CircRNA Information

General Information
circRNA Basic Information
CircID chr17:50190551|50190905
Strand -
CircType exon
Host Gene ENSG00000108821.12;
Algorism CIRI2;
Sequence CACGAGCTCCAGTGGGACCAGCAGGGCCGCTGGGACCACTTTCACCCTGAGAGCAAGGGACAAGAGGCTCAGGGTCAGGGCCTCCCCTGAATACTCCTAGTAGATGACCCCAGGAGAGCCTCCCCTCCTTCTGGTCCCTCCAGGTTCCCAGGTTGACAGCTCAGTTTGGCAGGACCTGCTCTCCCAACGCAACCCCACGGAACCGTGCCCAGGCCTGCTGAGGAGGCTATGTGTTAGGGCAGAAGGTGGGGAGGCGGCCACCTCACCTTGTCACCAGGGGCACCAGCAGGGCCAGGAGGACCAATGGGGCCAGTCAGACCACGGACGCCATCTTTGCCAGGAGAGCCATCAGCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:50190551|50190905 hsa-miR-214-5p 0 0 1
chr17:50190551|50190905 hsa-miR-214-3p 0 0 1
chr17:50190551|50190905 hsa-miR-370-5p 0 0 1
chr17:50190551|50190905 hsa-miR-370-3p 0 0 1
chr17:50190551|50190905 hsa-miR-328-5p 0 0 1
chr17:50190551|50190905 hsa-miR-328-3p 0 0 1
chr17:50190551|50190905 hsa-miR-133b 0 1 1
chr17:50190551|50190905 hsa-miR-345-5p 0 0 1
chr17:50190551|50190905 hsa-miR-345-3p 0 0 1
chr17:50190551|50190905 hsa-miR-496 0 0 1
chr17:50190551|50190905 hsa-miR-193b-5p 0 0 1
chr17:50190551|50190905 hsa-miR-193b-3p 0 0 1
chr17:50190551|50190905 hsa-miR-504-5p 0 0 1
chr17:50190551|50190905 hsa-miR-504-3p 0 0 1
chr17:50190551|50190905 hsa-miR-505-5p 0 0 1
chr17:50190551|50190905 hsa-miR-505-3p 0 0 1
chr17:50190551|50190905 hsa-miR-558 0 0 1
chr17:50190551|50190905 hsa-miR-564 0 0 1
chr17:50190551|50190905 hsa-miR-612 0 1 1
chr17:50190551|50190905 hsa-miR-619-5p 0 0 1
chr17:50190551|50190905 hsa-miR-619-3p 0 0 1
chr17:50190551|50190905 hsa-miR-623 1 0 1
chr17:50190551|50190905 hsa-miR-624-5p 0 0 1
chr17:50190551|50190905 hsa-miR-624-3p 0 0 1
chr17:50190551|50190905 hsa-miR-661 0 0 1
chr17:50190551|50190905 hsa-miR-760 1 0 1
chr17:50190551|50190905 hsa-miR-922 0 0 1
chr17:50190551|50190905 hsa-miR-1237-5p 0 0 1
chr17:50190551|50190905 hsa-miR-1237-3p 0 0 1
chr17:50190551|50190905 hsa-miR-1291 0 1 1
chr17:50190551|50190905 hsa-miR-1294 0 0 1
chr17:50190551|50190905 hsa-miR-1266-5p 0 0 1
chr17:50190551|50190905 hsa-miR-1266-3p 0 0 1
chr17:50190551|50190905 hsa-miR-1281 0 1 1
chr17:50190551|50190905 hsa-miR-1292-5p 0 0 1
chr17:50190551|50190905 hsa-miR-1292-3p 0 0 1
chr17:50190551|50190905 hsa-miR-615-5p 0 0 1
chr17:50190551|50190905 hsa-miR-490-3p 0 1 1
chr17:50190551|50190905 hsa-miR-1224-3p 0 1 1
chr17:50190551|50190905 hsa-miR-331-3p 0 0 1
chr17:50190551|50190905 hsa-miR-324-3p 0 0 1
chr17:50190551|50190905 hsa-miR-125a-5p 0 1 1
chr17:50190551|50190905 hsa-miR-193a-3p 0 0 1
chr17:50190551|50190905 hsa-miR-125b 0 0 1
chr17:50190551|50190905 hsa-miR-138 0 0 1
chr17:50190551|50190905 hsa-miR-1285 0 0 1
chr17:50190551|50190905 hsa-miR-133a 0 0 1
chr17:50190551|50190905 hsa-miR-346 1 0 0
chr17:50190551|50190905 hsa-miR-608 0 1 0
chr17:50190551|50190905 hsa-miR-637 1 0 0
chr17:50190551|50190905 hsa-miR-762 1 0 0
chr17:50190551|50190905 hsa-miR-298 0 1 0
chr17:50190551|50190905 hsa-miR-1913 1 0 0
chr17:50190551|50190905 hsa-miR-2278 0 1 0
chr17:50190551|50190905 hsa-miR-4299 0 1 0
chr17:50190551|50190905 hsa-miR-4253 1 0 0
chr17:50190551|50190905 hsa-miR-4270 1 0 0
chr17:50190551|50190905 hsa-miR-3907 1 0 0
chr17:50190551|50190905 hsa-miR-3909 0 1 0
chr17:50190551|50190905 hsa-miR-4425 0 1 0
chr17:50190551|50190905 hsa-miR-4518 0 1 0
chr17:50190551|50190905 hsa-miR-4647 0 1 0
chr17:50190551|50190905 hsa-miR-4682 1 0 0
chr17:50190551|50190905 hsa-miR-4686 1 1 0
chr17:50190551|50190905 hsa-miR-4721 1 0 0
chr17:50190551|50190905 hsa-miR-4741 1 0 0
chr17:50190551|50190905 hsa-miR-5787 1 0 0
chr17:50190551|50190905 hsa-miR-6081 0 1 0
chr17:50190551|50190905 hsa-miR-6131 0 1 0
chr17:50190551|50190905 hsa-miR-6860 0 1 0
chr17:50190551|50190905 hsa-miR-7976 0 1 0
chr17:50190551|50190905 hsa-miR-8057 0 1 0
chr17:50190551|50190905 hsa-miR-8073 1 1 0
chr17:50190551|50190905 hsa-miR-8075 1 1 0
chr17:50190551|50190905 hsa-miR-8085 0 1 0
chr17:50190551|50190905 hsa-miR-8089 1 0 0
chr17:50190551|50190905 hsa-miR-9718 1 0 0
chr17:50190551|50190905 hsa-miR-9900 0 1 0
chr17:50190551|50190905 hsa-miR-9986 0 1 0
chr17:50190551|50190905 hsa-miR-6749-3p 1 0 0
chr17:50190551|50190905 hsa-miR-18a-3p 0 1 0
chr17:50190551|50190905 hsa-miR-3194-3p 0 1 0
chr17:50190551|50190905 hsa-miR-6825-5p 0 1 0
chr17:50190551|50190905 hsa-miR-6822-3p 1 0 0
chr17:50190551|50190905 hsa-miR-3692-5p 0 1 0
chr17:50190551|50190905 hsa-miR-7851-3p 0 1 0
chr17:50190551|50190905 hsa-miR-6515-5p 0 1 0
chr17:50190551|50190905 hsa-miR-1225-3p 1 0 0
chr17:50190551|50190905 hsa-miR-7847-3p 0 1 0
chr17:50190551|50190905 hsa-miR-8069 1 0 0
chr17:50190551|50190905 hsa-miR-3189-5p 1 1 0
chr17:50190551|50190905 hsa-miR-6796-5p 1 0 0
chr17:50190551|50190905 hsa-miR-4725-5p 1 1 0
chr17:50190551|50190905 hsa-miR-2467-5p 0 1 0
chr17:50190551|50190905 hsa-miR-6782-5p 1 0 0
chr17:50190551|50190905 hsa-miR-6810-5p 1 0 0
chr17:50190551|50190905 hsa-miR-6882-3p 1 1 0
chr17:50190551|50190905 hsa-miR-1343-3p 0 1 0
chr17:50190551|50190905 hsa-miR-6852-5p 0 1 0
chr17:50190551|50190905 hsa-miR-939-3p 1 1 0
chr17:50190551|50190905 hsa-miR-204-3p 0 1 0
chr17:50190551|50190905 hsa-miR-1229-5p 1 0 0
chr17:50190551|50190905 hsa-miR-6749-5p 1 0 0
chr17:50190551|50190905 hsa-miR-6878-3p 0 1 0
chr17:50190551|50190905 hsa-miR-6818-3p 0 1 0
chr17:50190551|50190905 hsa-miR-6824-5p 1 0 0
chr17:50190551|50190905 hsa-miR-7152-3p 0 1 0
chr17:50190551|50190905 hsa-miR-1225-5p 1 1 0
chr17:50190551|50190905 hsa-miR-4732-3p 0 1 0
chr17:50190551|50190905 hsa-miR-597-3p 1 0 0
chr17:50190551|50190905 hsa-miR-6778-3p 0 1 0
chr17:50190551|50190905 hsa-miR-3074-5p 0 1 0
chr17:50190551|50190905 hsa-miR-653-3p 0 1 0
chr17:50190551|50190905 hsa-miR-6738-3p 0 1 0
chr17:50190551|50190905 hsa-miR-502-5p 0 1 0
chr17:50190551|50190905 hsa-miR-3173-5p 0 1 0
chr17:50190551|50190905 hsa-miR-6789-3p 1 0 0
chr17:50190551|50190905 hsa-miR-3157-3p 0 1 0
chr17:50190551|50190905 hsa-miR-4727-5p 1 0 0
chr17:50190551|50190905 hsa-miR-506-5p 0 1 0
chr17:50190551|50190905 hsa-miR-18b-3p 0 1 0
chr17:50190551|50190905 hsa-miR-133a-3p 0 1 0
chr17:50190551|50190905 hsa-miR-6812-5p 1 0 0
chr17:50190551|50190905 hsa-miR-6737-5p 1 0 0
chr17:50190551|50190905 hsa-miR-6815-5p 0 1 0
chr17:50190551|50190905 hsa-miR-6819-5p 1 0 0
chr17:50190551|50190905 hsa-miR-1249-5p 0 1 0
chr17:50190551|50190905 hsa-miR-6774-5p 1 0 0
chr17:50190551|50190905 hsa-miR-6797-5p 0 1 0
chr17:50190551|50190905 hsa-miR-6875-5p 0 1 0
chr17:50190551|50190905 hsa-miR-4685-3p 1 0 0
chr17:50190551|50190905 hsa-miR-6795-5p 1 1 0
chr17:50190551|50190905 hsa-miR-6887-5p 1 1 0
chr17:50190551|50190905 hsa-miR-939-5p 1 0 0
chr17:50190551|50190905 hsa-miR-30c-1-3p 0 1 0
chr17:50190551|50190905 hsa-miR-6731-5p 1 1 0
chr17:50190551|50190905 hsa-miR-6799-3p 1 1 0
chr17:50190551|50190905 hsa-miR-6855-5p 1 1 0
chr17:50190551|50190905 hsa-miR-6791-3p 1 0 0
chr17:50190551|50190905 hsa-miR-6877-3p 0 1 0
chr17:50190551|50190905 hsa-miR-4646-5p 1 1 0
chr17:50190551|50190905 hsa-miR-6891-5p 0 1 0
chr17:50190551|50190905 hsa-miR-7107-3p 1 0 0
chr17:50190551|50190905 hsa-miR-6893-3p 0 1 0
chr17:50190551|50190905 hsa-miR-6805-3p 1 0 0
chr17:50190551|50190905 hsa-miR-6810-3p 1 0 0
chr17:50190551|50190905 hsa-miR-6829-3p 1 1 0
chr17:50190551|50190905 hsa-miR-6718-5p 0 1 0
chr17:50190551|50190905 hsa-miR-6775-3p 1 1 0
chr17:50190551|50190905 hsa-miR-6751-3p 0 1 0
chr17:50190551|50190905 hsa-miR-6819-3p 0 1 0
chr17:50190551|50190905 hsa-miR-6823-3p 0 1 0
chr17:50190551|50190905 hsa-miR-4756-5p 0 1 0
chr17:50190551|50190905 hsa-miR-6783-3p 0 1 0
chr17:50190551|50190905 hsa-miR-10394-5p 1 0 0
chr17:50190551|50190905 hsa-miR-3619-5p 1 1 0
chr17:50190551|50190905 hsa-miR-6781-3p 0 1 0
chr17:50190551|50190905 hsa-miR-6811-5p 0 1 0
chr17:50190551|50190905 hsa-miR-125b-5p 0 1 0
chr17:50190551|50190905 hsa-miR-203b-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:50190551|50190905
ORF Type ORF1
Protein Length 29
Nucleotide Length 87
Protein Sequence MSPGAPAGPGGPMGPVRPRTPSLPGEPSA
Nucleotide Sequence TTGTCACCAGGGGCACCAGCAGGGCCAGGAGGACCAATGGGGCCAGTCAGACCACGGACGCCATCTTTGCCAGGAGAGCCATCAGCA
CircID chr17:50190551|50190905
ORF Type ORF2
Protein Length 84
Nucleotide Length 252
Protein Sequence MTPGEPPLLLVPPGSQVDSSVWQDLLSQRNPTEPCPGLLRRLCVRAEGGEAATSPCHQGHQQGQEDQWGQSDHGRHLCQESHQH
Nucleotide Sequence ATGACCCCAGGAGAGCCTCCCCTCCTTCTGGTCCCTCCAGGTTCCCAGGTTGACAGCTCAGTTTGGCAGGACCTGCTCTCCCAACGCAACCCCACGGAACCGTGCCCAGGCCTGCTGAGGAGGCTATGTGTTAGGGCAGAAGGTGGGGAGGCGGCCACCTCACCTTGTCACCAGGGGCACCAGCAGGGCCAGGAGGACCAATGGGGCCAGTCAGACCACGGACGCCATCTTTGCCAGGAGAGCCATCAGCAC
CircID chr17:50190551|50190905
ORF Type ORF3
Protein Length 50
Nucleotide Length 150
Protein Sequence MGTWRDQKEGRLSWGHLLGVFRGGPDPEPLVPCSQGESGPSGPAGPTGAR
Nucleotide Sequence CTGGGAACCTGGAGGGACCAGAAGGAGGGGAGGCTCTCCTGGGGTCATCTACTAGGAGTATTCAGGGGAGGCCCTGACCCTGAGCCTCTTGTCCCTTGCTCTCAGGGTGAAAGTGGTCCCAGCGGCCCTGCTGGTCCCACTGGAGCTCGT
CircID chr17:50190551|50190905
ORF Type ORF4
Protein Length 31
Nucleotide Length 96
Protein Sequence MRWESRSCQTELSTWEPGGTRRRGGSPGVIY
Nucleotide Sequence TTGCGTTGGGAGAGCAGGTCCTGCCAAACTGAGCTGTCAACCTGGGAACCTGGAGGGACCAGAAGGAGGGGAGGCTCTCCTGGGGTCATCTACTAG
CircID chr17:50190551|50190905
ORF Type ORF5
Protein Length 26
Nucleotide Length 78
Protein Sequence MTLSLLSLALRVKVVPAALLVPLELV
Nucleotide Sequence CTGACCCTGAGCCTCTTGTCCCTTGCTCTCAGGGTGAAAGTGGTCCCAGCGGCCCTGCTGGTCCCACTGGAGCTCGTG
CircID chr17:50190551|50190905
ORF Type ORF6
Protein Length 27
Nucleotide Length 84
Protein Sequence MTGPIGPPGPAGAPGDKVRWPPPHLLP
Nucleotide Sequence CTGACTGGCCCCATTGGTCCTCCTGGCCCTGCTGGTGCCCCTGGTGACAAGGTGAGGTGGCCGCCTCCCCACCTTCTGCCCTAA
CircID chr17:50190551|50190905
ORF Type ORF7
Protein Length 45
Nucleotide Length 138
Protein Sequence MGTVPWGCVGRAGPAKLSCQPGNLEGPEGGEALLGSSTRSIQGRP
Nucleotide Sequence CTGGGCACGGTTCCGTGGGGTTGCGTTGGGAGAGCAGGTCCTGCCAAACTGAGCTGTCAACCTGGGAACCTGGAGGGACCAGAAGGAGGGGAGGCTCTCCTGGGGTCATCTACTAGGAGTATTCAGGGGAGGCCCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab