CircRNA Information

General Information
circRNA Basic Information
CircID chr17:50188903|50189206
Strand -
CircType exon
Host Gene ENSG00000108821.12;
Algorism CIRI2;
Sequence CTCACGTCCAGATTCACCAGGGGGTCCAGCCAATCCAGGGGGGCCCATGGGACCAGGGGGACCACGTTCACCACTTGCTCCAGAGGGACCTTGTTTGCCAGGTTCACCCTAAGGGAGAAGAAAGAGTCAGGCCAGAGATAGGGTCTGGGAGGACCCTTGAGTCCGCTGGAGTCATCTCTACCAAATCTGTTCTCCTTGGCTCCGCCCCACTCCAAGTCCTGTGATGGTTTTTCTCAGGGCCCCCCAAGGTGAGGGGGGCACTTACAGAGGGGCCAGGAAGACCAGGGAAGCCTCTCTCTCCTCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:50188903|50189206 hsa-miR-122-5p 0 0 1
chr17:50188903|50189206 hsa-miR-122-3p 0 0 1
chr17:50188903|50189206 hsa-miR-143-5p 0 0 1
chr17:50188903|50189206 hsa-miR-143-3p 0 0 1
chr17:50188903|50189206 hsa-miR-185-5p 0 0 1
chr17:50188903|50189206 hsa-miR-185-3p 0 0 1
chr17:50188903|50189206 hsa-miR-302a-5p 0 0 1
chr17:50188903|50189206 hsa-miR-302a-3p 0 0 1
chr17:50188903|50189206 hsa-miR-302b-5p 0 0 1
chr17:50188903|50189206 hsa-miR-302b-3p 0 0 1
chr17:50188903|50189206 hsa-miR-302c-5p 0 0 1
chr17:50188903|50189206 hsa-miR-302c-3p 0 0 1
chr17:50188903|50189206 hsa-miR-302d-5p 0 0 1
chr17:50188903|50189206 hsa-miR-302d-3p 0 0 1
chr17:50188903|50189206 hsa-miR-372-5p 0 0 1
chr17:50188903|50189206 hsa-miR-372-3p 0 0 1
chr17:50188903|50189206 hsa-miR-373-5p 0 0 1
chr17:50188903|50189206 hsa-miR-373-3p 0 0 1
chr17:50188903|50189206 hsa-miR-379-5p 0 0 1
chr17:50188903|50189206 hsa-miR-379-3p 0 0 1
chr17:50188903|50189206 hsa-miR-326 0 0 1
chr17:50188903|50189206 hsa-miR-345-5p 0 0 1
chr17:50188903|50189206 hsa-miR-345-3p 0 0 1
chr17:50188903|50189206 hsa-miR-422a 0 0 1
chr17:50188903|50189206 hsa-miR-432-5p 0 0 1
chr17:50188903|50189206 hsa-miR-432-3p 0 0 1
chr17:50188903|50189206 hsa-miR-520e-5p 0 0 1
chr17:50188903|50189206 hsa-miR-520e-3p 0 0 1
chr17:50188903|50189206 hsa-miR-520b-5p 0 0 1
chr17:50188903|50189206 hsa-miR-520b-3p 0 0 1
chr17:50188903|50189206 hsa-miR-539-5p 0 0 1
chr17:50188903|50189206 hsa-miR-539-3p 0 0 1
chr17:50188903|50189206 hsa-miR-624-5p 0 0 1
chr17:50188903|50189206 hsa-miR-624-3p 0 0 1
chr17:50188903|50189206 hsa-miR-647 0 0 1
chr17:50188903|50189206 hsa-miR-766-5p 0 0 1
chr17:50188903|50189206 hsa-miR-766-3p 0 0 1
chr17:50188903|50189206 hsa-miR-890 0 0 1
chr17:50188903|50189206 hsa-miR-942-5p 0 0 1
chr17:50188903|50189206 hsa-miR-942-3p 0 0 1
chr17:50188903|50189206 hsa-miR-1291 0 1 1
chr17:50188903|50189206 hsa-miR-1275 0 0 1
chr17:50188903|50189206 hsa-miR-302e 0 0 1
chr17:50188903|50189206 hsa-miR-296-5p 0 1 1
chr17:50188903|50189206 hsa-miR-490-3p 0 0 1
chr17:50188903|50189206 hsa-miR-508-5p 0 1 1
chr17:50188903|50189206 hsa-miR-331-3p 0 1 1
chr17:50188903|50189206 hsa-miR-513a-5p 0 0 1
chr17:50188903|50189206 hsa-miR-125a-5p 0 0 1
chr17:50188903|50189206 hsa-miR-330-5p 0 0 1
chr17:50188903|50189206 hsa-miR-520d-3p 0 0 1
chr17:50188903|50189206 hsa-miR-519b-3p 0 0 1
chr17:50188903|50189206 hsa-miR-519c-3p 0 0 1
chr17:50188903|50189206 hsa-miR-520a-3p 0 0 1
chr17:50188903|50189206 hsa-miR-520c-3p 0 0 1
chr17:50188903|50189206 hsa-miR-548d-3p 0 0 1
chr17:50188903|50189206 hsa-miR-1274a 0 0 1
chr17:50188903|50189206 hsa-miR-125b 0 0 1
chr17:50188903|50189206 hsa-miR-642 0 0 1
chr17:50188903|50189206 hsa-miR-220c 0 0 1
chr17:50188903|50189206 hsa-miR-378 0 0 1
chr17:50188903|50189206 hsa-miR-516b 0 0 1
chr17:50188903|50189206 hsa-miR-519a 0 0 1
chr17:50188903|50189206 hsa-miR-492 0 1 0
chr17:50188903|50189206 hsa-miR-608 1 0 0
chr17:50188903|50189206 hsa-miR-762 1 0 0
chr17:50188903|50189206 hsa-miR-3128 0 1 0
chr17:50188903|50189206 hsa-miR-3166 0 1 0
chr17:50188903|50189206 hsa-miR-3176 0 1 0
chr17:50188903|50189206 hsa-miR-4306 0 1 0
chr17:50188903|50189206 hsa-miR-4319 0 1 0
chr17:50188903|50189206 hsa-miR-4251 0 1 0
chr17:50188903|50189206 hsa-miR-4287 0 1 0
chr17:50188903|50189206 hsa-miR-3135b 1 0 0
chr17:50188903|50189206 hsa-miR-4481 0 1 0
chr17:50188903|50189206 hsa-miR-4488 1 0 0
chr17:50188903|50189206 hsa-miR-4651 1 0 0
chr17:50188903|50189206 hsa-miR-6088 0 1 0
chr17:50188903|50189206 hsa-miR-6090 1 0 0
chr17:50188903|50189206 hsa-miR-378j 0 1 0
chr17:50188903|50189206 hsa-miR-8056 0 1 0
chr17:50188903|50189206 hsa-miR-8073 0 1 0
chr17:50188903|50189206 hsa-miR-8085 1 0 0
chr17:50188903|50189206 hsa-miR-4433b-3p 1 0 0
chr17:50188903|50189206 hsa-miR-6765-5p 1 0 0
chr17:50188903|50189206 hsa-miR-6861-5p 1 0 0
chr17:50188903|50189206 hsa-miR-25-5p 0 1 0
chr17:50188903|50189206 hsa-miR-6746-5p 1 0 0
chr17:50188903|50189206 hsa-miR-505-5p 0 1 0
chr17:50188903|50189206 hsa-miR-6842-3p 0 1 0
chr17:50188903|50189206 hsa-miR-3663-5p 0 1 0
chr17:50188903|50189206 hsa-miR-6742-5p 1 0 0
chr17:50188903|50189206 hsa-miR-3180-3p 1 1 0
chr17:50188903|50189206 hsa-miR-4753-3p 0 1 0
chr17:50188903|50189206 hsa-miR-6760-5p 1 0 0
chr17:50188903|50189206 hsa-miR-6782-5p 1 0 0
chr17:50188903|50189206 hsa-miR-3191-5p 0 1 0
chr17:50188903|50189206 hsa-miR-6830-3p 0 1 0
chr17:50188903|50189206 hsa-miR-4640-3p 0 1 0
chr17:50188903|50189206 hsa-miR-660-3p 0 1 0
chr17:50188903|50189206 hsa-miR-744-5p 0 1 0
chr17:50188903|50189206 hsa-miR-6859-3p 0 1 0
chr17:50188903|50189206 hsa-miR-454-5p 0 1 0
chr17:50188903|50189206 hsa-miR-371b-3p 0 1 0
chr17:50188903|50189206 hsa-miR-642a-5p 0 1 0
chr17:50188903|50189206 hsa-miR-221-5p 0 1 0
chr17:50188903|50189206 hsa-miR-6812-5p 1 1 0
chr17:50188903|50189206 hsa-miR-6816-5p 0 1 0
chr17:50188903|50189206 hsa-miR-1343-5p 1 0 0
chr17:50188903|50189206 hsa-miR-3180 1 1 0
chr17:50188903|50189206 hsa-miR-5001-5p 1 0 0
chr17:50188903|50189206 hsa-miR-6737-5p 1 0 0
chr17:50188903|50189206 hsa-miR-6754-5p 1 1 0
chr17:50188903|50189206 hsa-miR-6756-5p 1 1 0
chr17:50188903|50189206 hsa-miR-6803-5p 1 0 0
chr17:50188903|50189206 hsa-miR-6819-5p 1 1 0
chr17:50188903|50189206 hsa-miR-6842-5p 1 0 0
chr17:50188903|50189206 hsa-miR-6797-5p 1 0 0
chr17:50188903|50189206 hsa-miR-3620-5p 1 0 0
chr17:50188903|50189206 hsa-miR-10396b-5p 1 0 0
chr17:50188903|50189206 hsa-miR-1237-5p 1 1 0
chr17:50188903|50189206 hsa-miR-328-5p 1 0 0
chr17:50188903|50189206 hsa-miR-4685-5p 1 1 0
chr17:50188903|50189206 hsa-miR-4745-5p 1 1 0
chr17:50188903|50189206 hsa-miR-6846-5p 1 0 0
chr17:50188903|50189206 hsa-miR-6885-5p 0 1 0
chr17:50188903|50189206 hsa-miR-3940-5p 1 0 0
chr17:50188903|50189206 hsa-miR-4646-5p 1 0 0
chr17:50188903|50189206 hsa-miR-6724-5p 1 1 0
chr17:50188903|50189206 hsa-miR-6791-5p 1 0 0
chr17:50188903|50189206 hsa-miR-6753-3p 1 0 0
chr17:50188903|50189206 hsa-miR-6859-5p 1 0 0
chr17:50188903|50189206 hsa-miR-4768-5p 1 0 0
chr17:50188903|50189206 hsa-miR-6848-3p 0 1 0
chr17:50188903|50189206 hsa-miR-3922-3p 0 1 0
chr17:50188903|50189206 hsa-miR-6839-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


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circRNA Open Reading Frame (ORF)
CircID chr17:50188903|50189206
ORF Type ORF1
Protein Length 35
Nucleotide Length 108
Protein Sequence MGGPLSPLESSLPNLFSLAPPHSKSCDGFSQGPPR
Nucleotide Sequence CTGGGAGGACCCTTGAGTCCGCTGGAGTCATCTCTACCAAATCTGTTCTCCTTGGCTCCGCCCCACTCCAAGTCCTGTGATGGTTTTTCTCAGGGCCCCCCAAGGTGA

CircID chr17:50188903|50189206
ORF Type ORF2
Protein Length 27
Nucleotide Length 81
Protein Sequence MVFLRAPQGEGGTYRGARKTREASLSS
Nucleotide Sequence ATGGTTTTTCTCAGGGCCCCCCAAGGTGAGGGGGGCACTTACAGAGGGGCCAGGAAGACCAGGGAAGCCTCTCTCTCCTCT

CircID chr17:50188903|50189206
ORF Type ORF3
Protein Length 49
Nucleotide Length 150
Protein Sequence MLQRDLVCQVHPKGEERVRPEIGSGRTLESAGVISTKSVLLGSAPLQVL
Nucleotide Sequence TTGCTCCAGAGGGACCTTGTTTGCCAGGTTCACCCTAAGGGAGAAGAAAGAGTCAGGCCAGAGATAGGGTCTGGGAGGACCCTTGAGTCCGCTGGAGTCATCTCTACCAAATCTGTTCTCCTTGGCTCCGCCCCACTCCAAGTCCTGTGA

CircID chr17:50188903|50189206
ORF Type ORF4
Protein Length 47
Nucleotide Length 144
Protein Sequence MGGPEKNHHRTWSGAEPRRTDLVEMTPADSRVLPDPISGLTLSSPLG
Nucleotide Sequence TTGGGGGGCCCTGAGAAAAACCATCACAGGACTTGGAGTGGGGCGGAGCCAAGGAGAACAGATTTGGTAGAGATGACTCCAGCGGACTCAAGGGTCCTCCCAGACCCTATCTCTGGCCTGACTCTTTCTTCTCCCTTAGGGTGA

CircID chr17:50188903|50189206
ORF Type ORF5
Protein Length 71
Nucleotide Length 213
Protein Sequence MEWGGAKENRFGRDDSSGLKGPPRPYLWPDSFFSLRVNLANKVPLEQVVNVVPLVPWAPLDWLDPLVNLDV
Nucleotide Sequence TTGGAGTGGGGCGGAGCCAAGGAGAACAGATTTGGTAGAGATGACTCCAGCGGACTCAAGGGTCCTCCCAGACCCTATCTCTGGCCTGACTCTTTCTTCTCCCTTAGGGTGAACCTGGCAAACAAGGTCCCTCTGGAGCAAGTGGTGAACGTGGTCCCCCTGGTCCCATGGGCCCCCCTGGATTGGCTGGACCCCCTGGTGAATCTGGACGTG

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites