CircRNA Information

General Information
circRNA Basic Information
CircID chr17:50196625|50197766
Strand -
CircType exon
Host Gene ENSG00000108821.12;
Algorism CIRI2;
Sequence CAGCAGGACCAGCATCTCCCTTGGCACCATCCAAACCACTGAAACCTCTGTGTCCCTTCATTCCAGGGAGGCCAGCTGTTCCGGGCAATCCTCGAGCACCCTGAGGCCCAGGAGGCCCACGCTCACCAGGACGACCAGGTTTTCCAGCTTCCCCATCATCTCCATTCTTTCCAGGGGGACCTGGGGGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:50196625|50197766 hsa-miR-143-5p 0 0 1
chr17:50196625|50197766 hsa-miR-143-3p 0 0 1
chr17:50196625|50197766 hsa-miR-186-5p 0 0 1
chr17:50196625|50197766 hsa-miR-186-3p 0 0 1
chr17:50196625|50197766 hsa-miR-206 0 0 1
chr17:50196625|50197766 hsa-miR-370-5p 0 0 1
chr17:50196625|50197766 hsa-miR-370-3p 0 0 1
chr17:50196625|50197766 hsa-miR-611 0 0 1
chr17:50196625|50197766 hsa-miR-613 0 0 1
chr17:50196625|50197766 hsa-miR-620 0 0 1
chr17:50196625|50197766 hsa-miR-1266-5p 0 0 1
chr17:50196625|50197766 hsa-miR-1266-3p 0 0 1
chr17:50196625|50197766 hsa-miR-1270 1 1 1
chr17:50196625|50197766 hsa-miR-140-5p 0 0 1
chr17:50196625|50197766 hsa-miR-490-3p 0 0 1
chr17:50196625|50197766 hsa-miR-361-3p 0 1 1
chr17:50196625|50197766 hsa-miR-1207-3p 0 1 1
chr17:50196625|50197766 hsa-miR-331-3p 0 0 1
chr17:50196625|50197766 hsa-miR-875-3p 0 1 1
chr17:50196625|50197766 hsa-miR-151-5p 0 0 1
chr17:50196625|50197766 hsa-miR-138 0 0 1
chr17:50196625|50197766 hsa-miR-1 0 0 1
chr17:50196625|50197766 hsa-miR-608 1 0 0
chr17:50196625|50197766 hsa-miR-658 1 0 0
chr17:50196625|50197766 hsa-miR-1193 0 1 0
chr17:50196625|50197766 hsa-miR-3196 1 0 0
chr17:50196625|50197766 hsa-miR-3907 1 1 0
chr17:50196625|50197766 hsa-miR-4462 1 1 0
chr17:50196625|50197766 hsa-miR-2392 1 1 0
chr17:50196625|50197766 hsa-miR-4658 1 0 0
chr17:50196625|50197766 hsa-miR-4688 1 0 0
chr17:50196625|50197766 hsa-miR-4689 1 0 0
chr17:50196625|50197766 hsa-miR-4784 1 0 0
chr17:50196625|50197766 hsa-miR-5194 1 0 0
chr17:50196625|50197766 hsa-miR-5739 1 0 0
chr17:50196625|50197766 hsa-miR-6088 1 1 0
chr17:50196625|50197766 hsa-miR-7515 1 0 0
chr17:50196625|50197766 hsa-miR-8080 1 0 0
chr17:50196625|50197766 hsa-miR-12115 1 1 0
chr17:50196625|50197766 hsa-miR-12127 1 1 0
chr17:50196625|50197766 hsa-miR-211-3p 1 0 0
chr17:50196625|50197766 hsa-miR-6734-5p 1 1 0
chr17:50196625|50197766 hsa-miR-504-3p 1 0 0
chr17:50196625|50197766 hsa-miR-4726-3p 0 1 0
chr17:50196625|50197766 hsa-miR-671-5p 1 0 0
chr17:50196625|50197766 hsa-miR-6894-5p 1 0 0
chr17:50196625|50197766 hsa-miR-4708-5p 0 1 0
chr17:50196625|50197766 hsa-miR-6799-5p 1 0 0
chr17:50196625|50197766 hsa-miR-6728-5p 1 1 0
chr17:50196625|50197766 hsa-miR-5187-5p 1 0 0
chr17:50196625|50197766 hsa-miR-6089 1 0 0
chr17:50196625|50197766 hsa-miR-6741-5p 1 0 0
chr17:50196625|50197766 hsa-miR-8069 1 0 0
chr17:50196625|50197766 hsa-miR-7845-5p 1 1 0
chr17:50196625|50197766 hsa-miR-3663-5p 1 0 0
chr17:50196625|50197766 hsa-miR-6760-5p 0 1 0
chr17:50196625|50197766 hsa-miR-6810-5p 1 0 0
chr17:50196625|50197766 hsa-miR-5006-5p 0 1 0
chr17:50196625|50197766 hsa-miR-939-3p 1 1 0
chr17:50196625|50197766 hsa-miR-1226-5p 1 0 0
chr17:50196625|50197766 hsa-miR-193b-5p 1 0 0
chr17:50196625|50197766 hsa-miR-3677-3p 1 0 0
chr17:50196625|50197766 hsa-miR-4713-3p 1 0 0
chr17:50196625|50197766 hsa-miR-6847-5p 1 0 0
chr17:50196625|50197766 hsa-miR-3202 0 1 0
chr17:50196625|50197766 hsa-miR-149-3p 1 0 0
chr17:50196625|50197766 hsa-miR-6892-5p 1 0 0
chr17:50196625|50197766 hsa-miR-6864-5p 1 1 0
chr17:50196625|50197766 hsa-miR-664b-5p 1 0 0
chr17:50196625|50197766 hsa-miR-7152-3p 0 1 0
chr17:50196625|50197766 hsa-miR-6778-3p 0 1 0
chr17:50196625|50197766 hsa-miR-6814-5p 0 1 0
chr17:50196625|50197766 hsa-miR-518c-5p 0 1 0
chr17:50196625|50197766 hsa-miR-431-3p 1 0 0
chr17:50196625|50197766 hsa-miR-1343-5p 1 0 0
chr17:50196625|50197766 hsa-miR-6737-5p 1 0 0
chr17:50196625|50197766 hsa-miR-6743-5p 1 0 0
chr17:50196625|50197766 hsa-miR-6754-5p 1 0 0
chr17:50196625|50197766 hsa-miR-6756-5p 1 0 0
chr17:50196625|50197766 hsa-miR-6803-5p 1 0 0
chr17:50196625|50197766 hsa-miR-6819-5p 1 0 0
chr17:50196625|50197766 hsa-miR-6851-5p 1 0 0
chr17:50196625|50197766 hsa-miR-1249-5p 1 0 0
chr17:50196625|50197766 hsa-miR-6763-5p 1 0 0
chr17:50196625|50197766 hsa-miR-6797-5p 1 0 0
chr17:50196625|50197766 hsa-miR-7111-5p 1 0 0
chr17:50196625|50197766 hsa-miR-5196-5p 1 0 0
chr17:50196625|50197766 hsa-miR-4649-5p 1 0 0
chr17:50196625|50197766 hsa-miR-4749-5p 1 0 0
chr17:50196625|50197766 hsa-miR-939-5p 1 1 0
chr17:50196625|50197766 hsa-miR-4665-5p 1 0 0
chr17:50196625|50197766 hsa-miR-6791-3p 0 1 0
chr17:50196625|50197766 hsa-miR-4646-5p 1 1 0
chr17:50196625|50197766 hsa-miR-6891-5p 1 0 0
chr17:50196625|50197766 hsa-miR-6724-5p 1 0 0
chr17:50196625|50197766 hsa-miR-4757-5p 0 1 0
chr17:50196625|50197766 hsa-miR-6829-3p 0 1 0
chr17:50196625|50197766 hsa-miR-6783-3p 0 1 0
chr17:50196625|50197766 hsa-miR-323b-5p 1 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:50196625|50197766
ORF Type ORF1
Protein Length 38
Nucleotide Length 114
Protein Sequence MFRAILEHPEAQEAHAHQDDQVFQLPHHLHSFQGDLGD
Nucleotide Sequence CTGTTCCGGGCAATCCTCGAGCACCCTGAGGCCCAGGAGGCCCACGCTCACCAGGACGACCAGGTTTTCCAGCTTCCCCATCATCTCCATTCTTTCCAGGGGGACCTGGGGGAC
CircID chr17:50196625|50197766
ORF Type ORF2
Protein Length 29
Nucleotide Length 87
Protein Sequence MRPRRPTLTRTTRFSSFPIISILSRGTWG
Nucleotide Sequence CTGAGGCCCAGGAGGCCCACGCTCACCAGGACGACCAGGTTTTCCAGCTTCCCCATCATCTCCATTCTTTCCAGGGGGACCTGGGGG
CircID chr17:50196625|50197766
ORF Type ORF3
Protein Length 27
Nucleotide Length 84
Protein Sequence MAPSKPLKPLCPFIPGRPAVPGNPRAP
Nucleotide Sequence TTGGCACCATCCAAACCACTGAAACCTCTGTGTCCCTTCATTCCAGGGAGGCCAGCTGTTCCGGGCAATCCTCGAGCACCCTGA
CircID chr17:50196625|50197766
ORF Type ORF4
Protein Length 38
Nucleotide Length 117
Protein Sequence MERMEMMGKLENLVVLVSVGLLGLRVLEDCPEQLASLE
Nucleotide Sequence CTGGAAAGAATGGAGATGATGGGGAAGCTGGAAAACCTGGTCGTCCTGGTGAGCGTGGGCCTCCTGGGCCTCAGGGTGCTCGAGGATTGCCCGGAACAGCTGGCCTCCCTGGAATGA
CircID chr17:50196625|50197766
ORF Type ORF5
Protein Length 29
Nucleotide Length 87
Protein Sequence MPGTAGLPGMKGHRGFSGLDGAKGDAGPA
Nucleotide Sequence TTGCCCGGAACAGCTGGCCTCCCTGGAATGAAGGGACACAGAGGTTTCAGTGGTTTGGATGGTGCCAAGGGAGATGCTGGTCCTGCT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab