CircRNA Information

General Information
circRNA Basic Information
CircID chr17:50186387|50186724
Strand -
CircType exon
Host Gene ENSG00000108821.12;
Algorism CIRI2;
Sequence CAGTTCTTCTGGGCCACACTGGGCTGAGTGGGGTACACGCAGGTCTCACCAGTCTCCATGTTGCAGAAGACTTTGATGGCATCCAGGTTGCAGCCTTGGTTGGGGTCAATCCAGTACTCTCCTGTGGTAGGGCAGGGCAAGATGGAGTCAGGGAAAGGGAGCAGCCAGCACCATATGGTAGGGGCACATATGGGCATGGGGACCCTGGCATGGCAGGAGTAGGAGGGAGGGAGAGGCTAGGGCAGGCCCTCACCACTCTTCCAGTCAGAGTGGCACATCTTGAGGTCACGGCAGGTGCGGGCGGGGTTCTTGCGGCTGCCCTCTGGGCTCCGGATGTT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:50186387|50186724 hsa-miR-204-5p 0 0 1
chr17:50186387|50186724 hsa-miR-204-3p 0 0 1
chr17:50186387|50186724 hsa-miR-211-5p 0 0 1
chr17:50186387|50186724 hsa-miR-211-3p 0 0 1
chr17:50186387|50186724 hsa-miR-345-5p 0 0 1
chr17:50186387|50186724 hsa-miR-345-3p 0 0 1
chr17:50186387|50186724 hsa-miR-520g-5p 0 0 1
chr17:50186387|50186724 hsa-miR-520g-3p 0 0 1
chr17:50186387|50186724 hsa-miR-520h 0 0 1
chr17:50186387|50186724 hsa-miR-604 0 0 1
chr17:50186387|50186724 hsa-miR-619-5p 0 0 1
chr17:50186387|50186724 hsa-miR-619-3p 0 0 1
chr17:50186387|50186724 hsa-miR-647 0 1 1
chr17:50186387|50186724 hsa-miR-1264 0 0 1
chr17:50186387|50186724 hsa-miR-874-5p 0 0 1
chr17:50186387|50186724 hsa-miR-874-3p 0 0 1
chr17:50186387|50186724 hsa-miR-1227-5p 0 0 1
chr17:50186387|50186724 hsa-miR-1227-3p 0 0 1
chr17:50186387|50186724 hsa-miR-1203 0 1 1
chr17:50186387|50186724 hsa-miR-663b 0 0 1
chr17:50186387|50186724 hsa-miR-1243 0 0 1
chr17:50186387|50186724 hsa-miR-1278 0 0 1
chr17:50186387|50186724 hsa-miR-512-5p 0 1 1
chr17:50186387|50186724 hsa-miR-769-5p 0 1 1
chr17:50186387|50186724 hsa-miR-146b-3p 0 0 1
chr17:50186387|50186724 hsa-miR-199a-5p 0 1 1
chr17:50186387|50186724 hsa-miR-490-3p 0 1 1
chr17:50186387|50186724 hsa-miR-576-3p 0 0 1
chr17:50186387|50186724 hsa-miR-455-5p 0 1 1
chr17:50186387|50186724 hsa-miR-140-3p 0 1 1
chr17:50186387|50186724 hsa-miR-199b-5p 0 1 1
chr17:50186387|50186724 hsa-miR-125a-5p 0 0 1
chr17:50186387|50186724 hsa-miR-548b-3p 0 1 1
chr17:50186387|50186724 hsa-miR-1274a 0 0 1
chr17:50186387|50186724 hsa-miR-125b 0 0 1
chr17:50186387|50186724 hsa-miR-7 0 0 1
chr17:50186387|50186724 hsa-miR-644 0 0 1
chr17:50186387|50186724 hsa-miR-544 0 0 1
chr17:50186387|50186724 hsa-miR-346 1 0 0
chr17:50186387|50186724 hsa-miR-1270 1 0 0
chr17:50186387|50186724 hsa-miR-1913 1 0 0
chr17:50186387|50186724 hsa-miR-1976 1 1 0
chr17:50186387|50186724 hsa-miR-4302 0 1 0
chr17:50186387|50186724 hsa-miR-3921 1 0 0
chr17:50186387|50186724 hsa-miR-4469 1 0 0
chr17:50186387|50186724 hsa-miR-4491 1 0 0
chr17:50186387|50186724 hsa-miR-4512 0 1 0
chr17:50186387|50186724 hsa-miR-4515 1 0 0
chr17:50186387|50186724 hsa-miR-4710 0 1 0
chr17:50186387|50186724 hsa-miR-5192 1 0 0
chr17:50186387|50186724 hsa-miR-6077 0 1 0
chr17:50186387|50186724 hsa-miR-18a-3p 0 1 0
chr17:50186387|50186724 hsa-miR-6892-3p 1 1 0
chr17:50186387|50186724 hsa-miR-139-3p 1 0 0
chr17:50186387|50186724 hsa-miR-6746-5p 1 0 0
chr17:50186387|50186724 hsa-miR-6875-3p 1 0 0
chr17:50186387|50186724 hsa-miR-6762-3p 1 1 0
chr17:50186387|50186724 hsa-miR-6842-3p 1 0 0
chr17:50186387|50186724 hsa-miR-7110-3p 1 1 0
chr17:50186387|50186724 hsa-miR-6817-3p 1 0 0
chr17:50186387|50186724 hsa-miR-1915-5p 1 0 0
chr17:50186387|50186724 hsa-miR-6845-3p 1 0 0
chr17:50186387|50186724 hsa-miR-877-3p 1 1 0
chr17:50186387|50186724 hsa-miR-7855-5p 1 1 0
chr17:50186387|50186724 hsa-miR-6735-3p 1 1 0
chr17:50186387|50186724 hsa-miR-6882-3p 1 0 0
chr17:50186387|50186724 hsa-miR-4713-5p 1 0 0
chr17:50186387|50186724 hsa-miR-7109-3p 1 1 0
chr17:50186387|50186724 hsa-miR-615-5p 0 1 0
chr17:50186387|50186724 hsa-miR-6772-3p 1 0 0
chr17:50186387|50186724 hsa-miR-1226-5p 0 1 0
chr17:50186387|50186724 hsa-miR-4763-5p 1 1 0
chr17:50186387|50186724 hsa-miR-6763-3p 1 0 0
chr17:50186387|50186724 hsa-miR-7108-3p 0 1 0
chr17:50186387|50186724 hsa-miR-1908-3p 1 1 0
chr17:50186387|50186724 hsa-miR-6894-3p 1 0 0
chr17:50186387|50186724 hsa-miR-7113-3p 1 0 0
chr17:50186387|50186724 hsa-miR-642b-5p 1 0 0
chr17:50186387|50186724 hsa-miR-6878-3p 1 1 0
chr17:50186387|50186724 hsa-miR-7111-3p 1 1 0
chr17:50186387|50186724 hsa-miR-4667-3p 1 1 0
chr17:50186387|50186724 hsa-miR-4446-5p 0 1 0
chr17:50186387|50186724 hsa-miR-378a-5p 1 1 0
chr17:50186387|50186724 hsa-miR-6769a-3p 1 0 0
chr17:50186387|50186724 hsa-miR-4776-3p 0 1 0
chr17:50186387|50186724 hsa-miR-7106-3p 1 1 0
chr17:50186387|50186724 hsa-miR-4732-3p 1 1 0
chr17:50186387|50186724 hsa-miR-873-3p 0 1 0
chr17:50186387|50186724 hsa-miR-4772-3p 0 1 0
chr17:50186387|50186724 hsa-miR-6804-3p 0 1 0
chr17:50186387|50186724 hsa-miR-6867-3p 0 1 0
chr17:50186387|50186724 hsa-miR-6752-3p 0 1 0
chr17:50186387|50186724 hsa-miR-6872-3p 0 1 0
chr17:50186387|50186724 hsa-miR-3605-3p 1 0 0
chr17:50186387|50186724 hsa-miR-4649-3p 1 0 0
chr17:50186387|50186724 hsa-miR-130b-5p 1 0 0
chr17:50186387|50186724 hsa-miR-6748-3p 1 1 0
chr17:50186387|50186724 hsa-miR-670-5p 0 1 0
chr17:50186387|50186724 hsa-miR-6734-3p 0 1 0
chr17:50186387|50186724 hsa-miR-3157-3p 0 1 0
chr17:50186387|50186724 hsa-miR-589-5p 0 1 0
chr17:50186387|50186724 hsa-miR-6732-3p 0 1 0
chr17:50186387|50186724 hsa-miR-4520-5p 0 1 0
chr17:50186387|50186724 hsa-miR-4685-3p 1 1 0
chr17:50186387|50186724 hsa-miR-4632-5p 0 1 0
chr17:50186387|50186724 hsa-miR-6735-5p 0 1 0
chr17:50186387|50186724 hsa-miR-3085-5p 0 1 0
chr17:50186387|50186724 hsa-miR-6799-3p 1 0 0
chr17:50186387|50186724 hsa-miR-7843-5p 0 1 0
chr17:50186387|50186724 hsa-miR-6877-3p 1 1 0
chr17:50186387|50186724 hsa-miR-10398-5p 1 0 0
chr17:50186387|50186724 hsa-miR-4722-3p 1 0 0
chr17:50186387|50186724 hsa-miR-6756-3p 1 0 0
chr17:50186387|50186724 hsa-miR-6805-3p 1 0 0
chr17:50186387|50186724 hsa-miR-6769b-3p 0 1 0
chr17:50186387|50186724 hsa-miR-6819-3p 1 1 0
chr17:50186387|50186724 hsa-miR-6823-3p 1 1 0
chr17:50186387|50186724 hsa-miR-3085-3p 0 1 0
chr17:50186387|50186724 hsa-miR-6744-3p 1 1 0
chr17:50186387|50186724 hsa-miR-6817-5p 0 1 0
chr17:50186387|50186724 hsa-miR-5006-3p 1 0 0
chr17:50186387|50186724 hsa-miR-4690-3p 0 1 0
chr17:50186387|50186724 hsa-miR-4769-3p 0 1 0
chr17:50186387|50186724 hsa-miR-7162-5p 1 0 0
chr17:50186387|50186724 hsa-miR-6820-3p 1 0 0
chr17:50186387|50186724 hsa-miR-301a-5p 0 1 0
chr17:50186387|50186724 hsa-miR-6839-5p 0 1 0
chr17:50186387|50186724 hsa-miR-302d-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr17:50186387|50186724
ORF Type ORF1
Protein Length 54
Nucleotide Length 165
Protein Sequence MLQKTLMASRLQPWLGSIQYSPVVGQGKMESGKGSSQHHMVGAHMGMGTLAWQE
Nucleotide Sequence ATGTTGCAGAAGACTTTGATGGCATCCAGGTTGCAGCCTTGGTTGGGGTCAATCCAGTACTCTCCTGTGGTAGGGCAGGGCAAGATGGAGTCAGGGAAAGGGAGCAGCCAGCACCATATGGTAGGGGCACATATGGGCATGGGGACCCTGGCATGGCAGGAGTAG
CircID chr17:50186387|50186724
ORF Type ORF2
Protein Length 110
Nucleotide Length 330
Protein Sequence MGHTGLSGVHAGLTSLHVAEDFDGIQVAALVGVNPVLSCGRAGQDGVREREQPAPYGRGTYGHGDPGMAGVGGRERLGQALTTLPVRVAHLEVTAGAGGVLAAALWAPDV
Nucleotide Sequence CTGGGCCACACTGGGCTGAGTGGGGTACACGCAGGTCTCACCAGTCTCCATGTTGCAGAAGACTTTGATGGCATCCAGGTTGCAGCCTTGGTTGGGGTCAATCCAGTACTCTCCTGTGGTAGGGCAGGGCAAGATGGAGTCAGGGAAAGGGAGCAGCCAGCACCATATGGTAGGGGCACATATGGGCATGGGGACCCTGGCATGGCAGGAGTAGGAGGGAGGGAGAGGCTAGGGCAGGCCCTCACCACTCTTCCAGTCAGAGTGGCACATCTTGAGGTCACGGCAGGTGCGGGCGGGGTTCTTGCGGCTGCCCTCTGGGCTCCGGATGTT
CircID chr17:50186387|50186724
ORF Type ORF3
Protein Length 65
Nucleotide Length 195
Protein Sequence MPICAPTIWCWLLPFPDSILPCPTTGEYWIDPNQGCNLDAIKVFCNMETGETCVYPTQPSVAQKN
Nucleotide Sequence ATGCCCATATGTGCCCCTACCATATGGTGCTGGCTGCTCCCTTTCCCTGACTCCATCTTGCCCTGCCCTACCACAGGAGAGTACTGGATTGACCCCAACCAAGGCTGCAACCTGGATGCCATCAAAGTCTTCTGCAACATGGAGACTGGTGAGACCTGCGTGTACCCCACTCAGCCCAGTGTGGCCCAGAAGAAC
CircID chr17:50186387|50186724
ORF Type ORF4
Protein Length 89
Nucleotide Length 267
Protein Sequence MTGRVVRACPSLSLPPTPAMPGSPCPYVPLPYGAGCSLSLTPSCPALPQESTGLTPTKAATWMPSKSSATWRLVRPACTPLSPVWPRRT
Nucleotide Sequence CTGACTGGAAGAGTGGTGAGGGCCTGCCCTAGCCTCTCCCTCCCTCCTACTCCTGCCATGCCAGGGTCCCCATGCCCATATGTGCCCCTACCATATGGTGCTGGCTGCTCCCTTTCCCTGACTCCATCTTGCCCTGCCCTACCACAGGAGAGTACTGGATTGACCCCAACCAAGGCTGCAACCTGGATGCCATCAAAGTCTTCTGCAACATGGAGACTGGTGAGACCTGCGTGTACCCCACTCAGCCCAGTGTGGCCCAGAAGAACT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab