CircRNA Information

General Information
circRNA Basic Information
CircID chr17:50194393|50194782
Strand -
CircType exon
Host Gene ENSG00000108821.12;
Algorism CIRI2;
Sequence CAGGAGATCCTTTGGGGCCAGCAGGGCCAGGAGAACCACGTTCACCAGCGGGACCCTGGTTGGGGGAAGTCACAGGAACAGTTAGGGTCTCAAGTTTGTGGCTCTTTGCCACGGGCCAAAAGAGGAAGAAGATGCCCAGGGAGCGGCAGGGTCAGCCCCCCGGCCGCAAGGAGAGGTTACCTTGGGACCAGCAACACCATCTGCGCCAGGGAAACCACGGCTACCAGGTCCACCCTGCAGGAGGAGAGGAGGCCAGTGAACTCCGCGACACACAGGCACCAGCCAGGCAATGAGGGTGGAGCGGGAGGGGGCGGGCAGGGACACTTACACGCTCGCCAGGGGGTCCGGGCAGGCCAGTGGGTCCGGGTTCACCTCGAGCTCCTCGCTTTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:50194393|50194782 hsa-miR-134-5p 0 0 1
chr17:50194393|50194782 hsa-miR-134-3p 0 0 1
chr17:50194393|50194782 hsa-miR-370-5p 0 0 1
chr17:50194393|50194782 hsa-miR-370-3p 0 0 1
chr17:50194393|50194782 hsa-miR-328-5p 0 0 1
chr17:50194393|50194782 hsa-miR-328-3p 0 0 1
chr17:50194393|50194782 hsa-miR-492 0 0 1
chr17:50194393|50194782 hsa-miR-193b-5p 0 0 1
chr17:50194393|50194782 hsa-miR-193b-3p 0 0 1
chr17:50194393|50194782 hsa-miR-504-5p 0 0 1
chr17:50194393|50194782 hsa-miR-504-3p 0 0 1
chr17:50194393|50194782 hsa-miR-595 0 0 1
chr17:50194393|50194782 hsa-miR-612 1 0 1
chr17:50194393|50194782 hsa-miR-617 0 0 1
chr17:50194393|50194782 hsa-miR-631 0 0 1
chr17:50194393|50194782 hsa-miR-661 1 0 1
chr17:50194393|50194782 hsa-miR-708-5p 0 0 1
chr17:50194393|50194782 hsa-miR-708-3p 0 0 1
chr17:50194393|50194782 hsa-miR-1205 0 0 1
chr17:50194393|50194782 hsa-miR-1291 0 0 1
chr17:50194393|50194782 hsa-miR-1276 0 0 1
chr17:50194393|50194782 hsa-miR-769-5p 1 0 1
chr17:50194393|50194782 hsa-miR-361-3p 0 0 1
chr17:50194393|50194782 hsa-miR-28-5p 0 0 1
chr17:50194393|50194782 hsa-miR-502-5p 0 0 1
chr17:50194393|50194782 hsa-miR-331-3p 1 0 1
chr17:50194393|50194782 hsa-miR-193a-3p 0 0 1
chr17:50194393|50194782 hsa-miR-151-5p 0 0 1
chr17:50194393|50194782 hsa-miR-1274a 0 0 1
chr17:50194393|50194782 hsa-miR-550 0 0 1
chr17:50194393|50194782 hsa-miR-138 0 0 1
chr17:50194393|50194782 hsa-miR-1285 0 0 1
chr17:50194393|50194782 hsa-miR-1254 0 0 1
chr17:50194393|50194782 hsa-miR-326 1 0 0
chr17:50194393|50194782 hsa-miR-346 1 0 0
chr17:50194393|50194782 hsa-miR-596 1 0 0
chr17:50194393|50194782 hsa-miR-636 1 0 0
chr17:50194393|50194782 hsa-miR-637 1 0 0
chr17:50194393|50194782 hsa-miR-892b 1 0 0
chr17:50194393|50194782 hsa-miR-1303 1 0 0
chr17:50194393|50194782 hsa-miR-1538 1 0 0
chr17:50194393|50194782 hsa-miR-1913 1 0 0
chr17:50194393|50194782 hsa-miR-4308 1 0 0
chr17:50194393|50194782 hsa-miR-4281 1 0 0
chr17:50194393|50194782 hsa-miR-4292 1 0 0
chr17:50194393|50194782 hsa-miR-4329 1 0 0
chr17:50194393|50194782 hsa-miR-3615 1 0 0
chr17:50194393|50194782 hsa-miR-3907 1 0 0
chr17:50194393|50194782 hsa-miR-4440 1 0 0
chr17:50194393|50194782 hsa-miR-4683 1 0 0
chr17:50194393|50194782 hsa-miR-4767 1 0 0
chr17:50194393|50194782 hsa-miR-6069 1 0 0
chr17:50194393|50194782 hsa-miR-6860 1 0 0
chr17:50194393|50194782 hsa-miR-210-5p 1 0 0
chr17:50194393|50194782 hsa-miR-3692-5p 1 0 0
chr17:50194393|50194782 hsa-miR-6089 1 0 0
chr17:50194393|50194782 hsa-miR-1225-3p 1 0 0
chr17:50194393|50194782 hsa-miR-6727-5p 1 0 0
chr17:50194393|50194782 hsa-miR-874-3p 1 0 0
chr17:50194393|50194782 hsa-miR-3189-5p 1 0 0
chr17:50194393|50194782 hsa-miR-1915-5p 1 0 0
chr17:50194393|50194782 hsa-miR-4725-5p 1 0 0
chr17:50194393|50194782 hsa-miR-185-3p 1 0 0
chr17:50194393|50194782 hsa-miR-6774-3p 1 0 0
chr17:50194393|50194782 hsa-miR-6735-3p 1 0 0
chr17:50194393|50194782 hsa-miR-6882-3p 1 0 0
chr17:50194393|50194782 hsa-miR-4713-5p 1 0 0
chr17:50194393|50194782 hsa-miR-1343-3p 1 0 0
chr17:50194393|50194782 hsa-miR-939-3p 1 0 0
chr17:50194393|50194782 hsa-miR-7109-5p 1 0 0
chr17:50194393|50194782 hsa-miR-4793-5p 1 0 0
chr17:50194393|50194782 hsa-miR-4763-5p 1 0 0
chr17:50194393|50194782 hsa-miR-4707-3p 1 0 0
chr17:50194393|50194782 hsa-miR-6894-3p 1 0 0
chr17:50194393|50194782 hsa-miR-6757-3p 1 0 0
chr17:50194393|50194782 hsa-miR-7113-3p 1 0 0
chr17:50194393|50194782 hsa-miR-3191-5p 1 0 0
chr17:50194393|50194782 hsa-miR-3677-3p 1 0 0
chr17:50194393|50194782 hsa-miR-6878-3p 1 0 0
chr17:50194393|50194782 hsa-miR-4787-5p 1 0 0
chr17:50194393|50194782 hsa-miR-4446-5p 1 0 0
chr17:50194393|50194782 hsa-miR-6742-3p 1 0 0
chr17:50194393|50194782 hsa-miR-339-5p 1 0 0
chr17:50194393|50194782 hsa-miR-4646-3p 1 0 0
chr17:50194393|50194782 hsa-miR-4707-5p 1 0 0
chr17:50194393|50194782 hsa-miR-6743-3p 1 0 0
chr17:50194393|50194782 hsa-miR-6752-3p 1 0 0
chr17:50194393|50194782 hsa-miR-6513-3p 1 0 0
chr17:50194393|50194782 hsa-miR-3940-3p 1 0 0
chr17:50194393|50194782 hsa-miR-6886-3p 1 0 0
chr17:50194393|50194782 hsa-miR-6880-3p 1 0 0
chr17:50194393|50194782 hsa-miR-7152-5p 1 0 0
chr17:50194393|50194782 hsa-miR-3173-5p 1 0 0
chr17:50194393|50194782 hsa-miR-4433b-5p 1 0 0
chr17:50194393|50194782 hsa-miR-4763-3p 1 0 0
chr17:50194393|50194782 hsa-miR-6774-5p 1 0 0
chr17:50194393|50194782 hsa-miR-3127-3p 1 0 0
chr17:50194393|50194782 hsa-miR-4685-3p 1 0 0
chr17:50194393|50194782 hsa-miR-1915-3p 1 0 0
chr17:50194393|50194782 hsa-miR-6836-5p 1 0 0
chr17:50194393|50194782 hsa-miR-6777-5p 1 0 0
chr17:50194393|50194782 hsa-miR-3187-5p 1 0 0
chr17:50194393|50194782 hsa-miR-939-5p 1 0 0
chr17:50194393|50194782 hsa-miR-6799-3p 1 0 0
chr17:50194393|50194782 hsa-miR-6791-5p 1 0 0
chr17:50194393|50194782 hsa-miR-4722-3p 1 0 0
chr17:50194393|50194782 hsa-miR-6893-3p 1 0 0
chr17:50194393|50194782 hsa-miR-10401-3p 1 0 0
chr17:50194393|50194782 hsa-miR-6801-3p 1 0 0
chr17:50194393|50194782 hsa-miR-6775-3p 1 0 0
chr17:50194393|50194782 hsa-miR-330-5p 1 0 0
chr17:50194393|50194782 hsa-miR-6744-3p 1 0 0
chr17:50194393|50194782 hsa-miR-6783-3p 1 0 0
chr17:50194393|50194782 hsa-miR-10394-5p 1 0 0
chr17:50194393|50194782 hsa-miR-6843-3p 1 0 0
chr17:50194393|50194782 hsa-miR-6820-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:50194393|50194782
ORF Type ORF1
Protein Length 95
Nucleotide Length 285
Protein Sequence MPRAKRGRRCPGSGRVSPPAARRGYLGTSNTICARETTATRSTLQEERRPVNSATHRHQPGNEGGAGGGGQGHLHARQGVRAGQWVRVHLELLAF
Nucleotide Sequence TTGCCACGGGCCAAAAGAGGAAGAAGATGCCCAGGGAGCGGCAGGGTCAGCCCCCCGGCCGCAAGGAGAGGTTACCTTGGGACCAGCAACACCATCTGCGCCAGGGAAACCACGGCTACCAGGTCCACCCTGCAGGAGGAGAGGAGGCCAGTGAACTCCGCGACACACAGGCACCAGCCAGGCAATGAGGGTGGAGCGGGAGGGGGCGGGCAGGGACACTTACACGCTCGCCAGGGGGTCCGGGCAGGCCAGTGGGTCCGGGTTCACCTCGAGCTCCTCGCTTTC
CircID chr17:50194393|50194782
ORF Type ORF2
Protein Length 25
Nucleotide Length 78
Protein Sequence MGPATPSAPGKPRLPGPPCRRRGGQ
Nucleotide Sequence TTGGGACCAGCAACACCATCTGCGCCAGGGAAACCACGGCTACCAGGTCCACCCTGCAGGAGGAGAGGAGGCCAGTGA
CircID chr17:50194393|50194782
ORF Type ORF3
Protein Length 33
Nucleotide Length 99
Protein Sequence MRVEREGAGRDTYTLARGSGQASGSGFTSSSSL
Nucleotide Sequence ATGAGGGTGGAGCGGGAGGGGGCGGGCAGGGACACTTACACGCTCGCCAGGGGGTCCGGGCAGGCCAGTGGGTCCGGGTTCACCTCGAGCTCCTCGCTT
CircID chr17:50194393|50194782
ORF Type ORF4
Protein Length 93
Nucleotide Length 282
Protein Sequence MGPAGPGEPRSPAGPWLGEVTGTVRVSSLWLFATGQKRKKMPRERQGQPPGRKERLPWDQQHHLRQGNHGYQVHPAGGEEASELRDTQAPARQ
Nucleotide Sequence TTGGGGCCAGCAGGGCCAGGAGAACCACGTTCACCAGCGGGACCCTGGTTGGGGGAAGTCACAGGAACAGTTAGGGTCTCAAGTTTGTGGCTCTTTGCCACGGGCCAAAAGAGGAAGAAGATGCCCAGGGAGCGGCAGGGTCAGCCCCCCGGCCGCAAGGAGAGGTTACCTTGGGACCAGCAACACCATCTGCGCCAGGGAAACCACGGCTACCAGGTCCACCCTGCAGGAGGAGAGGAGGCCAGTGAACTCCGCGACACACAGGCACCAGCCAGGCAATGA
CircID chr17:50194393|50194782
ORF Type ORF5
Protein Length 78
Nucleotide Length 237
Protein Sequence MPAPSRSTLIAWLVPVCRGVHWPPLLLQGGPGSRGFPGADGVAGPKVTSPCGRGADPAAPWASSSSFGPWQRATNLRP
Nucleotide Sequence CTGCCCGCCCCCTCCCGCTCCACCCTCATTGCCTGGCTGGTGCCTGTGTGTCGCGGAGTTCACTGGCCTCCTCTCCTCCTGCAGGGTGGACCTGGTAGCCGTGGTTTCCCTGGCGCAGATGGTGTTGCTGGTCCCAAGGTAACCTCTCCTTGCGGCCGGGGGGCTGACCCTGCCGCTCCCTGGGCATCTTCTTCCTCTTTTGGCCCGTGGCAAAGAGCCACAAACTTGAGACCCTAA
CircID chr17:50194393|50194782
ORF Type ORF6
Protein Length 37
Nucleotide Length 114
Protein Sequence MPGWCLCVAEFTGLLSSCRVDLVAVVSLAQMVLLVPR
Nucleotide Sequence TTGCCTGGCTGGTGCCTGTGTGTCGCGGAGTTCACTGGCCTCCTCTCCTCCTGCAGGGTGGACCTGGTAGCCGTGGTTTCCCTGGCGCAGATGGTGTTGCTGGTCCCAAGGTAA
CircID chr17:50194393|50194782
ORF Type ORF7
Protein Length 43
Nucleotide Length 132
Protein Sequence MPGPPGERVSVPARPLPLHPHCLAGACVSRSSLASSPPAGWTW
Nucleotide Sequence CTGCCCGGACCCCCTGGCGAGCGTGTAAGTGTCCCTGCCCGCCCCCTCCCGCTCCACCCTCATTGCCTGGCTGGTGCCTGTGTGTCGCGGAGTTCACTGGCCTCCTCTCCTCCTGCAGGGTGGACCTGGTAG
CircID chr17:50194393|50194782
ORF Type ORF8
Protein Length 46
Nucleotide Length 138
Protein Sequence MGIFFLFWPVAKSHKLETLTVPVTSPNQGPAGERGSPGPAGPKGSP
Nucleotide Sequence CTGGGCATCTTCTTCCTCTTTTGGCCCGTGGCAAAGAGCCACAAACTTGAGACCCTAACTGTTCCTGTGACTTCCCCCAACCAGGGTCCCGCTGGTGAACGTGGTTCTCCTGGCCCTGCTGGCCCCAAAGGATCTCCT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab