATTCCTGGTCTGGGGCACCAACGTCCAAGGGGGCCACATCGATGA
CircID chr17:50185485|50185622
ORF Type ORF5
Protein Length 27
Nucleotide Length 81
Protein Sequence MVWGTNVQGGHIDDGQAGGLGGFVFNH
Nucleotide Sequence CTGGTCTGGGGCACCAACGTCCAAGGGGGCCACATCGATGATGGGCAGGCGGGAGGTCTTGGTGGTTTTGTATTCAATCAC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab