CircRNA Information

General Information
circRNA Basic Information
CircID chr17:50185555|50185942
Strand -
CircType exon
Host Gene ENSG00000108821.12;
Algorism CIRI2;
Sequence CAACGTCCAAGGGGGCCACATCGATGATGGGCAGGCGGGAGGTCTTGGTGGTTTTGTATTCAATCACTGTCTTGCCCCAGGCTCCGGTGTGACTCTGGGGTGGGGCGGAGACAACGGGAGGGGGCATTACCACGTGGGAGTGATGGAGAGAGGGCACTATGGCCTGGCCAAAAAGCCCAAGGCCGGAGAGGTGGGGCCCTGCCTGGGGATTCTGGGCACTCACCGTGCAGCCATCGACAGTGACGCTGTAGGTGAAGCGGCTGTTGCCCTCGGCGCGGATCTCGATCTCGTTGGAGCCCTGGAGGAGCAGGGCCTTCTTGAGGTTGCCAGTCTGCTGGTCCATGTAGGCCACGCTGTTCTTGCAGTGGTAGGTGATGTTCTGGGAGGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:50185555|50185942 hsa-miR-31-5p 0 0 1
chr17:50185555|50185942 hsa-miR-31-3p 0 0 1
chr17:50185555|50185942 hsa-miR-136-5p 0 0 1
chr17:50185555|50185942 hsa-miR-136-3p 0 0 1
chr17:50185555|50185942 hsa-miR-412-5p 0 0 1
chr17:50185555|50185942 hsa-miR-412-3p 0 0 1
chr17:50185555|50185942 hsa-miR-519e-5p 0 0 1
chr17:50185555|50185942 hsa-miR-519e-3p 0 0 1
chr17:50185555|50185942 hsa-miR-588 0 0 1
chr17:50185555|50185942 hsa-miR-604 0 0 1
chr17:50185555|50185942 hsa-miR-634 0 0 1
chr17:50185555|50185942 hsa-miR-635 0 0 1
chr17:50185555|50185942 hsa-miR-647 0 1 1
chr17:50185555|50185942 hsa-miR-661 0 0 1
chr17:50185555|50185942 hsa-miR-662 0 1 1
chr17:50185555|50185942 hsa-miR-922 0 0 1
chr17:50185555|50185942 hsa-miR-937-5p 0 0 1
chr17:50185555|50185942 hsa-miR-937-3p 0 0 1
chr17:50185555|50185942 hsa-miR-940 1 1 1
chr17:50185555|50185942 hsa-miR-1228-5p 0 0 1
chr17:50185555|50185942 hsa-miR-1228-3p 0 0 1
chr17:50185555|50185942 hsa-miR-1203 0 1 1
chr17:50185555|50185942 hsa-miR-663b 0 0 1
chr17:50185555|50185942 hsa-miR-1204 0 0 1
chr17:50185555|50185942 hsa-miR-1208 0 0 1
chr17:50185555|50185942 hsa-miR-1291 0 0 1
chr17:50185555|50185942 hsa-miR-296-5p 0 1 1
chr17:50185555|50185942 hsa-miR-486-3p 0 0 1
chr17:50185555|50185942 hsa-miR-532-3p 0 0 1
chr17:50185555|50185942 hsa-miR-1224-3p 0 1 1
chr17:50185555|50185942 hsa-miR-1207-5p 0 0 1
chr17:50185555|50185942 hsa-miR-483-3p 1 0 1
chr17:50185555|50185942 hsa-miR-515-3p 1 0 1
chr17:50185555|50185942 hsa-miR-371-3p 0 0 1
chr17:50185555|50185942 hsa-miR-220a 0 0 1
chr17:50185555|50185942 hsa-miR-499-3p 0 0 1
chr17:50185555|50185942 hsa-miR-365 0 0 1
chr17:50185555|50185942 hsa-miR-596 1 0 0
chr17:50185555|50185942 hsa-miR-638 1 0 0
chr17:50185555|50185942 hsa-miR-1913 1 0 0
chr17:50185555|50185942 hsa-miR-718 1 0 0
chr17:50185555|50185942 hsa-miR-3183 0 1 0
chr17:50185555|50185942 hsa-miR-4313 1 1 0
chr17:50185555|50185942 hsa-miR-4290 1 0 0
chr17:50185555|50185942 hsa-miR-4493 0 1 0
chr17:50185555|50185942 hsa-miR-4656 1 0 0
chr17:50185555|50185942 hsa-miR-4673 0 1 0
chr17:50185555|50185942 hsa-miR-5681b 1 0 0
chr17:50185555|50185942 hsa-miR-6069 0 1 0
chr17:50185555|50185942 hsa-miR-7703 1 0 0
chr17:50185555|50185942 hsa-miR-15a-3p 0 1 0
chr17:50185555|50185942 hsa-miR-6836-3p 1 0 0
chr17:50185555|50185942 hsa-miR-6892-3p 1 1 0
chr17:50185555|50185942 hsa-miR-874-5p 0 1 0
chr17:50185555|50185942 hsa-miR-6762-3p 1 0 0
chr17:50185555|50185942 hsa-miR-3189-5p 0 1 0
chr17:50185555|50185942 hsa-miR-6873-3p 0 1 0
chr17:50185555|50185942 hsa-miR-7110-3p 0 1 0
chr17:50185555|50185942 hsa-miR-6845-3p 1 0 0
chr17:50185555|50185942 hsa-miR-4713-5p 1 0 0
chr17:50185555|50185942 hsa-miR-6815-3p 1 0 0
chr17:50185555|50185942 hsa-miR-6884-3p 1 1 0
chr17:50185555|50185942 hsa-miR-5088-5p 0 1 0
chr17:50185555|50185942 hsa-miR-4763-5p 1 1 0
chr17:50185555|50185942 hsa-miR-6784-5p 0 1 0
chr17:50185555|50185942 hsa-miR-652-5p 1 0 0
chr17:50185555|50185942 hsa-miR-889-5p 0 1 0
chr17:50185555|50185942 hsa-miR-6821-3p 1 0 0
chr17:50185555|50185942 hsa-miR-7111-3p 1 1 0
chr17:50185555|50185942 hsa-miR-6776-3p 0 1 0
chr17:50185555|50185942 hsa-miR-6786-3p 1 0 0
chr17:50185555|50185942 hsa-miR-339-5p 0 1 0
chr17:50185555|50185942 hsa-miR-1184 0 1 0
chr17:50185555|50185942 hsa-miR-4776-5p 1 1 0
chr17:50185555|50185942 hsa-miR-3189-3p 0 1 0
chr17:50185555|50185942 hsa-miR-7160-3p 0 1 0
chr17:50185555|50185942 hsa-miR-4758-3p 0 1 0
chr17:50185555|50185942 hsa-miR-6887-3p 0 1 0
chr17:50185555|50185942 hsa-miR-208a-5p 0 1 0
chr17:50185555|50185942 hsa-miR-6778-3p 0 1 0
chr17:50185555|50185942 hsa-miR-3940-3p 1 0 0
chr17:50185555|50185942 hsa-miR-1296-5p 1 1 0
chr17:50185555|50185942 hsa-miR-2355-5p 0 1 0
chr17:50185555|50185942 hsa-miR-6794-3p 1 0 0
chr17:50185555|50185942 hsa-miR-6880-3p 1 0 0
chr17:50185555|50185942 hsa-miR-6851-3p 1 0 0
chr17:50185555|50185942 hsa-miR-6800-3p 0 1 0
chr17:50185555|50185942 hsa-miR-4771 0 1 0
chr17:50185555|50185942 hsa-miR-4485-5p 1 1 0
chr17:50185555|50185942 hsa-miR-6754-3p 0 1 0
chr17:50185555|50185942 hsa-miR-3620-5p 1 0 0
chr17:50185555|50185942 hsa-miR-6836-5p 1 1 0
chr17:50185555|50185942 hsa-miR-4685-5p 1 1 0
chr17:50185555|50185942 hsa-miR-7843-5p 0 1 0
chr17:50185555|50185942 hsa-miR-6791-3p 0 1 0
chr17:50185555|50185942 hsa-miR-10398-5p 1 0 0
chr17:50185555|50185942 hsa-miR-4722-3p 1 0 0
chr17:50185555|50185942 hsa-miR-6792-3p 0 1 0
chr17:50185555|50185942 hsa-miR-6837-5p 0 1 0
chr17:50185555|50185942 hsa-miR-6775-3p 0 1 0
chr17:50185555|50185942 hsa-miR-3059-5p 1 0 0
chr17:50185555|50185942 hsa-miR-4723-3p 0 1 0
chr17:50185555|50185942 hsa-miR-6769b-3p 0 1 0
chr17:50185555|50185942 hsa-miR-3085-3p 1 0 0
chr17:50185555|50185942 hsa-miR-6744-3p 1 0 0
chr17:50185555|50185942 hsa-miR-4691-5p 0 1 0
chr17:50185555|50185942 hsa-miR-6820-3p 1 0 0
chr17:50185555|50185942 hsa-miR-548aa 0 1 0
chr17:50185555|50185942 hsa-miR-548t-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:50185555|50185942
ORF Type ORF1
Protein Length 58
Nucleotide Length 177
Protein Sequence MSCPRLRCDSGVGRRQREGALPRGSDGERALWPGQKAQGRRGGALPGDSGHSPCSHRQ
Nucleotide Sequence CTGTCTTGCCCCAGGCTCCGGTGTGACTCTGGGGTGGGGCGGAGACAACGGGAGGGGGCATTACCACGTGGGAGTGATGGAGAGAGGGCACTATGGCCTGGCCAAAAAGCCCAAGGCCGGAGAGGTGGGGCCCTGCCTGGGGATTCTGGGCACTCACCGTGCAGCCATCGACAGTGA
CircID chr17:50185555|50185942
ORF Type ORF2
Protein Length 98
Nucleotide Length 294
Protein Sequence MGWGGDNGRGHYHVGVMERGHYGLAKKPKAGEVGPCLGILGTHRAAIDSDAVGEAAVALGADLDLVGALEEQGLLEVASLLVHVGHAVLAVVGDVLGG
Nucleotide Sequence CTGGGGTGGGGCGGAGACAACGGGAGGGGGCATTACCACGTGGGAGTGATGGAGAGAGGGCACTATGGCCTGGCCAAAAAGCCCAAGGCCGGAGAGGTGGGGCCCTGCCTGGGGATTCTGGGCACTCACCGTGCAGCCATCGACAGTGACGCTGTAGGTGAAGCGGCTGTTGCCCTCGGCGCGGATCTCGATCTCGTTGGAGCCCTGGAGGAGCAGGGCCTTCTTGAGGTTGCCAGTCTGCTGGTCCATGTAGGCCACGCTGTTCTTGCAGTGGTAGGTGATGTTCTGGGAGGC
CircID chr17:50185555|50185942
ORF Type ORF3
Protein Length 30
Nucleotide Length 93
Protein Sequence MAWPKSPRPERWGPAWGFWALTVQPSTVTL
Nucleotide Sequence ATGGCCTGGCCAAAAAGCCCAAGGCCGGAGAGGTGGGGCCCTGCCTGGGGATTCTGGGCACTCACCGTGCAGCCATCGACAGTGACGCTGTAG
CircID chr17:50185555|50185942
ORF Type ORF4
Protein Length 28
Nucleotide Length 87
Protein Sequence MLPSARISISLEPWRSRAFLRLPVCWSM
Nucleotide Sequence CTGTTGCCCTCGGCGCGGATCTCGATCTCGTTGGAGCCCTGGAGGAGCAGGGCCTTCTTGAGGTTGCCAGTCTGCTGGTCCATGTAG
CircID chr17:50185555|50185942
ORF Type ORF5
Protein Length 114
Nucleotide Length 342
Protein Sequence MDQQTGNLKKALLLQGSNEIEIRAEGNSRFTYSVTVDGCTVSAQNPQAGPHLSGLGLFGQAIVPSLHHSHVVMPPPVVSAPPQSHTGAWGKTVIEYKTTKTSRLPIIDVAPLDV
Nucleotide Sequence ATGGACCAGCAGACTGGCAACCTCAAGAAGGCCCTGCTCCTCCAGGGCTCCAACGAGATCGAGATCCGCGCCGAGGGCAACAGCCGCTTCACCTACAGCGTCACTGTCGATGGCTGCACGGTGAGTGCCCAGAATCCCCAGGCAGGGCCCCACCTCTCCGGCCTTGGGCTTTTTGGCCAGGCCATAGTGCCCTCTCTCCATCACTCCCACGTGGTAATGCCCCCTCCCGTTGTCTCCGCCCCACCCCAGAGTCACACCGGAGCCTGGGGCAAGACAGTGATTGAATACAAAACCACCAAGACCTCCCGCCTGCCCATCATCGATGTGGCCCCCTTGGACGTT
CircID chr17:50185555|50185942
ORF Type ORF6
Protein Length 36
Nucleotide Length 111
Protein Sequence MATSRRPCSSRAPTRSRSAPRATAASPTASLSMAAR
Nucleotide Sequence CTGGCAACCTCAAGAAGGCCCTGCTCCTCCAGGGCTCCAACGAGATCGAGATCCGCGCCGAGGGCAACAGCCGCTTCACCTACAGCGTCACTGTCGATGGCTGCACGGTGA
CircID chr17:50185555|50185942
ORF Type ORF7
Protein Length 101
Nucleotide Length 306
Protein Sequence MQEQRGLHGPADWQPQEGPAPPGLQRDRDPRRGQQPLHLQRHCRWLHGECPESPGRAPPLRPWAFWPGHSALSPSLPRGNAPSRCLRPTPESHRSLGQDSD
Nucleotide Sequence CTGCAAGAACAGCGTGGCCTACATGGACCAGCAGACTGGCAACCTCAAGAAGGCCCTGCTCCTCCAGGGCTCCAACGAGATCGAGATCCGCGCCGAGGGCAACAGCCGCTTCACCTACAGCGTCACTGTCGATGGCTGCACGGTGAGTGCCCAGAATCCCCAGGCAGGGCCCCACCTCTCCGGCCTTGGGCTTTTTGGCCAGGCCATAGTGCCCTCTCTCCATCACTCCCACGTGGTAATGCCCCCTCCCGTTGTCTCCGCCCCACCCCAGAGTCACACCGGAGCCTGGGGCAAGACAGTGATTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab