CircRNA Information

General Information
circRNA Basic Information
CircID chr17:50192510|50192826
Strand -
CircType exon
Host Gene ENSG00000108821.12;
Algorism CIRI2;
Sequence CAGCAGGACCAGGGAGACCCTGTAGGTGGGAAATGGGGGAAGAAGGGAGGGAAGGTTTAGAATCTGGAAGAGACCAAAGAGGTGTTTCCTACCCCTACCTCCCAGCATCCTGACAGCCATGAGGCCTCACCTGGAATCCGGGGGAGCCAGCAGGGCCTTGTTCACCTCTCTCGCCAGCGGGACCAGCAGGGCCAGGGGGTCCCTGAGCTCCAGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:50192510|50192826 hsa-let-7b-5p 0 0 1
chr17:50192510|50192826 hsa-let-7b-3p 0 0 1
chr17:50192510|50192826 hsa-let-7c-5p 0 0 1
chr17:50192510|50192826 hsa-let-7c-3p 0 0 1
chr17:50192510|50192826 hsa-let-7d-5p 0 0 1
chr17:50192510|50192826 hsa-let-7d-3p 0 0 1
chr17:50192510|50192826 hsa-let-7e-5p 0 0 1
chr17:50192510|50192826 hsa-let-7e-3p 0 0 1
chr17:50192510|50192826 hsa-miR-98-5p 0 0 1
chr17:50192510|50192826 hsa-miR-98-3p 0 0 1
chr17:50192510|50192826 hsa-let-7g-5p 0 0 1
chr17:50192510|50192826 hsa-let-7g-3p 0 0 1
chr17:50192510|50192826 hsa-let-7i-5p 0 0 1
chr17:50192510|50192826 hsa-let-7i-3p 0 0 1
chr17:50192510|50192826 hsa-miR-149-5p 0 0 1
chr17:50192510|50192826 hsa-miR-149-3p 0 0 1
chr17:50192510|50192826 hsa-miR-370-5p 0 0 1
chr17:50192510|50192826 hsa-miR-370-3p 0 0 1
chr17:50192510|50192826 hsa-miR-328-5p 0 0 1
chr17:50192510|50192826 hsa-miR-328-3p 0 0 1
chr17:50192510|50192826 hsa-miR-133b 0 0 1
chr17:50192510|50192826 hsa-miR-1182 0 0 1
chr17:50192510|50192826 hsa-miR-1236-5p 0 0 1
chr17:50192510|50192826 hsa-miR-1236-3p 0 0 1
chr17:50192510|50192826 hsa-miR-1291 0 1 1
chr17:50192510|50192826 hsa-miR-1248 0 0 1
chr17:50192510|50192826 hsa-miR-1266-5p 0 0 1
chr17:50192510|50192826 hsa-miR-1266-3p 0 0 1
chr17:50192510|50192826 hsa-miR-125a-3p 1 1 1
chr17:50192510|50192826 hsa-miR-525-5p 0 0 1
chr17:50192510|50192826 hsa-miR-361-3p 0 0 1
chr17:50192510|50192826 hsa-miR-1224-3p 0 0 1
chr17:50192510|50192826 hsa-miR-331-3p 0 1 1
chr17:50192510|50192826 hsa-miR-188-3p 1 1 1
chr17:50192510|50192826 hsa-miR-520a-5p 0 0 1
chr17:50192510|50192826 hsa-miR-1260 0 0 1
chr17:50192510|50192826 hsa-miR-1280 0 0 1
chr17:50192510|50192826 hsa-miR-642 0 0 1
chr17:50192510|50192826 hsa-miR-9 0 0 1
chr17:50192510|50192826 hsa-miR-138 0 0 1
chr17:50192510|50192826 hsa-let-7a 0 0 1
chr17:50192510|50192826 hsa-let-7f 0 0 1
chr17:50192510|50192826 hsa-miR-133a 0 0 1
chr17:50192510|50192826 hsa-miR-1205 0 1 0
chr17:50192510|50192826 hsa-miR-4281 1 1 0
chr17:50192510|50192826 hsa-miR-4290 0 1 0
chr17:50192510|50192826 hsa-miR-4449 1 0 0
chr17:50192510|50192826 hsa-miR-4458 0 1 0
chr17:50192510|50192826 hsa-miR-3689c 0 1 0
chr17:50192510|50192826 hsa-miR-4518 0 1 0
chr17:50192510|50192826 hsa-miR-4710 0 1 0
chr17:50192510|50192826 hsa-miR-4739 1 0 0
chr17:50192510|50192826 hsa-miR-4741 1 0 0
chr17:50192510|50192826 hsa-miR-6069 1 0 0
chr17:50192510|50192826 hsa-miR-6131 0 1 0
chr17:50192510|50192826 hsa-miR-8065 0 1 0
chr17:50192510|50192826 hsa-miR-138-5p 1 0 0
chr17:50192510|50192826 hsa-miR-3194-3p 1 1 0
chr17:50192510|50192826 hsa-miR-6881-3p 0 1 0
chr17:50192510|50192826 hsa-miR-6799-5p 1 1 0
chr17:50192510|50192826 hsa-miR-3692-5p 0 1 0
chr17:50192510|50192826 hsa-miR-6089 1 0 0
chr17:50192510|50192826 hsa-miR-3192-5p 0 1 0
chr17:50192510|50192826 hsa-miR-6832-3p 0 1 0
chr17:50192510|50192826 hsa-miR-6845-3p 1 0 0
chr17:50192510|50192826 hsa-miR-6871-5p 0 1 0
chr17:50192510|50192826 hsa-miR-30b-3p 0 1 0
chr17:50192510|50192826 hsa-miR-4713-5p 1 0 0
chr17:50192510|50192826 hsa-miR-6786-5p 1 0 0
chr17:50192510|50192826 hsa-miR-3667-3p 1 0 0
chr17:50192510|50192826 hsa-miR-889-5p 0 1 0
chr17:50192510|50192826 hsa-miR-4667-3p 0 1 0
chr17:50192510|50192826 hsa-miR-4640-3p 0 1 0
chr17:50192510|50192826 hsa-miR-7152-3p 0 1 0
chr17:50192510|50192826 hsa-miR-6867-3p 0 1 0
chr17:50192510|50192826 hsa-miR-5088-3p 0 1 0
chr17:50192510|50192826 hsa-miR-6859-3p 0 1 0
chr17:50192510|50192826 hsa-miR-3670 0 1 0
chr17:50192510|50192826 hsa-miR-3173-5p 0 1 0
chr17:50192510|50192826 hsa-miR-6734-3p 1 1 0
chr17:50192510|50192826 hsa-miR-1273h-5p 0 1 0
chr17:50192510|50192826 hsa-miR-3689b-3p 0 1 0
chr17:50192510|50192826 hsa-miR-6851-5p 0 1 0
chr17:50192510|50192826 hsa-miR-1249-5p 1 0 0
chr17:50192510|50192826 hsa-miR-4685-3p 0 1 0
chr17:50192510|50192826 hsa-miR-3689a-3p 0 1 0
chr17:50192510|50192826 hsa-miR-6758-5p 0 1 0
chr17:50192510|50192826 hsa-miR-6856-5p 0 1 0
chr17:50192510|50192826 hsa-miR-6799-3p 0 1 0
chr17:50192510|50192826 hsa-miR-6791-3p 1 0 0
chr17:50192510|50192826 hsa-miR-6766-5p 0 1 0
chr17:50192510|50192826 hsa-miR-6724-5p 1 0 0
chr17:50192510|50192826 hsa-miR-7107-3p 1 0 0
chr17:50192510|50192826 hsa-miR-6893-3p 0 1 0
chr17:50192510|50192826 hsa-miR-193b-3p 1 0 0
chr17:50192510|50192826 hsa-miR-6862-3p 1 0 0
chr17:50192510|50192826 hsa-miR-6775-3p 0 1 0
chr17:50192510|50192826 hsa-miR-10394-5p 1 0 0
chr17:50192510|50192826 hsa-miR-6848-3p 1 1 0
chr17:50192510|50192826 hsa-miR-6833-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:50192510|50192826
ORF Type ORF1
Protein Length 50
Nucleotide Length 150
Protein Sequence MEETKEVFPTPTSQHPDSHEASPGIRGSQQGLVHLSRQRDQQGQGVPELQ
Nucleotide Sequence CTGGAAGAGACCAAAGAGGTGTTTCCTACCCCTACCTCCCAGCATCCTGACAGCCATGAGGCCTCACCTGGAATCCGGGGGAGCCAGCAGGGCCTTGTTCACCTCTCTCGCCAGCGGGACCAGCAGGGCCAGGGGGTCCCTGAGCTCCAG
CircID chr17:50192510|50192826
ORF Type ORF2
Protein Length 35
Nucleotide Length 105
Protein Sequence MTAMRPHLESGGASRALFTSLASGTSRARGSLSSS
Nucleotide Sequence CTGACAGCCATGAGGCCTCACCTGGAATCCGGGGGAGCCAGCAGGGCCTTGTTCACCTCTCTCGCCAGCGGGACCAGCAGGGCCAGGGGGTCCCTGAGCTCCAGC
CircID chr17:50192510|50192826
ORF Type ORF3
Protein Length 26
Nucleotide Length 81
Protein Sequence MGEEGREGLESGRDQRGVSYPYLPAS
Nucleotide Sequence ATGGGGGAAGAAGGGAGGGAAGGTTTAGAATCTGGAAGAGACCAAAGAGGTGTTTCCTACCCCTACCTCCCAGCATCCTGA
CircID chr17:50192510|50192826
ORF Type ORF4
Protein Length 28
Nucleotide Length 87
Protein Sequence LELRDPLALLVPLAREVNKALLAPPDSR
Nucleotide Sequence CTGGAGCTCAGGGACCCCCTGGCCCTGCTGGTCCCGCTGGCGAGAGAGGTGAACAAGGCCCTGCTGGCTCCCCCGGATTCCAGGTGA
CircID chr17:50192510|50192826
ORF Type ORF5
Protein Length 40
Nucleotide Length 120
Protein Sequence MAVRMLGGRGRKHLFGLFQILNLPSLLPPFPTYRVSLVLL
Nucleotide Sequence ATGGCTGTCAGGATGCTGGGAGGTAGGGGTAGGAAACACCTCTTTGGTCTCTTCCAGATTCTAAACCTTCCCTCCCTTCTTCCCCCATTTCCCACCTACAGGGTCTCCCTGGTCCTGCTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab