CircRNA Information

General Information
circRNA Basic Information
CircID chr17:50189377|50189732
Strand -
CircType Non-Repeat
Host Gene ENSG00000108821.13;
Algorism find_circ;CIRI2;DCC;
Sequence GGTGCTACTGGTTTCCCTGGTGCTGCTGGCCGAGTCGGTCCTCCTGGCCCCTCTGGAAATGCTGGACCCCCTGGCCCTCCTGGTCCTGCTGGCAAAGAAGGCGGCAAAGGTCCCCGTGGTGAGACTGGCCCTGCTGGACGTCCTGGTGAAGTTGGTCCCCCTGGTCCCCCTGGCCCTGCTGGCGAGAAAGGATCCCCTGGTGCTGATGGTCCTGCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:50189377|50189732 hsa-miR-107 0 0 1
chr17:50189377|50189732 hsa-miR-370-5p 0 0 1
chr17:50189377|50189732 hsa-miR-370-3p 0 0 1
chr17:50189377|50189732 hsa-miR-328-5p 0 0 1
chr17:50189377|50189732 hsa-miR-328-3p 0 0 1
chr17:50189377|50189732 hsa-miR-133b 0 1 1
chr17:50189377|50189732 hsa-miR-193b-5p 0 0 1
chr17:50189377|50189732 hsa-miR-193b-3p 0 0 1
chr17:50189377|50189732 hsa-miR-593-5p 0 0 1
chr17:50189377|50189732 hsa-miR-593-3p 0 0 1
chr17:50189377|50189732 hsa-miR-1264 0 0 1
chr17:50189377|50189732 hsa-miR-541-5p 0 0 1
chr17:50189377|50189732 hsa-miR-541-3p 0 0 1
chr17:50189377|50189732 hsa-miR-922 0 0 1
chr17:50189377|50189732 hsa-miR-1205 0 0 1
chr17:50189377|50189732 hsa-miR-1287-5p 0 0 1
chr17:50189377|50189732 hsa-miR-1287-3p 0 0 1
chr17:50189377|50189732 hsa-miR-1291 0 1 1
chr17:50189377|50189732 hsa-miR-1293 0 0 1
chr17:50189377|50189732 hsa-miR-1299 0 0 1
chr17:50189377|50189732 hsa-miR-1275 0 0 1
chr17:50189377|50189732 hsa-miR-1322 0 0 1
chr17:50189377|50189732 hsa-miR-29b-1-5p 0 1 1
chr17:50189377|50189732 hsa-miR-29b-2-5p 0 1 1
chr17:50189377|50189732 hsa-miR-1225-3p 0 0 1
chr17:50189377|50189732 hsa-miR-1224-5p 0 1 1
chr17:50189377|50189732 hsa-miR-767-5p 0 0 1
chr17:50189377|50189732 hsa-miR-1184 0 1 1
chr17:50189377|50189732 hsa-miR-1289 0 0 1
chr17:50189377|50189732 hsa-miR-654-5p 0 0 1
chr17:50189377|50189732 hsa-miR-331-3p 0 1 1
chr17:50189377|50189732 hsa-miR-875-3p 0 0 1
chr17:50189377|50189732 hsa-miR-342-5p 0 0 1
chr17:50189377|50189732 hsa-miR-502-3p 0 1 1
chr17:50189377|50189732 hsa-miR-501-3p 0 1 1
chr17:50189377|50189732 hsa-miR-193a-3p 0 0 1
chr17:50189377|50189732 hsa-miR-1274a 0 0 1
chr17:50189377|50189732 hsa-miR-103 0 0 1
chr17:50189377|50189732 hsa-miR-133a 0 0 1
chr17:50189377|50189732 hsa-miR-326 1 0 0
chr17:50189377|50189732 hsa-miR-611 1 0 0
chr17:50189377|50189732 hsa-miR-623 1 0 0
chr17:50189377|50189732 hsa-miR-638 1 0 0
chr17:50189377|50189732 hsa-miR-762 1 0 0
chr17:50189377|50189732 hsa-miR-760 1 0 0
chr17:50189377|50189732 hsa-miR-1294 0 1 0
chr17:50189377|50189732 hsa-miR-3185 1 1 0
chr17:50189377|50189732 hsa-miR-4294 0 1 0
chr17:50189377|50189732 hsa-miR-4308 0 1 0
chr17:50189377|50189732 hsa-miR-4313 1 1 0
chr17:50189377|50189732 hsa-miR-4254 0 1 0
chr17:50189377|50189732 hsa-miR-4290 0 1 0
chr17:50189377|50189732 hsa-miR-3615 1 0 0
chr17:50189377|50189732 hsa-miR-3907 1 0 0
chr17:50189377|50189732 hsa-miR-3943 0 1 0
chr17:50189377|50189732 hsa-miR-4439 0 1 0
chr17:50189377|50189732 hsa-miR-4447 0 1 0
chr17:50189377|50189732 hsa-miR-2392 1 1 0
chr17:50189377|50189732 hsa-miR-4507 1 0 0
chr17:50189377|50189732 hsa-miR-4513 1 0 0
chr17:50189377|50189732 hsa-miR-1587 1 0 0
chr17:50189377|50189732 hsa-miR-4656 1 1 0
chr17:50189377|50189732 hsa-miR-4686 1 1 0
chr17:50189377|50189732 hsa-miR-4734 1 0 0
chr17:50189377|50189732 hsa-miR-4741 0 1 0
chr17:50189377|50189732 hsa-miR-4751 0 1 0
chr17:50189377|50189732 hsa-miR-5572 1 0 0
chr17:50189377|50189732 hsa-miR-5680 0 1 0
chr17:50189377|50189732 hsa-miR-8075 1 1 0
chr17:50189377|50189732 hsa-miR-8089 1 0 0
chr17:50189377|50189732 hsa-miR-6749-3p 1 0 0
chr17:50189377|50189732 hsa-miR-92a-2-5p 0 1 0
chr17:50189377|50189732 hsa-miR-3194-3p 1 0 0
chr17:50189377|50189732 hsa-miR-6861-5p 1 0 0
chr17:50189377|50189732 hsa-miR-3692-5p 1 1 0
chr17:50189377|50189732 hsa-miR-7160-5p 1 0 0
chr17:50189377|50189732 hsa-miR-296-5p 1 0 0
chr17:50189377|50189732 hsa-miR-6875-3p 1 0 0
chr17:50189377|50189732 hsa-miR-6741-5p 1 1 0
chr17:50189377|50189732 hsa-miR-874-3p 1 0 0
chr17:50189377|50189732 hsa-miR-3663-5p 0 1 0
chr17:50189377|50189732 hsa-miR-423-3p 1 0 0
chr17:50189377|50189732 hsa-miR-3151-5p 0 1 0
chr17:50189377|50189732 hsa-miR-185-3p 1 1 0
chr17:50189377|50189732 hsa-miR-6829-5p 0 1 0
chr17:50189377|50189732 hsa-miR-6765-3p 1 0 0
chr17:50189377|50189732 hsa-miR-6786-5p 1 0 0
chr17:50189377|50189732 hsa-miR-939-3p 1 0 0
chr17:50189377|50189732 hsa-miR-6772-3p 1 0 0
chr17:50189377|50189732 hsa-miR-7109-5p 1 0 0
chr17:50189377|50189732 hsa-miR-1226-5p 1 0 0
chr17:50189377|50189732 hsa-miR-6757-3p 1 0 0
chr17:50189377|50189732 hsa-miR-7113-3p 0 1 0
chr17:50189377|50189732 hsa-miR-6823-5p 1 0 0
chr17:50189377|50189732 hsa-miR-485-5p 1 1 0
chr17:50189377|50189732 hsa-miR-4667-3p 0 1 0
chr17:50189377|50189732 hsa-miR-4640-3p 1 1 0
chr17:50189377|50189732 hsa-miR-6769a-3p 0 1 0
chr17:50189377|50189732 hsa-miR-5584-5p 0 1 0
chr17:50189377|50189732 hsa-miR-7152-3p 0 1 0
chr17:50189377|50189732 hsa-miR-1237-3p 1 0 0
chr17:50189377|50189732 hsa-miR-1250-5p 0 1 0
chr17:50189377|50189732 hsa-miR-5003-3p 1 0 0
chr17:50189377|50189732 hsa-miR-660-3p 1 1 0
chr17:50189377|50189732 hsa-miR-6887-3p 0 1 0
chr17:50189377|50189732 hsa-miR-2276-5p 0 1 0
chr17:50189377|50189732 hsa-miR-6752-3p 1 0 0
chr17:50189377|50189732 hsa-miR-671-3p 1 0 0
chr17:50189377|50189732 hsa-miR-6856-3p 0 1 0
chr17:50189377|50189732 hsa-miR-6886-3p 1 0 0
chr17:50189377|50189732 hsa-miR-5088-3p 1 0 0
chr17:50189377|50189732 hsa-miR-4749-3p 0 1 0
chr17:50189377|50189732 hsa-miR-6859-3p 0 1 0
chr17:50189377|50189732 hsa-miR-4649-3p 1 0 0
chr17:50189377|50189732 hsa-miR-518c-5p 0 1 0
chr17:50189377|50189732 hsa-miR-133a-3p 0 1 0
chr17:50189377|50189732 hsa-miR-5001-5p 1 0 0
chr17:50189377|50189732 hsa-miR-6752-5p 1 1 0
chr17:50189377|50189732 hsa-miR-6756-5p 1 1 0
chr17:50189377|50189732 hsa-miR-6803-5p 1 1 0
chr17:50189377|50189732 hsa-miR-7110-5p 0 1 0
chr17:50189377|50189732 hsa-miR-6751-5p 1 1 0
chr17:50189377|50189732 hsa-miR-6852-3p 1 0 0
chr17:50189377|50189732 hsa-miR-3620-5p 1 0 0
chr17:50189377|50189732 hsa-miR-4745-3p 1 0 0
chr17:50189377|50189732 hsa-miR-4745-5p 1 0 0
chr17:50189377|50189732 hsa-miR-6846-5p 1 1 0
chr17:50189377|50189732 hsa-miR-6848-5p 1 1 0
chr17:50189377|50189732 hsa-miR-939-5p 1 0 0
chr17:50189377|50189732 hsa-miR-4758-5p 1 0 0
chr17:50189377|50189732 hsa-miR-3940-5p 1 0 0
chr17:50189377|50189732 hsa-miR-6856-5p 1 1 0
chr17:50189377|50189732 hsa-miR-6799-3p 1 1 0
chr17:50189377|50189732 hsa-miR-324-3p 1 1 0
chr17:50189377|50189732 hsa-miR-4472 0 1 0
chr17:50189377|50189732 hsa-miR-6791-5p 1 0 0
chr17:50189377|50189732 hsa-miR-9851-5p 0 1 0
chr17:50189377|50189732 hsa-miR-6792-3p 1 0 0
chr17:50189377|50189732 hsa-miR-6862-3p 1 0 0
chr17:50189377|50189732 hsa-miR-6805-3p 1 0 0
chr17:50189377|50189732 hsa-miR-6810-3p 1 0 0
chr17:50189377|50189732 hsa-miR-6775-3p 1 0 0
chr17:50189377|50189732 hsa-miR-3085-3p 1 0 0
chr17:50189377|50189732 hsa-miR-6744-3p 0 1 0
chr17:50189377|50189732 hsa-miR-4691-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:50189377|50189732
ORF Type ORF1
Protein Length 52
Nucleotide Length 156
Protein Sequence MLDPLALLVLLAKKAAKVPVVRLALLDVLVKLVPLVPLALLARKDPLVLMVL
Nucleotide Sequence ATGCTGGACCCCCTGGCCCTCCTGGTCCTGCTGGCAAAGAAGGCGGCAAAGGTCCCCGTGGTGAGACTGGCCCTGCTGGACGTCCTGGTGAAGTTGGTCCCCCTGGTCCCCCTGGCCCTGCTGGCGAGAAAGGATCCCCTGGTGCTGATGGTCCTG
CircID chr17:50189377|50189732
ORF Type ORF1
Protein Length 64
Nucleotide Length 192
Protein Sequence MDEDRRGCQTPGGSGASLGPQSAPPSFWQPPPSTPNLEQWTLLQRLTEGPGGPTRPAAPGKPVA
Nucleotide Sequence CTGGATGAGGATAGGAGGGGCTGTCAGACTCCAGGGGGCTCTGGTGCATCATTGGGTCCTCAGTCAGCCCCACCATCCTTCTGGCAGCCCCCACCCAGCACCCCCAACCTAGAGCAGTGGACTCTGCTGCAGAGACTTACAGAGGGGCCAGGAGGACCGACTCGGCCAGCAGCACCAGGGAAACCAGTAGCA
CircID chr17:50189377|50189732
ORF Type ORF2
Protein Length 54
Nucleotide Length 165
Protein Sequence MPPSLPAGPGGPGGPAFPWMRIGGAVRLQGALVHHWVLSQPHHPSGSPHPAPPT
Nucleotide Sequence TTGCCGCCTTCTTTGCCAGCAGGACCAGGAGGGCCAGGGGGTCCAGCATTTCCCTGGATGAGGATAGGAGGGGCTGTCAGACTCCAGGGGGCTCTGGTGCATCATTGGGTCCTCAGTCAGCCCCACCATCCTTCTGGCAGCCCCCACCCAGCACCCCCAACCTAG
CircID chr17:50189377|50189732
ORF Type ORF3
Protein Length 58
Nucleotide Length 174
Protein Sequence MSDSRGLWCIIGSSVSPTILLAAPTQHPQPRAVDSAAETYRGARRTDSASSTRETSST
Nucleotide Sequence CTGTCAGACTCCAGGGGGCTCTGGTGCATCATTGGGTCCTCAGTCAGCCCCACCATCCTTCTGGCAGCCCCCACCCAGCACCCCCAACCTAGAGCAGTGGACTCTGCTGCAGAGACTTACAGAGGGGCCAGGAGGACCGACTCGGCCAGCAGCACCAGGGAAACCAGTAGCACC
CircID chr17:50189377|50189732
ORF Type ORF4
Protein Length 52
Nucleotide Length 156
Protein Sequence MLDPLALLVLLAKKAAKVPVVRLALLDVLVKLVPLVPLALLARKDPLVLMVL
Nucleotide Sequence ATGCTGGACCCCCTGGCCCTCCTGGTCCTGCTGGCAAAGAAGGCGGCAAAGGTCCCCGTGGTGAGACTGGCCCTGCTGGACGTCCTGGTGAAGTTGGTCCCCCTGGTCCCCCTGGCCCTGCTGGCGAGAAAGGATCCCCTGGTGCTGATGGTCCTG
CircID chr17:50189377|50189732
ORF Type ORF5
Protein Length 47
Nucleotide Length 144
Protein Sequence MVGLTEDPMMHQSPLESDSPSYPHPGKCWTPWPSWSCWQRRRQRSPW
Nucleotide Sequence ATGGTGGGGCTGACTGAGGACCCAATGATGCACCAGAGCCCCCTGGAGTCTGACAGCCCCTCCTATCCTCATCCAGGGAAATGCTGGACCCCCTGGCCCTCCTGGTCCTGCTGGCAAAGAAGGCGGCAAAGGTCCCCGTGGTGA
CircID chr17:50189377|50189732
ORF Type ORF6
Protein Length 63
Nucleotide Length 189
Protein Sequence MTAPPILIQGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPA
Nucleotide Sequence CTGACAGCCCCTCCTATCCTCATCCAGGGAAATGCTGGACCCCCTGGCCCTCCTGGTCCTGCTGGCAAAGAAGGCGGCAAAGGTCCCCGTGGTGAGACTGGCCCTGCTGGACGTCCTGGTGAAGTTGGTCCCCCTGGTCCCCCTGGCCCTGCTGGCGAGAAAGGATCCCCTGGTGCTGATGGTCCTGCT
CircID chr17:50189377|50189732
ORF Type ORF1
Protein Length 35
Nucleotide Length 105
Protein Sequence MPPSLPAGPGGPGGPAFPEGPGGPTRPAAPGKPVA
Nucleotide Sequence TTGCCGCCTTCTTTGCCAGCAGGACCAGGAGGGCCAGGGGGTCCAGCATTTCCAGAGGGGCCAGGAGGACCGACTCGGCCAGCAGCACCAGGGAAACCAGTAGCA
CircID chr17:50189377|50189732
ORF Type ORF2
Protein Length 69
Nucleotide Length 207
Protein Sequence MVSLVLLAESVLLAPLEMLDPLALLVLLAKKAAKVPVVRLALLDVLVKLVPLVPLALLARKDPLVLMVL
Nucleotide Sequence CTGGTTTCCCTGGTGCTGCTGGCCGAGTCGGTCCTCCTGGCCCCTCTGGAAATGCTGGACCCCCTGGCCCTCCTGGTCCTGCTGGCAAAGAAGGCGGCAAAGGTCCCCGTGGTGAGACTGGCCCTGCTGGACGTCCTGGTGAAGTTGGTCCCCCTGGTCCCCCTGGCCCTGCTGGCGAGAAAGGATCCCCTGGTGCTGATGGTCCTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr17:50189377|50189732 ELAVL1 0 1 0
chr17:50189377|50189732 TAF15 0 2 0
chr17:50189377|50189732 WTAP 0 1 0
chr17:50189377|50189732 SRSF1 0 1 0
chr17:50189377|50189732 RBFOX2 0 2 1
chr17:50189377|50189732 U2AF2 7 1 0
chr17:50189377|50189732 LIN28B 1 0 0
chr17:50189377|50189732 FUS 3 2 0
chr17:50189377|50189732 FXR1 1 3 0
chr17:50189377|50189732 FXR2 1 1 0
chr17:50189377|50189732 FMR1 0 5 0
chr17:50189377|50189732 HNRNPA2B1 1 2 0
chr17:50189377|50189732 SND1 7 3 1
chr17:50189377|50189732 IGF2BP1 1 0 0
chr17:50189377|50189732 NOP58 1 0 0
chr17:50189377|50189732 IGF2BP3 1 0 0
chr17:50189377|50189732 IGF2BP2 10 9 3
chr17:50189377|50189732 MOV10 0 1 0
chr17:50189377|50189732 AGO2 6 1 3
chr17:50189377|50189732 EIF4A3 11 14 4
chr17:50189377|50189732 FBL 4 0 1
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab