CircRNA Information

General Information
circRNA Basic Information
CircID chr17:50185926|50186361
Strand +
CircType exon
Host Gene ENSG00000108821.12;
Algorism CIRI2;
Sequence AAGAGGCATGTCTGGTTCGGCGAGAGCATGACCGATGGATTCCAGTTCGAGTATGGCGGCCAGGGCTCCGACCCTGCCGATGTGGCCATCCAGCTGACCTTCCTGCGCCTGATGTCCACCGAGGCCTCCCAGAACATCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:50185926|50186361 hsa-miR-493-5p 0 0 1
chr17:50185926|50186361 hsa-miR-493-3p 0 0 1
chr17:50185926|50186361 hsa-miR-588 0 1 1
chr17:50185926|50186361 hsa-miR-1287-5p 0 0 1
chr17:50185926|50186361 hsa-miR-1287-3p 0 0 1
chr17:50185926|50186361 hsa-miR-1207-3p 0 0 1
chr17:50185926|50186361 hsa-miR-1207-5p 1 0 1
chr17:50185926|50186361 hsa-miR-1233 0 0 1
chr17:50185926|50186361 hsa-miR-886-5p 0 0 1
chr17:50185926|50186361 hsa-miR-637 1 0 0
chr17:50185926|50186361 hsa-miR-3138 1 1 0
chr17:50185926|50186361 hsa-miR-3188 1 0 0
chr17:50185926|50186361 hsa-miR-3197 1 0 0
chr17:50185926|50186361 hsa-miR-4270 1 0 0
chr17:50185926|50186361 hsa-miR-3665 1 0 0
chr17:50185926|50186361 hsa-miR-4539 1 0 0
chr17:50185926|50186361 hsa-miR-4739 1 0 0
chr17:50185926|50186361 hsa-miR-4767 1 0 0
chr17:50185926|50186361 hsa-miR-7106-5p 1 0 0
chr17:50185926|50186361 hsa-miR-1233-3p 0 1 0
chr17:50185926|50186361 hsa-miR-6799-5p 1 0 0
chr17:50185926|50186361 hsa-miR-8071 1 0 0
chr17:50185926|50186361 hsa-miR-6089 1 0 0
chr17:50185926|50186361 hsa-miR-3192-5p 1 1 0
chr17:50185926|50186361 hsa-miR-6880-5p 1 0 0
chr17:50185926|50186361 hsa-miR-4722-5p 1 0 0
chr17:50185926|50186361 hsa-miR-6716-3p 0 1 0
chr17:50185926|50186361 hsa-miR-6786-5p 1 0 0
chr17:50185926|50186361 hsa-miR-1908-3p 1 0 0
chr17:50185926|50186361 hsa-miR-6771-5p 1 0 0
chr17:50185926|50186361 hsa-miR-149-3p 1 0 0
chr17:50185926|50186361 hsa-miR-4800-5p 1 0 0
chr17:50185926|50186361 hsa-miR-4750-5p 1 0 0
chr17:50185926|50186361 hsa-miR-214-3p 1 0 0
chr17:50185926|50186361 hsa-miR-1233-5p 1 0 0
chr17:50185926|50186361 hsa-miR-1273h-5p 1 1 0
chr17:50185926|50186361 hsa-miR-4763-3p 1 1 0
chr17:50185926|50186361 hsa-miR-6787-5p 1 0 0
chr17:50185926|50186361 hsa-miR-6893-5p 1 0 0
chr17:50185926|50186361 hsa-miR-6743-5p 1 0 0
chr17:50185926|50186361 hsa-miR-6754-5p 1 0 0
chr17:50185926|50186361 hsa-miR-6779-5p 0 1 0
chr17:50185926|50186361 hsa-miR-6780a-5p 1 0 0
chr17:50185926|50186361 hsa-miR-5196-5p 1 0 0
chr17:50185926|50186361 hsa-miR-6780b-5p 1 0 0
chr17:50185926|50186361 hsa-miR-10396b-5p 1 1 0
chr17:50185926|50186361 hsa-miR-328-5p 1 0 0
chr17:50185926|50186361 hsa-miR-3689a-3p 0 1 0
chr17:50185926|50186361 hsa-miR-6885-5p 1 0 0
chr17:50185926|50186361 hsa-miR-3679-5p 1 0 0
chr17:50185926|50186361 hsa-miR-6785-5p 1 0 0
chr17:50185926|50186361 hsa-miR-4757-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr17:50185926|50186361
ORF Type ORF1
Protein Length 37
Nucleotide Length 111
Protein Sequence MTDGFQFEYGGQGSDPADVAIQLTFLRLMSTEASQNI
Nucleotide Sequence ATGACCGATGGATTCCAGTTCGAGTATGGCGGCCAGGGCTCCGACCCTGCCGATGTGGCCATCCAGCTGACCTTCCTGCGCCTGATGTCCACCGAGGCCTCCCAGAACATC
CircID chr17:50185926|50186361
ORF Type ORF2
Protein Length 43
Nucleotide Length 129
Protein Sequence MVRREHDRWIPVRVWRPGLRPCRCGHPADLPAPDVHRGLPEHH
Nucleotide Sequence CTGGTTCGGCGAGAGCATGACCGATGGATTCCAGTTCGAGTATGGCGGCCAGGGCTCCGACCCTGCCGATGTGGCCATCCAGCTGACCTTCCTGCGCCTGATGTCCACCGAGGCCTCCCAGAACATCAC
CircID chr17:50185926|50186361
ORF Type ORF3
Protein Length 45
Nucleotide Length 135
Protein Sequence MFWEASVDIRRRKVSWMATSAGSEPWPPYSNWNPSVMLSPNQTCL
Nucleotide Sequence ATGTTCTGGGAGGCCTCGGTGGACATCAGGCGCAGGAAGGTCAGCTGGATGGCCACATCGGCAGGGTCGGAGCCCTGGCCGCCATACTCGAACTGGAATCCATCGGTCATGCTCTCGCCGAACCAGACATGCCTC
CircID chr17:50185926|50186361
ORF Type ORF4
Protein Length 44
Nucleotide Length 132
Protein Sequence MGGLGGHQAQEGQLDGHIGRVGALAAILELESIGHALAEPDMPL
Nucleotide Sequence CTGGGAGGCCTCGGTGGACATCAGGCGCAGGAAGGTCAGCTGGATGGCCACATCGGCAGGGTCGGAGCCCTGGCCGCCATACTCGAACTGGAATCCATCGGTCATGCTCTCGCCGAACCAGACATGCCTCTT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab