CircRNA Information

General Information
circRNA Basic Information
CircID chr17:50192640|50192814
Strand -
CircType exon
Host Gene ENSG00000108821.12;
Algorism CIRI2;
Sequence CTGGAATCCGGGGGAGCCAGCAGGGCCTTGTTCACCTCTCTCGCCAGCGGGACCAGCAGGGCCAGGGGGTCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:50192640|50192814 hsa-miR-134-5p 0 0 1
chr17:50192640|50192814 hsa-miR-134-3p 0 0 1
chr17:50192640|50192814 hsa-miR-149-5p 0 0 1
chr17:50192640|50192814 hsa-miR-149-3p 0 0 1
chr17:50192640|50192814 hsa-miR-370-5p 0 0 1
chr17:50192640|50192814 hsa-miR-370-3p 0 0 1
chr17:50192640|50192814 hsa-miR-328-5p 0 0 1
chr17:50192640|50192814 hsa-miR-328-3p 0 0 1
chr17:50192640|50192814 hsa-miR-637 0 0 1
chr17:50192640|50192814 hsa-miR-939-5p 0 0 1
chr17:50192640|50192814 hsa-miR-939-3p 0 0 1
chr17:50192640|50192814 hsa-miR-943 0 0 1
chr17:50192640|50192814 hsa-miR-1183 1 0 1
chr17:50192640|50192814 hsa-miR-1234-3p 0 0 1
chr17:50192640|50192814 hsa-miR-1291 0 1 1
chr17:50192640|50192814 hsa-miR-1234 0 0 1
chr17:50192640|50192814 hsa-miR-574-5p 0 0 1
chr17:50192640|50192814 hsa-miR-331-3p 1 1 1
chr17:50192640|50192814 hsa-miR-125a-5p 0 0 1
chr17:50192640|50192814 hsa-miR-142-3p 0 1 1
chr17:50192640|50192814 hsa-miR-125b 0 0 1
chr17:50192640|50192814 hsa-miR-138 0 0 1
chr17:50192640|50192814 hsa-miR-608 1 0 0
chr17:50192640|50192814 hsa-miR-298 1 1 0
chr17:50192640|50192814 hsa-miR-760 1 0 0
chr17:50192640|50192814 hsa-miR-1182 0 1 0
chr17:50192640|50192814 hsa-miR-2117 0 1 0
chr17:50192640|50192814 hsa-miR-3175 0 1 0
chr17:50192640|50192814 hsa-miR-4313 1 0 0
chr17:50192640|50192814 hsa-miR-4281 0 1 0
chr17:50192640|50192814 hsa-miR-4449 1 0 0
chr17:50192640|50192814 hsa-miR-4468 0 1 0
chr17:50192640|50192814 hsa-miR-4658 0 1 0
chr17:50192640|50192814 hsa-miR-6069 1 0 0
chr17:50192640|50192814 hsa-miR-6860 1 0 0
chr17:50192640|50192814 hsa-miR-7974 0 1 0
chr17:50192640|50192814 hsa-miR-8089 0 1 0
chr17:50192640|50192814 hsa-miR-12116 1 0 0
chr17:50192640|50192814 hsa-miR-138-5p 1 0 0
chr17:50192640|50192814 hsa-miR-3194-3p 1 0 0
chr17:50192640|50192814 hsa-miR-6836-3p 1 0 0
chr17:50192640|50192814 hsa-miR-3150a-3p 0 1 0
chr17:50192640|50192814 hsa-miR-6825-5p 1 0 0
chr17:50192640|50192814 hsa-miR-6799-5p 0 1 0
chr17:50192640|50192814 hsa-miR-3692-5p 0 1 0
chr17:50192640|50192814 hsa-miR-6840-5p 1 0 0
chr17:50192640|50192814 hsa-miR-874-3p 1 0 0
chr17:50192640|50192814 hsa-miR-6873-3p 0 1 0
chr17:50192640|50192814 hsa-miR-4655-3p 0 1 0
chr17:50192640|50192814 hsa-miR-3156-5p 1 0 0
chr17:50192640|50192814 hsa-miR-6728-3p 0 1 0
chr17:50192640|50192814 hsa-miR-7109-5p 1 0 0
chr17:50192640|50192814 hsa-miR-4640-3p 1 1 0
chr17:50192640|50192814 hsa-miR-6769a-3p 0 1 0
chr17:50192640|50192814 hsa-miR-6778-3p 0 1 0
chr17:50192640|50192814 hsa-miR-6865-3p 0 1 0
chr17:50192640|50192814 hsa-miR-6886-3p 0 1 0
chr17:50192640|50192814 hsa-miR-6795-3p 1 1 0
chr17:50192640|50192814 hsa-miR-6859-3p 1 1 0
chr17:50192640|50192814 hsa-miR-3173-5p 0 1 0
chr17:50192640|50192814 hsa-miR-6780b-3p 1 1 0
chr17:50192640|50192814 hsa-miR-6812-5p 1 1 0
chr17:50192640|50192814 hsa-miR-6870-5p 1 0 0
chr17:50192640|50192814 hsa-miR-1343-5p 1 0 0
chr17:50192640|50192814 hsa-miR-6763-5p 1 1 0
chr17:50192640|50192814 hsa-miR-6889-5p 0 1 0
chr17:50192640|50192814 hsa-miR-6758-5p 0 1 0
chr17:50192640|50192814 hsa-miR-6856-5p 0 1 0
chr17:50192640|50192814 hsa-miR-6799-3p 1 1 0
chr17:50192640|50192814 hsa-miR-6791-3p 1 0 0
chr17:50192640|50192814 hsa-miR-4700-5p 0 1 0
chr17:50192640|50192814 hsa-miR-4667-5p 1 1 0
chr17:50192640|50192814 hsa-miR-6790-5p 1 1 0
chr17:50192640|50192814 hsa-miR-6724-5p 1 0 0
chr17:50192640|50192814 hsa-miR-6893-3p 1 1 0
chr17:50192640|50192814 hsa-miR-4757-5p 1 0 0
chr17:50192640|50192814 hsa-miR-6529-5p 0 1 0
chr17:50192640|50192814 hsa-miR-6805-3p 1 0 0
chr17:50192640|50192814 hsa-miR-6775-3p 1 1 0
chr17:50192640|50192814 hsa-miR-10392-3p 1 0 0
chr17:50192640|50192814 hsa-miR-6744-3p 1 0 0
chr17:50192640|50192814 hsa-miR-6783-3p 1 0 0
chr17:50192640|50192814 hsa-miR-4768-5p 0 1 0
chr17:50192640|50192814 hsa-miR-6848-3p 1 0 0
chr17:50192640|50192814 hsa-miR-6827-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr17:50192640|50192814
ORF Type ORF1
Protein Length 58
Nucleotide Length 174
Protein Sequence LESGGASRALFTSLASGTLHRENTTVTGRPRRRGAEGVSPFLLPRSPHQGHSQQGQGV
Nucleotide Sequence CTGGAATCCGGGGGAGCCAGCAGGGCCTTGTTCACCTCTCTCGCCAGCGGGACCCTGCACAGAGAGAACACTACAGTCACGGGGAGGCCGAGGAGACGAGGGGCTGAGGGTGTCTCCCCTTTTCTGCTCCCCAGATCTCCCCATCAGGGACACTCACAGCAGGGCCAGGGGGTC
CircID chr17:50192640|50192814
ORF Type ORF2
Protein Length 49
Nucleotide Length 147
Protein Sequence MMGRSGEQKRGDTLSPSSPRPPRDCSVLSVQGPAGERGEQGPAGSPGFQ
Nucleotide Sequence CTGATGGGGAGATCTGGGGAGCAGAAAAGGGGAGACACCCTCAGCCCCTCGTCTCCTCGGCCTCCCCGTGACTGTAGTGTTCTCTCTGTGCAGGGTCCCGCTGGCGAGAGAGGTGAACAAGGCCCTGCTGGCTCCCCCGGATTCCAG
CircID chr17:50192640|50192814
ORF Type ORF3
Protein Length 44
Nucleotide Length 132
Protein Sequence MGSRKGETPSAPRLLGLPVTVVFSLCRVPLAREVNKALLAPPDS
Nucleotide Sequence CTGGGGAGCAGAAAAGGGGAGACACCCTCAGCCCCTCGTCTCCTCGGCCTCCCCGTGACTGTAGTGTTCTCTCTGTGCAGGGTCCCGCTGGCGAGAGAGGTGAACAAGGCCCTGCTGGCTCCCCCGGATTCC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab