CircRNA Information

General Information
circRNA Basic Information
CircID chr17:50196634|50197766
Strand -
CircType exon
Host Gene ENSG00000108821.12;
Algorism CIRI2;
Sequence CAGCATCTCCCTTGGCACCATCCAAACCACTGAAACCTCTGTGTCCCTTCATTCCAGGGAGGCCAGCTGTTCCGGGCAATCCTCGAGCACCCTGGAGAGAGATGAAGAAGACAAGGAAGGGCCATTAGAACACATCACTGTGGACCCAGCTCCTAAATGAAGCCCAAGTGCAGTGAAGCCCAGGTTCAGCCACAGCCCCCTGCTCACCTGAGGCCCAGGAGGCCCACGCTCACCAGGACGACCAGGTTTTCCAGCTTCCCCATCATCTCCATTCTTTCCAGGGGGACCTGGGGGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:50196634|50197766 hsa-miR-143-5p 0 0 1
chr17:50196634|50197766 hsa-miR-143-3p 0 0 1
chr17:50196634|50197766 hsa-miR-186-5p 0 0 1
chr17:50196634|50197766 hsa-miR-186-3p 0 0 1
chr17:50196634|50197766 hsa-miR-206 0 0 1
chr17:50196634|50197766 hsa-miR-328-5p 0 0 1
chr17:50196634|50197766 hsa-miR-328-3p 0 0 1
chr17:50196634|50197766 hsa-miR-511-5p 0 0 1
chr17:50196634|50197766 hsa-miR-511-3p 0 0 1
chr17:50196634|50197766 hsa-miR-579-5p 0 0 1
chr17:50196634|50197766 hsa-miR-579-3p 0 0 1
chr17:50196634|50197766 hsa-miR-611 0 0 1
chr17:50196634|50197766 hsa-miR-613 0 0 1
chr17:50196634|50197766 hsa-miR-620 0 0 1
chr17:50196634|50197766 hsa-miR-635 0 0 1
chr17:50196634|50197766 hsa-miR-651-5p 0 0 1
chr17:50196634|50197766 hsa-miR-651-3p 0 0 1
chr17:50196634|50197766 hsa-miR-766-5p 0 0 1
chr17:50196634|50197766 hsa-miR-766-3p 0 0 1
chr17:50196634|50197766 hsa-miR-708-5p 0 0 1
chr17:50196634|50197766 hsa-miR-708-3p 0 0 1
chr17:50196634|50197766 hsa-miR-1291 0 0 1
chr17:50196634|50197766 hsa-miR-1270 1 1 1
chr17:50196634|50197766 hsa-miR-140-5p 0 0 1
chr17:50196634|50197766 hsa-miR-125a-3p 0 0 1
chr17:50196634|50197766 hsa-miR-490-3p 0 0 1
chr17:50196634|50197766 hsa-miR-361-3p 0 1 1
chr17:50196634|50197766 hsa-miR-28-5p 0 0 1
chr17:50196634|50197766 hsa-miR-502-5p 0 0 1
chr17:50196634|50197766 hsa-miR-1207-3p 0 1 1
chr17:50196634|50197766 hsa-miR-331-3p 0 0 1
chr17:50196634|50197766 hsa-miR-875-3p 0 1 1
chr17:50196634|50197766 hsa-miR-576-5p 0 0 1
chr17:50196634|50197766 hsa-miR-151-5p 0 0 1
chr17:50196634|50197766 hsa-miR-128 0 0 1
chr17:50196634|50197766 hsa-miR-1 0 0 1
chr17:50196634|50197766 hsa-miR-608 1 0 0
chr17:50196634|50197766 hsa-miR-612 1 0 0
chr17:50196634|50197766 hsa-miR-637 1 0 0
chr17:50196634|50197766 hsa-miR-638 1 0 0
chr17:50196634|50197766 hsa-miR-661 1 1 0
chr17:50196634|50197766 hsa-miR-762 1 0 0
chr17:50196634|50197766 hsa-miR-663b 1 0 0
chr17:50196634|50197766 hsa-miR-1293 1 0 0
chr17:50196634|50197766 hsa-miR-2861 1 0 0
chr17:50196634|50197766 hsa-miR-3131 1 0 0
chr17:50196634|50197766 hsa-miR-1193 0 1 0
chr17:50196634|50197766 hsa-miR-3196 1 0 0
chr17:50196634|50197766 hsa-miR-4281 1 0 0
chr17:50196634|50197766 hsa-miR-3907 0 1 0
chr17:50196634|50197766 hsa-miR-3937 1 0 0
chr17:50196634|50197766 hsa-miR-4462 1 1 0
chr17:50196634|50197766 hsa-miR-4469 0 1 0
chr17:50196634|50197766 hsa-miR-2392 1 1 0
chr17:50196634|50197766 hsa-miR-4508 1 0 0
chr17:50196634|50197766 hsa-miR-1587 1 0 0
chr17:50196634|50197766 hsa-miR-4539 1 1 0
chr17:50196634|50197766 hsa-miR-4675 0 1 0
chr17:50196634|50197766 hsa-miR-4688 1 0 0
chr17:50196634|50197766 hsa-miR-4706 1 0 0
chr17:50196634|50197766 hsa-miR-4784 1 0 0
chr17:50196634|50197766 hsa-miR-5194 1 0 0
chr17:50196634|50197766 hsa-miR-5698 1 0 0
chr17:50196634|50197766 hsa-miR-5739 1 0 0
chr17:50196634|50197766 hsa-miR-6085 1 0 0
chr17:50196634|50197766 hsa-miR-6088 1 1 0
chr17:50196634|50197766 hsa-miR-6860 1 0 0
chr17:50196634|50197766 hsa-miR-7974 0 1 0
chr17:50196634|50197766 hsa-miR-8080 1 0 0
chr17:50196634|50197766 hsa-miR-12115 1 1 0
chr17:50196634|50197766 hsa-miR-12127 1 1 0
chr17:50196634|50197766 hsa-miR-211-3p 1 0 0
chr17:50196634|50197766 hsa-miR-370-3p 1 0 0
chr17:50196634|50197766 hsa-miR-6734-5p 1 1 0
chr17:50196634|50197766 hsa-miR-4731-5p 1 0 0
chr17:50196634|50197766 hsa-miR-4726-3p 0 1 0
chr17:50196634|50197766 hsa-miR-671-5p 1 0 0
chr17:50196634|50197766 hsa-miR-6894-5p 1 0 0
chr17:50196634|50197766 hsa-miR-27a-5p 1 0 0
chr17:50196634|50197766 hsa-miR-6799-5p 1 0 0
chr17:50196634|50197766 hsa-miR-6728-5p 1 1 0
chr17:50196634|50197766 hsa-miR-7851-3p 0 1 0
chr17:50196634|50197766 hsa-miR-5187-5p 1 0 0
chr17:50196634|50197766 hsa-miR-6089 1 0 0
chr17:50196634|50197766 hsa-miR-4474-3p 0 1 0
chr17:50196634|50197766 hsa-miR-4677-5p 1 0 0
chr17:50196634|50197766 hsa-miR-191-3p 0 1 0
chr17:50196634|50197766 hsa-miR-8069 1 0 0
chr17:50196634|50197766 hsa-miR-7845-5p 1 1 0
chr17:50196634|50197766 hsa-miR-185-3p 0 1 0
chr17:50196634|50197766 hsa-miR-6829-5p 1 0 0
chr17:50196634|50197766 hsa-miR-6732-5p 1 0 0
chr17:50196634|50197766 hsa-miR-6805-5p 1 1 0
chr17:50196634|50197766 hsa-miR-6798-5p 1 1 0
chr17:50196634|50197766 hsa-miR-3130-3p 1 0 0
chr17:50196634|50197766 hsa-miR-6810-5p 1 0 0
chr17:50196634|50197766 hsa-miR-6740-3p 0 1 0
chr17:50196634|50197766 hsa-miR-6786-5p 1 0 0
chr17:50196634|50197766 hsa-miR-6835-5p 1 0 0
chr17:50196634|50197766 hsa-miR-939-3p 0 1 0
chr17:50196634|50197766 hsa-miR-1226-5p 1 0 0
chr17:50196634|50197766 hsa-miR-193b-5p 1 0 0
chr17:50196634|50197766 hsa-miR-4690-5p 1 0 0
chr17:50196634|50197766 hsa-miR-4713-3p 1 0 0
chr17:50196634|50197766 hsa-miR-6847-5p 1 0 0
chr17:50196634|50197766 hsa-miR-3202 0 1 0
chr17:50196634|50197766 hsa-miR-6800-5p 1 0 0
chr17:50196634|50197766 hsa-miR-6864-5p 0 1 0
chr17:50196634|50197766 hsa-miR-3158-3p 1 0 0
chr17:50196634|50197766 hsa-miR-4778-3p 0 1 0
chr17:50196634|50197766 hsa-miR-6778-3p 0 1 0
chr17:50196634|50197766 hsa-miR-6814-5p 0 1 0
chr17:50196634|50197766 hsa-miR-6837-3p 0 1 0
chr17:50196634|50197766 hsa-miR-216a-3p 0 1 0
chr17:50196634|50197766 hsa-miR-6792-5p 1 0 0
chr17:50196634|50197766 hsa-miR-518c-5p 0 1 0
chr17:50196634|50197766 hsa-miR-431-3p 1 0 0
chr17:50196634|50197766 hsa-miR-1207-5p 1 0 0
chr17:50196634|50197766 hsa-miR-4763-3p 1 1 0
chr17:50196634|50197766 hsa-miR-6870-5p 1 0 0
chr17:50196634|50197766 hsa-miR-1343-5p 1 0 0
chr17:50196634|50197766 hsa-miR-6726-5p 1 1 0
chr17:50196634|50197766 hsa-miR-6737-5p 1 0 0
chr17:50196634|50197766 hsa-miR-6743-5p 1 0 0
chr17:50196634|50197766 hsa-miR-6752-5p 1 0 0
chr17:50196634|50197766 hsa-miR-6754-5p 1 0 0
chr17:50196634|50197766 hsa-miR-6756-5p 1 0 0
chr17:50196634|50197766 hsa-miR-6803-5p 1 0 0
chr17:50196634|50197766 hsa-miR-6813-5p 1 1 0
chr17:50196634|50197766 hsa-miR-6819-5p 1 0 0
chr17:50196634|50197766 hsa-miR-6851-5p 1 0 0
chr17:50196634|50197766 hsa-miR-1249-5p 1 0 0
chr17:50196634|50197766 hsa-miR-6722-3p 1 1 0
chr17:50196634|50197766 hsa-miR-6763-5p 1 0 0
chr17:50196634|50197766 hsa-miR-6774-5p 1 0 0
chr17:50196634|50197766 hsa-miR-7111-5p 1 0 0
chr17:50196634|50197766 hsa-miR-3620-5p 1 1 0
chr17:50196634|50197766 hsa-miR-1237-5p 1 0 0
chr17:50196634|50197766 hsa-miR-1909-3p 1 1 0
chr17:50196634|50197766 hsa-miR-4649-5p 1 0 0
chr17:50196634|50197766 hsa-miR-4725-3p 1 0 0
chr17:50196634|50197766 hsa-miR-6729-5p 1 0 0
chr17:50196634|50197766 hsa-miR-6794-5p 1 0 0
chr17:50196634|50197766 hsa-miR-6846-5p 1 0 0
chr17:50196634|50197766 hsa-miR-6848-5p 1 1 0
chr17:50196634|50197766 hsa-miR-3187-5p 1 0 0
chr17:50196634|50197766 hsa-miR-6885-5p 1 0 0
chr17:50196634|50197766 hsa-miR-939-5p 1 1 0
chr17:50196634|50197766 hsa-miR-6731-5p 1 0 0
chr17:50196634|50197766 hsa-miR-4665-5p 1 0 0
chr17:50196634|50197766 hsa-miR-6791-3p 0 1 0
chr17:50196634|50197766 hsa-miR-4646-5p 1 1 0
chr17:50196634|50197766 hsa-miR-4747-5p 1 0 0
chr17:50196634|50197766 hsa-miR-6891-5p 1 0 0
chr17:50196634|50197766 hsa-miR-6724-5p 1 0 0
chr17:50196634|50197766 hsa-miR-4757-5p 0 1 0
chr17:50196634|50197766 hsa-miR-6829-3p 0 1 0
chr17:50196634|50197766 hsa-miR-6783-3p 1 1 0
chr17:50196634|50197766 hsa-miR-323b-5p 1 1 0
chr17:50196634|50197766 hsa-miR-1912-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:50196634|50197766
ORF Type ORF1
Protein Length 46
Nucleotide Length 138
Protein Sequence MKPKCSEAQVQPQPPAHLRPRRPTLTRTTRFSSFPIISILSRGTWG
Nucleotide Sequence ATGAAGCCCAAGTGCAGTGAAGCCCAGGTTCAGCCACAGCCCCCTGCTCACCTGAGGCCCAGGAGGCCCACGCTCACCAGGACGACCAGGTTTTCCAGCTTCCCCATCATCTCCATTCTTTCCAGGGGGACCTGGGGG
CircID chr17:50196634|50197766
ORF Type ORF2
Protein Length 38
Nucleotide Length 117
Protein Sequence MAPSKPLKPLCPFIPGRPAVPGNPRAPWREMKKTRKGH
Nucleotide Sequence TTGGCACCATCCAAACCACTGAAACCTCTGTGTCCCTTCATTCCAGGGAGGCCAGCTGTTCCGGGCAATCCTCGAGCACCCTGGAGAGAGATGAAGAAGACAAGGAAGGGCCATTAG
CircID chr17:50196634|50197766
ORF Type ORF3
Protein Length 25
Nucleotide Length 78
Protein Sequence MERMEMMGKLENLVVLVSVGLLGLR
Nucleotide Sequence CTGGAAAGAATGGAGATGATGGGGAAGCTGGAAAACCTGGTCGTCCTGGTGAGCGTGGGCCTCCTGGGCCTCAGGTGA
CircID chr17:50196634|50197766
ORF Type ORF4
Protein Length 41
Nucleotide Length 123
Protein Sequence MALPCLLHLSPGCSRIARNSWPPWNEGTQRFQWFGWCQGRC
Nucleotide Sequence ATGGCCCTTCCTTGTCTTCTTCATCTCTCTCCAGGGTGCTCGAGGATTGCCCGGAACAGCTGGCCTCCCTGGAATGAAGGGACACAGAGGTTTCAGTGGTTTGGATGGTGCCAAGGGAGATGC
CircID chr17:50196634|50197766
ORF Type ORF5
Protein Length 26
Nucleotide Length 78
Protein Sequence MPGTAGLPGMKGHRGFSGLDGAKGDA
Nucleotide Sequence TTGCCCGGAACAGCTGGCCTCCCTGGAATGAAGGGACACAGAGGTTTCAGTGGTTTGGATGGTGCCAAGGGAGATGCT
CircID chr17:50196634|50197766
ORF Type ORF6
Protein Length 48
Nucleotide Length 147
Protein Sequence MWLNLGFTALGLHLGAGSTVMCSNGPSLSSSSLSRVLEDCPEQLASLE
Nucleotide Sequence CTGTGGCTGAACCTGGGCTTCACTGCACTTGGGCTTCATTTAGGAGCTGGGTCCACAGTGATGTGTTCTAATGGCCCTTCCTTGTCTTCTTCATCTCTCTCCAGGGTGCTCGAGGATTGCCCGGAACAGCTGGCCTCCCTGGAATGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab