CircRNA Information

General Information
circRNA Basic Information
CircID chr17:50186317|50186507
Strand -
CircType exon
Host Gene ENSG00000108821.12;
Algorism CIRI2;
Sequence CTGGAATCCATCGGTCATGCTCTCGCCGAACCAGACATGCCTCTTGTCCTTGGGGTTCTTGCTGATGTACCAGTTCTTCTGGGCCACACTGGGCTGAGTGGGGTACACGCAGGTCTCACCAGTCTCCATGTTGCAGAAGACTTTGATGGCATCCAGGTTGCAGCCTTGGTTGGGGTCAATCCAGTACTCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:50186317|50186507 hsa-miR-520g-5p 0 0 1
chr17:50186317|50186507 hsa-miR-520g-3p 0 0 1
chr17:50186317|50186507 hsa-miR-520h 0 0 1
chr17:50186317|50186507 hsa-miR-545-5p 0 0 1
chr17:50186317|50186507 hsa-miR-545-3p 0 0 1
chr17:50186317|50186507 hsa-miR-619-5p 0 0 1
chr17:50186317|50186507 hsa-miR-619-3p 0 0 1
chr17:50186317|50186507 hsa-miR-1264 0 0 1
chr17:50186317|50186507 hsa-miR-1231 0 0 1
chr17:50186317|50186507 hsa-miR-663b 0 0 1
chr17:50186317|50186507 hsa-miR-1243 0 0 1
chr17:50186317|50186507 hsa-miR-1246 0 0 1
chr17:50186317|50186507 hsa-miR-1278 0 0 1
chr17:50186317|50186507 hsa-miR-512-5p 0 1 1
chr17:50186317|50186507 hsa-miR-769-5p 0 1 1
chr17:50186317|50186507 hsa-miR-199a-5p 0 1 1
chr17:50186317|50186507 hsa-miR-490-3p 0 1 1
chr17:50186317|50186507 hsa-miR-654-3p 0 0 1
chr17:50186317|50186507 hsa-miR-199b-5p 0 1 1
chr17:50186317|50186507 hsa-miR-582-3p 0 0 1
chr17:50186317|50186507 hsa-miR-548b-3p 0 1 1
chr17:50186317|50186507 hsa-miR-644 0 0 1
chr17:50186317|50186507 hsa-miR-544 0 0 1
chr17:50186317|50186507 hsa-miR-499-3p 0 0 1
chr17:50186317|50186507 hsa-miR-4302 0 1 0
chr17:50186317|50186507 hsa-miR-3918 1 0 0
chr17:50186317|50186507 hsa-miR-4491 1 0 0
chr17:50186317|50186507 hsa-miR-4511 0 1 0
chr17:50186317|50186507 hsa-miR-4515 1 0 0
chr17:50186317|50186507 hsa-miR-451b 0 1 0
chr17:50186317|50186507 hsa-miR-6076 0 1 0
chr17:50186317|50186507 hsa-miR-24-3p 1 0 0
chr17:50186317|50186507 hsa-miR-874-5p 1 0 0
chr17:50186317|50186507 hsa-miR-3622b-5p 1 0 0
chr17:50186317|50186507 hsa-miR-7108-5p 0 1 0
chr17:50186317|50186507 hsa-miR-6827-5p 1 0 0
chr17:50186317|50186507 hsa-miR-7855-5p 1 0 0
chr17:50186317|50186507 hsa-miR-4776-3p 1 0 0
chr17:50186317|50186507 hsa-miR-873-3p 0 1 0
chr17:50186317|50186507 hsa-miR-4772-3p 0 1 0
chr17:50186317|50186507 hsa-miR-6814-5p 1 1 0
chr17:50186317|50186507 hsa-miR-4649-3p 1 0 0
chr17:50186317|50186507 hsa-miR-4520-5p 0 1 0
chr17:50186317|50186507 hsa-miR-6775-5p 1 0 0
chr17:50186317|50186507 hsa-miR-1915-3p 1 0 0
chr17:50186317|50186507 hsa-miR-6862-5p 1 0 0
chr17:50186317|50186507 hsa-miR-4726-5p 1 0 0
chr17:50186317|50186507 hsa-miR-6785-5p 1 0 0
chr17:50186317|50186507 hsa-miR-4690-3p 0 1 0
chr17:50186317|50186507 hsa-miR-6839-5p 0 1 0
chr17:50186317|50186507 hsa-miR-302d-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr17:50186317|50186507
ORF Type ORF1
Protein Length 63
Nucleotide Length 189
Protein Sequence LESIGHALAEPDMPLVLGVLADVPVLLGHTGLSGVHAGLTSLHVAEDFDGIQVAALVGVNPVL
Nucleotide Sequence CTGGAATCCATCGGTCATGCTCTCGCCGAACCAGACATGCCTCTTGTCCTTGGGGTTCTTGCTGATGTACCAGTTCTTCTGGGCCACACTGGGCTGAGTGGGGTACACGCAGGTCTCACCAGTCTCCATGTTGCAGAAGACTTTGATGGCATCCAGGTTGCAGCCTTGGTTGGGGTCAATCCAGTACTC
CircID chr17:50186317|50186507
ORF Type ORF2
Protein Length 26
Nucleotide Length 81
Protein Sequence MLSPNQTCLLSLGFLLMYQFFWATLG
Nucleotide Sequence ATGCTCTCGCCGAACCAGACATGCCTCTTGTCCTTGGGGTTCTTGCTGATGTACCAGTTCTTCTGGGCCACACTGGGCTGA
CircID chr17:50186317|50186507
ORF Type ORF3
Protein Length 54
Nucleotide Length 165
Protein Sequence MTPTKAATWMPSKSSATWRLVRPACTPLSPVWPRRTGTSARTPRTRGMSGSARA
Nucleotide Sequence TTGACCCCAACCAAGGCTGCAACCTGGATGCCATCAAAGTCTTCTGCAACATGGAGACTGGTGAGACCTGCGTGTACCCCACTCAGCCCAGTGTGGCCCAGAAGAACTGGTACATCAGCAAGAACCCCAAGGACAAGAGGCATGTCTGGTTCGGCGAGAGCATGA
CircID chr17:50186317|50186507
ORF Type ORF4
Protein Length 37
Nucleotide Length 111
Protein Sequence MRVPHSAQCGPEELVHQQEPQGQEACLVRREHDRWIP
Nucleotide Sequence CTGCGTGTACCCCACTCAGCCCAGTGTGGCCCAGAAGAACTGGTACATCAGCAAGAACCCCAAGGACAAGAGGCATGTCTGGTTCGGCGAGAGCATGACCGATGGATTCCA
CircID chr17:50186317|50186507
ORF Type ORF5
Protein Length 52
Nucleotide Length 156
Protein Sequence MDAIKVFCNMETGETCVYPTQPSVAQKNWYISKNPKDKRHVWFGESMTDGFQ
Nucleotide Sequence CTGGATGCCATCAAAGTCTTCTGCAACATGGAGACTGGTGAGACCTGCGTGTACCCCACTCAGCCCAGTGTGGCCCAGAAGAACTGGTACATCAGCAAGAACCCCAAGGACAAGAGGCATGTCTGGTTCGGCGAGAGCATGACCGATGGATTCCAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab