CircRNA Information

General Information
circRNA Basic Information
CircID chr17:50185533|50185640
Strand +
CircType exon
Host Gene ENSG00000108821.12;
Algorism CIRI2;
Sequence CGGAGCCTGGGGCAAGACAGTGATTGAATACAAAACCACCAAGACCTCCCGCCTGCCCATCATCGATGTGGCCCCCTTGGACGTTGGTGCCCCAGACCAGGAATTCGG
circRNA Expression in different cancers

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circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:50185533|50185640 hsa-miR-34b-5p 0 0 1
chr17:50185533|50185640 hsa-miR-34b-3p 0 0 1
chr17:50185533|50185640 hsa-miR-431-5p 0 0 1
chr17:50185533|50185640 hsa-miR-431-3p 0 0 1
chr17:50185533|50185640 hsa-miR-484 0 0 1
chr17:50185533|50185640 hsa-miR-630 0 0 1
chr17:50185533|50185640 hsa-miR-637 0 0 1
chr17:50185533|50185640 hsa-miR-1208 0 0 1
chr17:50185533|50185640 hsa-miR-486-3p 0 0 1
chr17:50185533|50185640 hsa-miR-876-3p 0 0 1
chr17:50185533|50185640 hsa-miR-323-5p 0 0 1
chr17:50185533|50185640 hsa-miR-663a 1 0 0
chr17:50185533|50185640 hsa-miR-1182 1 0 0
chr17:50185533|50185640 hsa-miR-1293 1 0 0
chr17:50185533|50185640 hsa-miR-3141 1 0 0
chr17:50185533|50185640 hsa-miR-3147 1 0 0
chr17:50185533|50185640 hsa-miR-3652 1 0 0
chr17:50185533|50185640 hsa-miR-3689c 1 0 0
chr17:50185533|50185640 hsa-miR-4488 1 0 0
chr17:50185533|50185640 hsa-miR-4489 1 0 0
chr17:50185533|50185640 hsa-miR-2392 1 0 0
chr17:50185533|50185640 hsa-miR-4705 0 1 0
chr17:50185533|50185640 hsa-miR-4706 1 0 0
chr17:50185533|50185640 hsa-miR-6861-5p 1 0 0
chr17:50185533|50185640 hsa-miR-7106-5p 1 0 0
chr17:50185533|50185640 hsa-miR-6825-5p 1 0 0
chr17:50185533|50185640 hsa-miR-6799-5p 1 0 0
chr17:50185533|50185640 hsa-miR-1227-5p 1 0 0
chr17:50185533|50185640 hsa-miR-3192-5p 1 0 0
chr17:50185533|50185640 hsa-miR-6746-5p 1 0 0
chr17:50185533|50185640 hsa-miR-4722-5p 1 0 0
chr17:50185533|50185640 hsa-miR-8069 1 0 0
chr17:50185533|50185640 hsa-miR-3189-5p 1 0 0
chr17:50185533|50185640 hsa-miR-3682-3p 1 0 0
chr17:50185533|50185640 hsa-miR-3663-5p 0 1 0
chr17:50185533|50185640 hsa-miR-6732-5p 1 0 0
chr17:50185533|50185640 hsa-miR-6805-5p 1 0 0
chr17:50185533|50185640 hsa-miR-6798-5p 1 0 0
chr17:50185533|50185640 hsa-miR-4640-5p 1 0 0
chr17:50185533|50185640 hsa-miR-1908-5p 1 0 0
chr17:50185533|50185640 hsa-miR-1228-5p 1 0 0
chr17:50185533|50185640 hsa-miR-6771-5p 1 0 0
chr17:50185533|50185640 hsa-miR-149-3p 1 0 0
chr17:50185533|50185640 hsa-miR-6781-5p 1 0 0
chr17:50185533|50185640 hsa-miR-493-3p 1 0 0
chr17:50185533|50185640 hsa-miR-329-5p 0 1 0
chr17:50185533|50185640 hsa-miR-10400-5p 1 0 0
chr17:50185533|50185640 hsa-miR-1207-5p 1 0 0
chr17:50185533|50185640 hsa-miR-1233-5p 1 0 0
chr17:50185533|50185640 hsa-miR-1273h-5p 1 0 0
chr17:50185533|50185640 hsa-miR-3689b-3p 1 0 0
chr17:50185533|50185640 hsa-miR-4763-3p 1 0 0
chr17:50185533|50185640 hsa-miR-6778-5p 1 0 0
chr17:50185533|50185640 hsa-miR-6787-5p 1 0 0
chr17:50185533|50185640 hsa-miR-6743-5p 1 0 0
chr17:50185533|50185640 hsa-miR-6851-5p 1 0 0
chr17:50185533|50185640 hsa-miR-1249-5p 1 0 0
chr17:50185533|50185640 hsa-miR-6779-5p 1 0 0
chr17:50185533|50185640 hsa-miR-6879-5p 1 0 0
chr17:50185533|50185640 hsa-miR-7111-5p 1 0 0
chr17:50185533|50185640 hsa-miR-6862-5p 1 0 0
chr17:50185533|50185640 hsa-miR-10396b-5p 1 0 0
chr17:50185533|50185640 hsa-miR-328-5p 1 0 0
chr17:50185533|50185640 hsa-miR-3689a-3p 1 0 0
chr17:50185533|50185640 hsa-miR-6777-5p 1 0 0
chr17:50185533|50185640 hsa-miR-6846-5p 1 0 0
chr17:50185533|50185640 hsa-miR-6848-5p 1 0 0
chr17:50185533|50185640 hsa-miR-6883-5p 1 0 0
chr17:50185533|50185640 hsa-miR-6889-5p 1 0 0
chr17:50185533|50185640 hsa-miR-6785-5p 1 0 0
chr17:50185533|50185640 hsa-miR-9851-3p 0 1 0
chr17:50185533|50185640 hsa-miR-4676-3p 0 1 0
chr17:50185533|50185640 hsa-miR-10395-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:50185533|50185640
ORF Type ORF1
Protein Length 28
Nucleotide Length 84
Protein Sequence MNTKPPRPPACPSSMWPPWTLVPQTRNS
Nucleotide Sequence TTGAATACAAAACCACCAAGACCTCCCGCCTGCCCATCATCGATGTGGCCCCCTTGGACGTTGGTGCCCCAGACCAGGAATTCG
CircID chr17:50185533|50185640
ORF Type ORF2
Protein Length 33
Nucleotide Length 99
Protein Sequence MVWGTNVQGGHIDDGQAGGLGGFVFNHCLAPGS
Nucleotide Sequence CTGGTCTGGGGCACCAACGTCCAAGGGGGCCACATCGATGATGGGCAGGCGGGAGGTCTTGGTGGTTTTGTATTCAATCACTGTCTTGCCCCAGGCTCC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab