CircRNA Information

General Information
circRNA Basic Information
CircID chr17:50188956|50189483
Strand -
CircType exon
Host Gene ENSG00000108821.12;
Algorism CIRI2;
Sequence CAGGGGGACCACGTTCACCACTTGCTCCAGAGGGACCTTGTTTGCCAGGTTCACCAGAGGGGCCAGGAAGACCAGGGAAGCCTCTCTCTCCTCTCTGACCAGGCAGGCCGACCACACCACGCTGTCCAGCAATACCTTGAGGCCCGGGAGTACCAGGAGCACCAGCAGGACCATCAGCACCAGGGGATCCTTTCTCGCCAGCAGGGCCAGGGGGACCAGGGGGACCAACTTCACCAGGACGTCCAGCAGGGCCAGTCTCACCACGGGGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:50188956|50189483 hsa-miR-137-5p 0 0 1
chr17:50188956|50189483 hsa-miR-137-3p 0 0 1
chr17:50188956|50189483 hsa-miR-185-5p 0 0 1
chr17:50188956|50189483 hsa-miR-185-3p 0 0 1
chr17:50188956|50189483 hsa-miR-370-5p 0 0 1
chr17:50188956|50189483 hsa-miR-370-3p 0 0 1
chr17:50188956|50189483 hsa-miR-328-5p 0 0 1
chr17:50188956|50189483 hsa-miR-328-3p 0 0 1
chr17:50188956|50189483 hsa-miR-133b 0 0 1
chr17:50188956|50189483 hsa-miR-193b-5p 0 0 1
chr17:50188956|50189483 hsa-miR-193b-3p 0 0 1
chr17:50188956|50189483 hsa-miR-624-5p 0 0 1
chr17:50188956|50189483 hsa-miR-624-3p 0 0 1
chr17:50188956|50189483 hsa-miR-661 0 0 1
chr17:50188956|50189483 hsa-miR-1234-3p 0 0 1
chr17:50188956|50189483 hsa-miR-1287-5p 0 0 1
chr17:50188956|50189483 hsa-miR-1287-3p 0 0 1
chr17:50188956|50189483 hsa-miR-1291 0 0 1
chr17:50188956|50189483 hsa-miR-1234 0 0 1
chr17:50188956|50189483 hsa-miR-490-3p 0 0 1
chr17:50188956|50189483 hsa-miR-331-3p 0 0 1
chr17:50188956|50189483 hsa-miR-193a-3p 0 0 1
chr17:50188956|50189483 hsa-miR-1274a 0 0 1
chr17:50188956|50189483 hsa-miR-642 0 0 1
chr17:50188956|50189483 hsa-miR-138 0 0 1
chr17:50188956|50189483 hsa-miR-516b 0 0 1
chr17:50188956|50189483 hsa-miR-1254 0 0 1
chr17:50188956|50189483 hsa-miR-133a 0 0 1
chr17:50188956|50189483 hsa-miR-638 1 0 0
chr17:50188956|50189483 hsa-miR-3138 1 0 0
chr17:50188956|50189483 hsa-miR-4313 1 0 0
chr17:50188956|50189483 hsa-miR-4281 1 0 0
chr17:50188956|50189483 hsa-miR-3907 1 0 0
chr17:50188956|50189483 hsa-miR-1268b 1 0 0
chr17:50188956|50189483 hsa-miR-3135b 1 0 0
chr17:50188956|50189483 hsa-miR-4686 1 0 0
chr17:50188956|50189483 hsa-miR-4739 1 0 0
chr17:50188956|50189483 hsa-miR-6090 1 0 0
chr17:50188956|50189483 hsa-miR-6860 1 0 0
chr17:50188956|50189483 hsa-miR-8075 1 0 0
chr17:50188956|50189483 hsa-miR-138-5p 1 0 0
chr17:50188956|50189483 hsa-miR-150-3p 1 0 0
chr17:50188956|50189483 hsa-miR-323a-5p 1 0 0
chr17:50188956|50189483 hsa-miR-3692-5p 1 0 0
chr17:50188956|50189483 hsa-miR-7114-5p 1 0 0
chr17:50188956|50189483 hsa-miR-6741-5p 1 0 0
chr17:50188956|50189483 hsa-miR-874-3p 1 0 0
chr17:50188956|50189483 hsa-miR-939-3p 1 0 0
chr17:50188956|50189483 hsa-miR-7109-5p 1 0 0
chr17:50188956|50189483 hsa-miR-2277-3p 1 0 0
chr17:50188956|50189483 hsa-miR-6757-3p 1 0 0
chr17:50188956|50189483 hsa-miR-6749-5p 1 0 0
chr17:50188956|50189483 hsa-miR-4640-3p 1 0 0
chr17:50188956|50189483 hsa-miR-1237-3p 1 0 0
chr17:50188956|50189483 hsa-miR-4761-5p 1 0 0
chr17:50188956|50189483 hsa-miR-541-5p 1 0 0
chr17:50188956|50189483 hsa-miR-6737-5p 1 0 0
chr17:50188956|50189483 hsa-miR-7107-5p 1 0 0
chr17:50188956|50189483 hsa-miR-6774-5p 1 0 0
chr17:50188956|50189483 hsa-miR-4632-5p 1 0 0
chr17:50188956|50189483 hsa-miR-4745-3p 1 0 0
chr17:50188956|50189483 hsa-miR-4745-5p 1 0 0
chr17:50188956|50189483 hsa-miR-3187-5p 1 0 0
chr17:50188956|50189483 hsa-miR-6856-5p 1 0 0
chr17:50188956|50189483 hsa-miR-6799-3p 1 0 0
chr17:50188956|50189483 hsa-miR-6791-5p 1 0 0
chr17:50188956|50189483 hsa-miR-6805-3p 1 0 0
chr17:50188956|50189483 hsa-miR-6810-3p 1 0 0
chr17:50188956|50189483 hsa-miR-6775-3p 1 0 0
chr17:50188956|50189483 hsa-miR-6848-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr17:50188956|50189483
ORF Type ORF1
Protein Length 83
Nucleotide Length 249
Protein Sequence MLQRDLVCQVHQRGQEDQGSLSLLSDQAGRPHHAVQQYLEAREYQEHQQDHQHQGILSRQQGQGDQGDQLHQDVQQGQSHHGD
Nucleotide Sequence TTGCTCCAGAGGGACCTTGTTTGCCAGGTTCACCAGAGGGGCCAGGAAGACCAGGGAAGCCTCTCTCTCCTCTCTGACCAGGCAGGCCGACCACACCACGCTGTCCAGCAATACCTTGAGGCCCGGGAGTACCAGGAGCACCAGCAGGACCATCAGCACCAGGGGATCCTTTCTCGCCAGCAGGGCCAGGGGGACCAGGGGGACCAACTTCACCAGGACGTCCAGCAGGGCCAGTCTCACCACGGGGAC
CircID chr17:50188956|50189483
ORF Type ORF2
Protein Length 77
Nucleotide Length 231
Protein Sequence MFARFTRGARKTREASLSSLTRQADHTTLSSNTLRPGSTRSTSRTISTRGSFLASRARGTRGTNFTRTSSRASLTTG
Nucleotide Sequence TTGTTTGCCAGGTTCACCAGAGGGGCCAGGAAGACCAGGGAAGCCTCTCTCTCCTCTCTGACCAGGCAGGCCGACCACACCACGCTGTCCAGCAATACCTTGAGGCCCGGGAGTACCAGGAGCACCAGCAGGACCATCAGCACCAGGGGATCCTTTCTCGCCAGCAGGGCCAGGGGGACCAGGGGGACCAACTTCACCAGGACGTCCAGCAGGGCCAGTCTCACCACGGGG
CircID chr17:50188956|50189483
ORF Type ORF3
Protein Length 85
Nucleotide Length 255
Protein Sequence MALLDVLVKLVPLVPLALLARKDPLVLMVLLVLLVLPGLKVLLDSVVWSACLVREEREASLVFLAPLVNLANKVPLEQVVNVVPL
Nucleotide Sequence CTGGCCCTGCTGGACGTCCTGGTGAAGTTGGTCCCCCTGGTCCCCCTGGCCCTGCTGGCGAGAAAGGATCCCCTGGTGCTGATGGTCCTGCTGGTGCTCCTGGTACTCCCGGGCCTCAAGGTATTGCTGGACAGCGTGGTGTGGTCGGCCTGCCTGGTCAGAGAGGAGAGAGAGGCTTCCCTGGTCTTCCTGGCCCCTCTGGTGAACCTGGCAAACAAGGTCCCTCTGGAGCAAGTGGTGAACGTGGTCCCCCTG
CircID chr17:50188956|50189483
ORF Type ORF4
Protein Length 35
Nucleotide Length 105
Protein Sequence MPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPP
Nucleotide Sequence CTGCCTGGTCAGAGAGGAGAGAGAGGCTTCCCTGGTCTTCCTGGCCCCTCTGGTGAACCTGGCAAACAAGGTCCCTCTGGAGCAAGTGGTGAACGTGGTCCCCCT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab