CircRNA Information

General Information
circRNA Basic Information
CircID chr17:50189168|50189732
Strand -
CircType exon
Host Gene ENSG00000108821.12;
Algorism CIRI2;
Sequence AGAGGGGCCAGGAAGACCAGGGAAGCCTCTCTCTCCTCTCTGACCAGGCAGGCCGACCACACCACGCTGTCCAGCAATACCTTGAGGCCCGGGAGTACCAGGAGCACCAGCAGGACCATCAGCACCAGGGGATCCTTTCTCGCCAGCAGGGCCAGGGGGACCAGGGGGACCAACTTCACCAGGACGTCCAGCAGGGCCAGTCTCACCACGGGGACCTTTGCCGCCTTCTTTGCCAGCAGGACCAGGAGGGCCAGGGGGTCCAGCATTTCCAGAGGGGCCAGGAGGACCGACTCGGCCAGCAGCACCAGGGAAACCAGTAGCACC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:50189168|50189732 hsa-miR-137-5p 0 0 1
chr17:50189168|50189732 hsa-miR-137-3p 0 0 1
chr17:50189168|50189732 hsa-miR-185-5p 0 0 1
chr17:50189168|50189732 hsa-miR-185-3p 0 0 1
chr17:50189168|50189732 hsa-miR-370-5p 0 0 1
chr17:50189168|50189732 hsa-miR-370-3p 0 0 1
chr17:50189168|50189732 hsa-miR-328-5p 0 0 1
chr17:50189168|50189732 hsa-miR-328-3p 0 0 1
chr17:50189168|50189732 hsa-miR-133b 0 1 1
chr17:50189168|50189732 hsa-miR-193b-5p 0 0 1
chr17:50189168|50189732 hsa-miR-193b-3p 0 0 1
chr17:50189168|50189732 hsa-miR-661 1 0 1
chr17:50189168|50189732 hsa-miR-1234-3p 0 0 1
chr17:50189168|50189732 hsa-miR-1287-5p 0 0 1
chr17:50189168|50189732 hsa-miR-1287-3p 0 0 1
chr17:50189168|50189732 hsa-miR-1291 0 1 1
chr17:50189168|50189732 hsa-miR-1299 0 0 1
chr17:50189168|50189732 hsa-miR-1234 0 0 1
chr17:50189168|50189732 hsa-miR-331-3p 0 1 1
chr17:50189168|50189732 hsa-miR-875-3p 0 0 1
chr17:50189168|50189732 hsa-miR-193a-3p 0 0 1
chr17:50189168|50189732 hsa-miR-1274a 0 0 1
chr17:50189168|50189732 hsa-miR-138 0 0 1
chr17:50189168|50189732 hsa-miR-1254 0 0 1
chr17:50189168|50189732 hsa-miR-133a 0 0 1
chr17:50189168|50189732 hsa-miR-326 1 0 0
chr17:50189168|50189732 hsa-miR-596 1 0 0
chr17:50189168|50189732 hsa-miR-612 1 0 0
chr17:50189168|50189732 hsa-miR-638 1 0 0
chr17:50189168|50189732 hsa-miR-1294 0 1 0
chr17:50189168|50189732 hsa-miR-548q 0 1 0
chr17:50189168|50189732 hsa-miR-3138 1 0 0
chr17:50189168|50189732 hsa-miR-3185 1 1 0
chr17:50189168|50189732 hsa-miR-4306 0 1 0
chr17:50189168|50189732 hsa-miR-4313 1 1 0
chr17:50189168|50189732 hsa-miR-4290 0 1 0
chr17:50189168|50189732 hsa-miR-3615 1 0 0
chr17:50189168|50189732 hsa-miR-3907 1 1 0
chr17:50189168|50189732 hsa-miR-3911 1 0 0
chr17:50189168|50189732 hsa-miR-1268b 1 0 0
chr17:50189168|50189732 hsa-miR-4421 0 1 0
chr17:50189168|50189732 hsa-miR-3135b 1 0 0
chr17:50189168|50189732 hsa-miR-4512 0 1 0
chr17:50189168|50189732 hsa-miR-4678 0 1 0
chr17:50189168|50189732 hsa-miR-4686 1 1 0
chr17:50189168|50189732 hsa-miR-4734 1 0 0
chr17:50189168|50189732 hsa-miR-4739 1 0 0
chr17:50189168|50189732 hsa-miR-4741 1 0 0
chr17:50189168|50189732 hsa-miR-5090 1 0 0
chr17:50189168|50189732 hsa-miR-5680 0 1 0
chr17:50189168|50189732 hsa-miR-6131 1 1 0
chr17:50189168|50189732 hsa-miR-6860 1 0 0
chr17:50189168|50189732 hsa-miR-8075 1 1 0
chr17:50189168|50189732 hsa-miR-138-5p 1 0 0
chr17:50189168|50189732 hsa-miR-29b-1-5p 0 1 0
chr17:50189168|50189732 hsa-miR-150-3p 1 0 0
chr17:50189168|50189732 hsa-miR-6749-3p 1 0 0
chr17:50189168|50189732 hsa-miR-3194-3p 1 0 0
chr17:50189168|50189732 hsa-miR-323a-5p 1 0 0
chr17:50189168|50189732 hsa-miR-29b-2-5p 0 1 0
chr17:50189168|50189732 hsa-miR-3692-5p 1 1 0
chr17:50189168|50189732 hsa-miR-296-5p 1 0 0
chr17:50189168|50189732 hsa-miR-6875-3p 1 0 0
chr17:50189168|50189732 hsa-miR-6741-5p 1 0 0
chr17:50189168|50189732 hsa-miR-197-5p 1 0 0
chr17:50189168|50189732 hsa-miR-874-3p 1 0 0
chr17:50189168|50189732 hsa-miR-7108-5p 1 0 0
chr17:50189168|50189732 hsa-miR-3663-5p 0 1 0
chr17:50189168|50189732 hsa-miR-423-3p 1 0 0
chr17:50189168|50189732 hsa-miR-6765-3p 1 0 0
chr17:50189168|50189732 hsa-miR-6821-5p 1 0 0
chr17:50189168|50189732 hsa-miR-939-3p 1 0 0
chr17:50189168|50189732 hsa-miR-6772-3p 1 1 0
chr17:50189168|50189732 hsa-miR-7109-5p 1 0 0
chr17:50189168|50189732 hsa-miR-2277-3p 1 0 0
chr17:50189168|50189732 hsa-miR-6757-3p 1 0 0
chr17:50189168|50189732 hsa-miR-885-3p 1 1 0
chr17:50189168|50189732 hsa-miR-7113-3p 0 1 0
chr17:50189168|50189732 hsa-miR-485-5p 1 1 0
chr17:50189168|50189732 hsa-miR-6749-5p 1 1 0
chr17:50189168|50189732 hsa-miR-4638-3p 1 0 0
chr17:50189168|50189732 hsa-miR-4446-5p 0 1 0
chr17:50189168|50189732 hsa-miR-4640-3p 1 1 0
chr17:50189168|50189732 hsa-miR-7152-3p 0 1 0
chr17:50189168|50189732 hsa-miR-1237-3p 1 0 0
chr17:50189168|50189732 hsa-miR-660-3p 1 1 0
chr17:50189168|50189732 hsa-miR-2276-5p 0 1 0
chr17:50189168|50189732 hsa-miR-6801-5p 0 1 0
chr17:50189168|50189732 hsa-miR-6752-3p 1 0 0
chr17:50189168|50189732 hsa-miR-671-3p 1 0 0
chr17:50189168|50189732 hsa-miR-6886-3p 1 0 0
chr17:50189168|50189732 hsa-miR-5088-3p 1 0 0
chr17:50189168|50189732 hsa-miR-6859-3p 0 1 0
chr17:50189168|50189732 hsa-miR-518c-5p 0 1 0
chr17:50189168|50189732 hsa-miR-541-5p 1 0 0
chr17:50189168|50189732 hsa-miR-133a-3p 0 1 0
chr17:50189168|50189732 hsa-miR-1207-5p 1 0 0
chr17:50189168|50189732 hsa-miR-6737-5p 1 0 0
chr17:50189168|50189732 hsa-miR-6819-5p 1 0 0
chr17:50189168|50189732 hsa-miR-7107-5p 1 0 0
chr17:50189168|50189732 hsa-miR-10401-5p 1 0 0
chr17:50189168|50189732 hsa-miR-6852-3p 1 0 0
chr17:50189168|50189732 hsa-miR-4632-5p 1 0 0
chr17:50189168|50189732 hsa-miR-4745-3p 1 0 0
chr17:50189168|50189732 hsa-miR-4745-5p 1 0 0
chr17:50189168|50189732 hsa-miR-3187-5p 1 1 0
chr17:50189168|50189732 hsa-miR-6758-5p 0 1 0
chr17:50189168|50189732 hsa-miR-6856-5p 1 1 0
chr17:50189168|50189732 hsa-miR-6799-3p 1 1 0
chr17:50189168|50189732 hsa-miR-6791-3p 1 0 0
chr17:50189168|50189732 hsa-miR-6791-5p 1 0 0
chr17:50189168|50189732 hsa-miR-6893-3p 0 1 0
chr17:50189168|50189732 hsa-miR-9851-5p 0 1 0
chr17:50189168|50189732 hsa-miR-6792-3p 1 0 0
chr17:50189168|50189732 hsa-miR-6805-3p 1 0 0
chr17:50189168|50189732 hsa-miR-6810-3p 1 0 0
chr17:50189168|50189732 hsa-miR-6775-3p 1 0 0
chr17:50189168|50189732 hsa-miR-3085-3p 1 0 0
chr17:50189168|50189732 hsa-miR-6744-3p 0 1 0
chr17:50189168|50189732 hsa-miR-4691-5p 1 0 0
chr17:50189168|50189732 hsa-miR-6848-3p 0 1 0
chr17:50189168|50189732 hsa-miR-6764-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr17:50189168|50189732
ORF Type ORF1
Protein Length 95
Nucleotide Length 285
Protein Sequence MTRQADHTTLSSNTLRPGSTRSTSRTISTRGSFLASRARGTRGTNFTRTSSRASLTTGTFAAFFASRTRRARGSSISRGARRTDSASSTRETSST
Nucleotide Sequence CTGACCAGGCAGGCCGACCACACCACGCTGTCCAGCAATACCTTGAGGCCCGGGAGTACCAGGAGCACCAGCAGGACCATCAGCACCAGGGGATCCTTTCTCGCCAGCAGGGCCAGGGGGACCAGGGGGACCAACTTCACCAGGACGTCCAGCAGGGCCAGTCTCACCACGGGGACCTTTGCCGCCTTCTTTGCCAGCAGGACCAGGAGGGCCAGGGGGTCCAGCATTTCCAGAGGGGCCAGGAGGACCGACTCGGCCAGCAGCACCAGGGAAACCAGTAGCACC
CircID chr17:50189168|50189732
ORF Type ORF2
Protein Length 35
Nucleotide Length 105
Protein Sequence MPPSLPAGPGGPGGPAFPEGPGGPTRPAAPGKPVA
Nucleotide Sequence TTGCCGCCTTCTTTGCCAGCAGGACCAGGAGGGCCAGGGGGTCCAGCATTTCCAGAGGGGCCAGGAGGACCGACTCGGCCAGCAGCACCAGGGAAACCAGTAGCA
CircID chr17:50189168|50189732
ORF Type ORF3
Protein Length 105
Nucleotide Length 315
Protein Sequence MVSLVLLAESVLLAPLEMLDPLALLVLLAKKAAKVPVVRLALLDVLVKLVPLVPLALLARKDPLVLMVLLVLLVLPGLKVLLDSVVWSACLVREEREASLVFLAP
Nucleotide Sequence CTGGTTTCCCTGGTGCTGCTGGCCGAGTCGGTCCTCCTGGCCCCTCTGGAAATGCTGGACCCCCTGGCCCTCCTGGTCCTGCTGGCAAAGAAGGCGGCAAAGGTCCCCGTGGTGAGACTGGCCCTGCTGGACGTCCTGGTGAAGTTGGTCCCCCTGGTCCCCCTGGCCCTGCTGGCGAGAAAGGATCCCCTGGTGCTGATGGTCCTGCTGGTGCTCCTGGTACTCCCGGGCCTCAAGGTATTGCTGGACAGCGTGGTGTGGTCGGCCTGCCTGGTCAGAGAGGAGAGAGAGGCTTCCCTGGTCTTCCTGGCCCCT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab