CircRNA Information

General Information
circRNA Basic Information
CircID chr17:50195249|50195628
Strand -
CircType exon
Host Gene ENSG00000108821.12;
Algorism CIRI2;
Sequence CAGGAGGGCCGCCGGGGCCCTGGGGTCCAGAGGGGCCTCGGGCACCAGGGAAGCCAGGAGCACCAGCAATACCAGGAGCACCCTGTGGGAGGCAGACAGCCAGGGCGTGAGCCTAGGAGCAGAGGGAAAGGGGCAGGCAGGCTGCAGGCGGCAGGAGTGGGACTGAAGCCTGGCAGGATACTTACATTGGCACCTTTAGCACCAGGCTGTCCATCAGCACCAGGGTTTCCCTGTGGCACAGAGAAAGGAGTGTCAGCAACAGGCAAGGACTCTGAGGTTAGAAAGTGGCAAAGGGGACACTGAGTCGGGGACACTTACAGCAGGGCCAGCAGCACCAGCAGGGCCAGGGGGGCCAGGCTCACCACGCACACCCTGGGGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:50195249|50195628 hsa-miR-18a-5p 0 0 1
chr17:50195249|50195628 hsa-miR-18a-3p 0 0 1
chr17:50195249|50195628 hsa-miR-210-5p 0 0 1
chr17:50195249|50195628 hsa-miR-210-3p 0 0 1
chr17:50195249|50195628 hsa-miR-137-5p 0 0 1
chr17:50195249|50195628 hsa-miR-137-3p 0 0 1
chr17:50195249|50195628 hsa-miR-370-5p 0 0 1
chr17:50195249|50195628 hsa-miR-370-3p 0 0 1
chr17:50195249|50195628 hsa-miR-328-5p 0 0 1
chr17:50195249|50195628 hsa-miR-328-3p 0 0 1
chr17:50195249|50195628 hsa-miR-346 1 0 1
chr17:50195249|50195628 hsa-miR-422a 0 0 1
chr17:50195249|50195628 hsa-miR-18b-5p 0 0 1
chr17:50195249|50195628 hsa-miR-18b-3p 0 0 1
chr17:50195249|50195628 hsa-miR-595 0 0 1
chr17:50195249|50195628 hsa-miR-596 1 0 1
chr17:50195249|50195628 hsa-miR-626 0 0 1
chr17:50195249|50195628 hsa-miR-632 1 0 1
chr17:50195249|50195628 hsa-miR-645 0 0 1
chr17:50195249|50195628 hsa-miR-1227-5p 0 0 1
chr17:50195249|50195628 hsa-miR-1227-3p 0 0 1
chr17:50195249|50195628 hsa-miR-1291 0 0 1
chr17:50195249|50195628 hsa-miR-548m 0 0 1
chr17:50195249|50195628 hsa-miR-296-5p 0 0 1
chr17:50195249|50195628 hsa-miR-532-3p 0 0 1
chr17:50195249|50195628 hsa-miR-1184 0 0 1
chr17:50195249|50195628 hsa-miR-502-5p 0 0 1
chr17:50195249|50195628 hsa-miR-331-3p 0 0 1
chr17:50195249|50195628 hsa-miR-767-3p 0 0 1
chr17:50195249|50195628 hsa-miR-188-3p 0 0 1
chr17:50195249|50195628 hsa-miR-628-5p 0 0 1
chr17:50195249|50195628 hsa-miR-576-5p 0 0 1
chr17:50195249|50195628 hsa-miR-324-3p 0 0 1
chr17:50195249|50195628 hsa-miR-483-3p 0 0 1
chr17:50195249|50195628 hsa-miR-455-3p 0 0 1
chr17:50195249|50195628 hsa-miR-1274a 0 0 1
chr17:50195249|50195628 hsa-miR-642 0 0 1
chr17:50195249|50195628 hsa-miR-220c 0 0 1
chr17:50195249|50195628 hsa-miR-378 0 0 1
chr17:50195249|50195628 hsa-miR-138 0 0 1
chr17:50195249|50195628 hsa-miR-484 1 0 0
chr17:50195249|50195628 hsa-miR-623 1 0 0
chr17:50195249|50195628 hsa-miR-636 1 0 0
chr17:50195249|50195628 hsa-miR-661 1 0 0
chr17:50195249|50195628 hsa-miR-1260a 1 0 0
chr17:50195249|50195628 hsa-miR-1913 1 0 0
chr17:50195249|50195628 hsa-miR-1976 0 1 0
chr17:50195249|50195628 hsa-miR-548q 0 1 0
chr17:50195249|50195628 hsa-miR-1260b 1 0 0
chr17:50195249|50195628 hsa-miR-4313 1 0 0
chr17:50195249|50195628 hsa-miR-4292 1 0 0
chr17:50195249|50195628 hsa-miR-3657 0 1 0
chr17:50195249|50195628 hsa-miR-3907 1 0 0
chr17:50195249|50195628 hsa-miR-4455 0 1 0
chr17:50195249|50195628 hsa-miR-4518 0 1 0
chr17:50195249|50195628 hsa-miR-3972 1 0 0
chr17:50195249|50195628 hsa-miR-8057 0 1 0
chr17:50195249|50195628 hsa-miR-8075 0 1 0
chr17:50195249|50195628 hsa-miR-12116 1 0 0
chr17:50195249|50195628 hsa-miR-138-5p 1 0 0
chr17:50195249|50195628 hsa-miR-214-5p 1 0 0
chr17:50195249|50195628 hsa-miR-6747-3p 1 0 0
chr17:50195249|50195628 hsa-miR-4726-3p 1 0 0
chr17:50195249|50195628 hsa-miR-6836-3p 1 0 0
chr17:50195249|50195628 hsa-miR-671-5p 1 0 0
chr17:50195249|50195628 hsa-miR-3692-5p 0 1 0
chr17:50195249|50195628 hsa-miR-6741-5p 1 0 0
chr17:50195249|50195628 hsa-miR-6762-3p 1 0 0
chr17:50195249|50195628 hsa-miR-874-3p 1 0 0
chr17:50195249|50195628 hsa-miR-4728-3p 1 0 0
chr17:50195249|50195628 hsa-miR-1915-5p 1 0 0
chr17:50195249|50195628 hsa-miR-6832-3p 0 1 0
chr17:50195249|50195628 hsa-miR-185-3p 1 0 0
chr17:50195249|50195628 hsa-miR-4697-3p 0 1 0
chr17:50195249|50195628 hsa-miR-6765-3p 1 0 0
chr17:50195249|50195628 hsa-miR-6728-3p 0 1 0
chr17:50195249|50195628 hsa-miR-6821-5p 0 1 0
chr17:50195249|50195628 hsa-miR-6774-3p 1 0 0
chr17:50195249|50195628 hsa-miR-5008-5p 0 1 0
chr17:50195249|50195628 hsa-miR-6882-3p 1 0 0
chr17:50195249|50195628 hsa-miR-1343-3p 1 0 0
chr17:50195249|50195628 hsa-miR-6772-3p 1 0 0
chr17:50195249|50195628 hsa-miR-4763-5p 1 0 0
chr17:50195249|50195628 hsa-miR-6763-3p 1 0 0
chr17:50195249|50195628 hsa-miR-4707-3p 1 0 0
chr17:50195249|50195628 hsa-miR-1908-3p 1 0 0
chr17:50195249|50195628 hsa-miR-4783-3p 1 0 0
chr17:50195249|50195628 hsa-miR-6894-3p 1 0 0
chr17:50195249|50195628 hsa-miR-6514-3p 1 0 0
chr17:50195249|50195628 hsa-miR-5001-3p 0 1 0
chr17:50195249|50195628 hsa-miR-7113-3p 1 0 0
chr17:50195249|50195628 hsa-miR-4640-3p 1 0 0
chr17:50195249|50195628 hsa-miR-339-5p 1 0 0
chr17:50195249|50195628 hsa-miR-7160-3p 0 1 0
chr17:50195249|50195628 hsa-miR-211-5p 1 0 0
chr17:50195249|50195628 hsa-miR-1237-3p 1 0 0
chr17:50195249|50195628 hsa-miR-1250-5p 1 0 0
chr17:50195249|50195628 hsa-miR-3120-5p 0 1 0
chr17:50195249|50195628 hsa-miR-6811-3p 1 0 0
chr17:50195249|50195628 hsa-miR-6499-3p 0 1 0
chr17:50195249|50195628 hsa-miR-6813-3p 1 0 0
chr17:50195249|50195628 hsa-miR-6730-3p 0 1 0
chr17:50195249|50195628 hsa-miR-1910-5p 1 0 0
chr17:50195249|50195628 hsa-miR-6778-3p 0 1 0
chr17:50195249|50195628 hsa-miR-2276-5p 0 1 0
chr17:50195249|50195628 hsa-miR-1296-5p 1 0 0
chr17:50195249|50195628 hsa-miR-3160-5p 0 1 0
chr17:50195249|50195628 hsa-miR-6738-3p 0 1 0
chr17:50195249|50195628 hsa-miR-4749-3p 0 1 0
chr17:50195249|50195628 hsa-miR-4649-3p 1 0 0
chr17:50195249|50195628 hsa-miR-204-5p 1 0 0
chr17:50195249|50195628 hsa-miR-541-5p 1 0 0
chr17:50195249|50195628 hsa-miR-6748-3p 0 1 0
chr17:50195249|50195628 hsa-miR-449c-3p 1 0 0
chr17:50195249|50195628 hsa-miR-4433a-5p 0 1 0
chr17:50195249|50195628 hsa-miR-3173-5p 0 1 0
chr17:50195249|50195628 hsa-miR-552-5p 1 0 0
chr17:50195249|50195628 hsa-miR-3127-3p 1 0 0
chr17:50195249|50195628 hsa-miR-4755-5p 1 0 0
chr17:50195249|50195628 hsa-miR-1915-3p 1 0 0
chr17:50195249|50195628 hsa-miR-6836-5p 1 0 0
chr17:50195249|50195628 hsa-miR-4685-5p 0 1 0
chr17:50195249|50195628 hsa-miR-3187-5p 1 0 0
chr17:50195249|50195628 hsa-miR-3085-5p 1 0 0
chr17:50195249|50195628 hsa-miR-10396a-3p 0 1 0
chr17:50195249|50195628 hsa-miR-10396b-3p 0 1 0
chr17:50195249|50195628 hsa-miR-6799-3p 1 0 0
chr17:50195249|50195628 hsa-miR-6791-3p 1 0 0
chr17:50195249|50195628 hsa-miR-6791-5p 1 0 0
chr17:50195249|50195628 hsa-miR-6753-3p 1 0 0
chr17:50195249|50195628 hsa-miR-4722-3p 1 0 0
chr17:50195249|50195628 hsa-miR-6893-3p 1 0 0
chr17:50195249|50195628 hsa-miR-9851-5p 1 0 0
chr17:50195249|50195628 hsa-miR-193b-3p 1 0 0
chr17:50195249|50195628 hsa-miR-6805-3p 1 0 0
chr17:50195249|50195628 hsa-miR-6810-3p 1 0 0
chr17:50195249|50195628 hsa-miR-6775-3p 1 0 0
chr17:50195249|50195628 hsa-miR-3059-5p 1 0 0
chr17:50195249|50195628 hsa-miR-3085-3p 0 1 0
chr17:50195249|50195628 hsa-miR-6744-3p 0 1 0
chr17:50195249|50195628 hsa-miR-6783-3p 0 1 0
chr17:50195249|50195628 hsa-miR-6876-3p 0 1 0
chr17:50195249|50195628 hsa-miR-6781-3p 1 0 0
chr17:50195249|50195628 hsa-miR-6764-5p 0 1 0
chr17:50195249|50195628 hsa-miR-5006-3p 0 1 0
chr17:50195249|50195628 hsa-miR-6504-5p 0 1 0
chr17:50195249|50195628 hsa-miR-3922-3p 1 0 0
chr17:50195249|50195628 hsa-miR-3121-5p 0 1 0
chr17:50195249|50195628 hsa-miR-3064-3p 0 1 0
chr17:50195249|50195628 hsa-miR-5588-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:50195249|50195628
ORF Type ORF1
Protein Length 53
Nucleotide Length 162
Protein Sequence MQAAGVGLKPGRILTLAPLAPGCPSAPGFPCGTEKGVSATGKDSEVRKWQRGH
Nucleotide Sequence CTGCAGGCGGCAGGAGTGGGACTGAAGCCTGGCAGGATACTTACATTGGCACCTTTAGCACCAGGCTGTCCATCAGCACCAGGGTTTCCCTGTGGCACAGAGAAAGGAGTGTCAGCAACAGGCAAGGACTCTGAGGTTAGAAAGTGGCAAAGGGGACACTGA
CircID chr17:50195249|50195628
ORF Type ORF2
Protein Length 48
Nucleotide Length 147
Protein Sequence MGSRGASGTREARSTSNTRSTLWEADSQGVSLGAEGKGQAGCRRQEWD
Nucleotide Sequence CTGGGGTCCAGAGGGGCCTCGGGCACCAGGGAAGCCAGGAGCACCAGCAATACCAGGAGCACCCTGTGGGAGGCAGACAGCCAGGGCGTGAGCCTAGGAGCAGAGGGAAAGGGGCAGGCAGGCTGCAGGCGGCAGGAGTGGGACTGA
CircID chr17:50195249|50195628
ORF Type ORF3
Protein Length 36
Nucleotide Length 108
Protein Sequence MRLESGKGDTESGTLTAGPAAPAGPGGPGSPRTPWG
Nucleotide Sequence CTGAGGTTAGAAAGTGGCAAAGGGGACACTGAGTCGGGGACACTTACAGCAGGGCCAGCAGCACCAGCAGGGCCAGGGGGGCCAGGCTCACCACGCACACCCTGGGGA
CircID chr17:50195249|50195628
ORF Type ORF4
Protein Length 27
Nucleotide Length 81
Protein Sequence MSRGHLQQGQQHQQGQGGQAHHAHPGD
Nucleotide Sequence CTGAGTCGGGGACACTTACAGCAGGGCCAGCAGCACCAGCAGGGCCAGGGGGGCCAGGCTCACCACGCACACCCTGGGGAC
CircID chr17:50195249|50195628
ORF Type ORF5
Protein Length 88
Nucleotide Length 264
Protein Sequence MPVADTPFSVPQGNPGADGQPGAKGANVSILPGFSPTPAACSLPAPFPLLLGSRPGCLPPTGCSWYCWCSWLPWCPRPLWTPGPRRPS
Nucleotide Sequence TTGCCTGTTGCTGACACTCCTTTCTCTGTGCCACAGGGAAACCCTGGTGCTGATGGACAGCCTGGTGCTAAAGGTGCCAATGTAAGTATCCTGCCAGGCTTCAGTCCCACTCCTGCCGCCTGCAGCCTGCCTGCCCCTTTCCCTCTGCTCCTAGGCTCACGCCCTGGCTGTCTGCCTCCCACAGGGTGCTCCTGGTATTGCTGGTGCTCCTGGCTTCCCTGGTGCCCGAGGCCCCTCTGGACCCCAGGGCCCCGGCGGCCCTCC
CircID chr17:50195249|50195628
ORF Type ORF6
Protein Length 26
Nucleotide Length 81
Protein Sequence MLLTLLSLCHRETLVLMDSLVLKVPM
Nucleotide Sequence CTGTTGCTGACACTCCTTTCTCTGTGCCACAGGGAAACCCTGGTGCTGATGGACAGCCTGGTGCTAAAGGTGCCAATGTAA
CircID chr17:50195249|50195628
ORF Type ORF7
Protein Length 34
Nucleotide Length 102
Protein Sequence MAVCLPQGAPGIAGAPGFPGARGPSGPQGPGGPP
Nucleotide Sequence CTGGCTGTCTGCCTCCCACAGGGTGCTCCTGGTATTGCTGGTGCTCCTGGCTTCCCTGGTGCCCGAGGCCCCTCTGGACCCCAGGGCCCCGGCGGCCCTCCT
CircID chr17:50195249|50195628
ORF Type ORF8
Protein Length 49
Nucleotide Length 147
Protein Sequence MQPACPFPSAPRLTPWLSASHRVLLVLLVLLASLVPEAPLDPRAPAALL
Nucleotide Sequence CTGCAGCCTGCCTGCCCCTTTCCCTCTGCTCCTAGGCTCACGCCCTGGCTGTCTGCCTCCCACAGGGTGCTCCTGGTATTGCTGGTGCTCCTGGCTTCCCTGGTGCCCGAGGCCCCTCTGGACCCCAGGGCCCCGGCGGCCCTCCTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab