CircRNA Information

General Information
circRNA Basic Information
CircID chr17:50195232|50195478
Strand -
CircType exon
Host Gene ENSG00000108821.12;
Algorism CIRI2;
Sequence GCTGTTACCCTTGGGACCAGGAGGGCCGCCGGGGCCCTGGGGTCCAGAGGGGCCTCGGGCACCAGGGAAGCCAGGAGCACCAGCAATACCAGGAGCACCATTGGCACCTTTAGCACCAGGCTGTCCATCAGCACCAGGGTTTCC
circRNA Expression in different cancers

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circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:50195232|50195478 hsa-miR-18a-5p 0 0 1
chr17:50195232|50195478 hsa-miR-18a-3p 0 0 1
chr17:50195232|50195478 hsa-miR-137-5p 0 0 1
chr17:50195232|50195478 hsa-miR-137-3p 0 0 1
chr17:50195232|50195478 hsa-miR-346 1 0 1
chr17:50195232|50195478 hsa-miR-422a 0 0 1
chr17:50195232|50195478 hsa-miR-18b-5p 0 0 1
chr17:50195232|50195478 hsa-miR-18b-3p 0 0 1
chr17:50195232|50195478 hsa-miR-596 1 1 1
chr17:50195232|50195478 hsa-miR-626 0 0 1
chr17:50195232|50195478 hsa-miR-632 1 1 1
chr17:50195232|50195478 hsa-miR-645 0 0 1
chr17:50195232|50195478 hsa-miR-548m 0 0 1
chr17:50195232|50195478 hsa-miR-296-5p 0 0 1
chr17:50195232|50195478 hsa-miR-532-3p 0 0 1
chr17:50195232|50195478 hsa-miR-1184 0 0 1
chr17:50195232|50195478 hsa-miR-767-3p 0 0 1
chr17:50195232|50195478 hsa-miR-188-3p 0 0 1
chr17:50195232|50195478 hsa-miR-324-3p 0 0 1
chr17:50195232|50195478 hsa-miR-483-3p 0 1 1
chr17:50195232|50195478 hsa-miR-455-3p 0 0 1
chr17:50195232|50195478 hsa-miR-1274a 0 0 1
chr17:50195232|50195478 hsa-miR-642 0 0 1
chr17:50195232|50195478 hsa-miR-220c 0 0 1
chr17:50195232|50195478 hsa-miR-378 0 0 1
chr17:50195232|50195478 hsa-miR-138 0 0 1
chr17:50195232|50195478 hsa-miR-194 0 0 1
chr17:50195232|50195478 hsa-miR-484 1 0 0
chr17:50195232|50195478 hsa-miR-636 1 0 0
chr17:50195232|50195478 hsa-miR-663b 1 0 0
chr17:50195232|50195478 hsa-miR-1260a 1 0 0
chr17:50195232|50195478 hsa-miR-1913 1 1 0
chr17:50195232|50195478 hsa-miR-1976 0 1 0
chr17:50195232|50195478 hsa-miR-548q 0 1 0
chr17:50195232|50195478 hsa-miR-3147 1 0 0
chr17:50195232|50195478 hsa-miR-1260b 1 0 0
chr17:50195232|50195478 hsa-miR-3907 1 1 0
chr17:50195232|50195478 hsa-miR-3972 1 0 0
chr17:50195232|50195478 hsa-miR-8075 0 1 0
chr17:50195232|50195478 hsa-miR-12116 1 0 0
chr17:50195232|50195478 hsa-miR-138-5p 1 1 0
chr17:50195232|50195478 hsa-miR-6747-3p 1 1 0
chr17:50195232|50195478 hsa-miR-6836-3p 1 1 0
chr17:50195232|50195478 hsa-miR-671-5p 0 1 0
chr17:50195232|50195478 hsa-miR-6741-5p 1 0 0
chr17:50195232|50195478 hsa-miR-6762-3p 1 0 0
chr17:50195232|50195478 hsa-miR-6832-3p 0 1 0
chr17:50195232|50195478 hsa-miR-6728-3p 0 1 0
chr17:50195232|50195478 hsa-miR-5008-5p 0 1 0
chr17:50195232|50195478 hsa-miR-6882-3p 1 1 0
chr17:50195232|50195478 hsa-miR-1343-3p 1 0 0
chr17:50195232|50195478 hsa-miR-6772-3p 1 1 0
chr17:50195232|50195478 hsa-miR-4763-5p 1 1 0
chr17:50195232|50195478 hsa-miR-4707-3p 1 0 0
chr17:50195232|50195478 hsa-miR-2277-3p 1 0 0
chr17:50195232|50195478 hsa-miR-1908-3p 1 0 0
chr17:50195232|50195478 hsa-miR-6894-3p 1 1 0
chr17:50195232|50195478 hsa-miR-5001-3p 0 1 0
chr17:50195232|50195478 hsa-miR-7113-3p 1 1 0
chr17:50195232|50195478 hsa-miR-4667-3p 0 1 0
chr17:50195232|50195478 hsa-miR-339-5p 1 0 0
chr17:50195232|50195478 hsa-miR-7160-3p 0 1 0
chr17:50195232|50195478 hsa-miR-4707-5p 0 1 0
chr17:50195232|50195478 hsa-miR-1237-3p 1 0 0
chr17:50195232|50195478 hsa-miR-1250-5p 0 1 0
chr17:50195232|50195478 hsa-miR-3120-5p 0 1 0
chr17:50195232|50195478 hsa-miR-6811-3p 1 0 0
chr17:50195232|50195478 hsa-miR-660-3p 0 1 0
chr17:50195232|50195478 hsa-miR-1910-5p 1 1 0
chr17:50195232|50195478 hsa-miR-2276-5p 0 1 0
chr17:50195232|50195478 hsa-miR-4746-3p 1 0 0
chr17:50195232|50195478 hsa-miR-6814-5p 0 1 0
chr17:50195232|50195478 hsa-miR-1296-5p 0 1 0
chr17:50195232|50195478 hsa-miR-6738-3p 0 1 0
chr17:50195232|50195478 hsa-miR-4749-3p 0 1 0
chr17:50195232|50195478 hsa-miR-4649-3p 1 0 0
chr17:50195232|50195478 hsa-miR-541-5p 1 0 0
chr17:50195232|50195478 hsa-miR-6748-3p 0 1 0
chr17:50195232|50195478 hsa-miR-4433a-5p 0 1 0
chr17:50195232|50195478 hsa-miR-1915-3p 0 1 0
chr17:50195232|50195478 hsa-miR-6836-5p 0 1 0
chr17:50195232|50195478 hsa-miR-4632-5p 1 0 0
chr17:50195232|50195478 hsa-miR-4685-5p 0 1 0
chr17:50195232|50195478 hsa-miR-3187-5p 1 0 0
chr17:50195232|50195478 hsa-miR-3085-5p 1 1 0
chr17:50195232|50195478 hsa-miR-10396a-3p 0 1 0
chr17:50195232|50195478 hsa-miR-10396b-3p 0 1 0
chr17:50195232|50195478 hsa-miR-6791-3p 1 0 0
chr17:50195232|50195478 hsa-miR-6791-5p 1 0 0
chr17:50195232|50195478 hsa-miR-6753-3p 1 0 0
chr17:50195232|50195478 hsa-miR-4722-3p 1 0 0
chr17:50195232|50195478 hsa-miR-6893-3p 1 1 0
chr17:50195232|50195478 hsa-miR-6805-3p 1 0 0
chr17:50195232|50195478 hsa-miR-3059-5p 1 0 0
chr17:50195232|50195478 hsa-miR-3085-3p 0 1 0
chr17:50195232|50195478 hsa-miR-6783-3p 0 1 0
chr17:50195232|50195478 hsa-miR-6876-3p 0 1 0
chr17:50195232|50195478 hsa-miR-6781-3p 0 1 0
chr17:50195232|50195478 hsa-miR-6764-5p 0 1 0
chr17:50195232|50195478 hsa-miR-6504-5p 0 1 0
chr17:50195232|50195478 hsa-miR-5588-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:50195232|50195478
ORF Type ORF1
Protein Length 36
Nucleotide Length 108
Protein Sequence MGSRGASGTREARSTSNTRSTIGTFSTRLSISTRVS
Nucleotide Sequence CTGGGGTCCAGAGGGGCCTCGGGCACCAGGGAAGCCAGGAGCACCAGCAATACCAGGAGCACCATTGGCACCTTTAGCACCAGGCTGTCCATCAGCACCAGGGTTTCC
CircID chr17:50195232|50195478
ORF Type ORF2
Protein Length 47
Nucleotide Length 141
Protein Sequence LLPLGPGGPPGPWGPEGPRAPGKPGAPAIPGAPLAPLAPGCPSAPGF
Nucleotide Sequence CTGTTACCCTTGGGACCAGGAGGGCCGCCGGGGCCCTGGGGTCCAGAGGGGCCTCGGGCACCAGGGAAGCCAGGAGCACCAGCAATACCAGGAGCACCATTGGCACCTTTAGCACCAGGCTGTCCATCAGCACCAGGGTTT
CircID chr17:50195232|50195478
ORF Type ORF3
Protein Length 45
Nucleotide Length 135
Protein Sequence MVLMDSLVLKVPMVLLVLLVLLASLVPEAPLDPRAPAALLVPRVT
Nucleotide Sequence CTGGTGCTGATGGACAGCCTGGTGCTAAAGGTGCCAATGGTGCTCCTGGTATTGCTGGTGCTCCTGGCTTCCCTGGTGCCCGAGGCCCCTCTGGACCCCAGGGCCCCGGCGGCCCTCCTGGTCCCAAGGGTAACA
CircID chr17:50195232|50195478
ORF Type ORF1
Protein Length 48
Nucleotide Length 147
Protein Sequence MGSRGASGTREARSTSNTRSTLWEADSQGVSLGAEGKGQAGCRRQEWD
Nucleotide Sequence CTGGGGTCCAGAGGGGCCTCGGGCACCAGGGAAGCCAGGAGCACCAGCAATACCAGGAGCACCCTGTGGGAGGCAGACAGCCAGGGCGTGAGCCTAGGAGCAGAGGGAAAGGGGCAGGCAGGCTGCAGGCGGCAGGAGTGGGACTGA
CircID chr17:50195232|50195478
ORF Type ORF2
Protein Length 41
Nucleotide Length 126
Protein Sequence LLPLGPGGPPGPWGPEGPRAPGKPGAPAIPGAPCGRQTARA
Nucleotide Sequence CTGTTACCCTTGGGACCAGGAGGGCCGCCGGGGCCCTGGGGTCCAGAGGGGCCTCGGGCACCAGGGAAGCCAGGAGCACCAGCAATACCAGGAGCACCCTGTGGGAGGCAGACAGCCAGGGCGTGA
CircID chr17:50195232|50195478
ORF Type ORF3
Protein Length 29
Nucleotide Length 87
Protein Sequence MQAAGVGLKPGRILTLAPLAPGCPSAPGF
Nucleotide Sequence CTGCAGGCGGCAGGAGTGGGACTGAAGCCTGGCAGGATACTTACATTGGCACCTTTAGCACCAGGCTGTCCATCAGCACCAGGGTTT
CircID chr17:50195232|50195478
ORF Type ORF4
Protein Length 62
Nucleotide Length 189
Protein Sequence MPGFSPTPAACSLPAPFPLLLGSRPGCLPPTGCSWYCWCSWLPWCPRPLWTPGPRRPSWSQG
Nucleotide Sequence CTGCCAGGCTTCAGTCCCACTCCTGCCGCCTGCAGCCTGCCTGCCCCTTTCCCTCTGCTCCTAGGCTCACGCCCTGGCTGTCTGCCTCCCACAGGGTGCTCCTGGTATTGCTGGTGCTCCTGGCTTCCCTGGTGCCCGAGGCCCCTCTGGACCCCAGGGCCCCGGCGGCCCTCCTGGTCCCAAGGGTAA
CircID chr17:50195232|50195478
ORF Type ORF5
Protein Length 40
Nucleotide Length 120
Protein Sequence MAVCLPQGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNS
Nucleotide Sequence CTGGCTGTCTGCCTCCCACAGGGTGCTCCTGGTATTGCTGGTGCTCCTGGCTTCCCTGGTGCCCGAGGCCCCTCTGGACCCCAGGGCCCCGGCGGCCCTCCTGGTCCCAAGGGTAACAGC
CircID chr17:50195232|50195478
ORF Type ORF6
Protein Length 54
Nucleotide Length 162
Protein Sequence MQPACPFPSAPRLTPWLSASHRVLLVLLVLLASLVPEAPLDPRAPAALLVPRVT
Nucleotide Sequence CTGCAGCCTGCCTGCCCCTTTCCCTCTGCTCCTAGGCTCACGCCCTGGCTGTCTGCCTCCCACAGGGTGCTCCTGGTATTGCTGGTGCTCCTGGCTTCCCTGGTGCCCGAGGCCCCTCTGGACCCCAGGGCCCCGGCGGCCCTCCTGGTCCCAAGGGTAACA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab