CircRNA Information

General Information
circRNA Basic Information
CircID chr17:50484471|50484839
Strand -
CircType exon
Host Gene ENSG00000136444.8;
Algorism CIRI2;
Sequence CCTGTGGGATGTGTTTGGAGCGAACAAGGAGGTGCAGGAGCTGCTGGAGCGGGGCCTACTGCAGCTGGATCACAGGTGTGTTGGGGGGTGCCGGGCAGAGGGGGCTGAGGCATACCAGGGAGCCCTGACTACAGCTCTCCACAGACCCAGGAGAAGTGAGAAAGACTGACTGGTAAGGCGGGACCTGCGGGTGCTGGGAGCTCGGCCCTGCTGGGTGATGGGCTTGAAATTGGTAAGATGAAGTAGTCACCTTCAGGCCTCTTGGTTTTCCAGGGGTCTTCGGTGTTCCTGGGAGGGTCTGGCTGTGCTGGACTCTCTCTTGCTGACCCTCCTGCCTCAGCTCCAAGAAGCCTGGCAGCAGAGAACCCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:50484471|50484839 hsa-miR-214-5p 0 0 1
chr17:50484471|50484839 hsa-miR-214-3p 0 0 1
chr17:50484471|50484839 hsa-miR-185-5p 0 0 1
chr17:50484471|50484839 hsa-miR-185-3p 0 0 1
chr17:50484471|50484839 hsa-miR-375-5p 0 0 1
chr17:50484471|50484839 hsa-miR-375-3p 0 0 1
chr17:50484471|50484839 hsa-miR-493-5p 0 0 1
chr17:50484471|50484839 hsa-miR-493-3p 0 0 1
chr17:50484471|50484839 hsa-miR-432-5p 0 0 1
chr17:50484471|50484839 hsa-miR-432-3p 0 0 1
chr17:50484471|50484839 hsa-miR-498-5p 0 0 1
chr17:50484471|50484839 hsa-miR-498-3p 0 0 1
chr17:50484471|50484839 hsa-miR-545-5p 0 0 1
chr17:50484471|50484839 hsa-miR-545-3p 0 0 1
chr17:50484471|50484839 hsa-miR-622 0 0 1
chr17:50484471|50484839 hsa-miR-640 0 0 1
chr17:50484471|50484839 hsa-miR-646 0 0 1
chr17:50484471|50484839 hsa-miR-766-5p 0 0 1
chr17:50484471|50484839 hsa-miR-766-3p 0 0 1
chr17:50484471|50484839 hsa-miR-873-5p 0 0 1
chr17:50484471|50484839 hsa-miR-873-3p 0 0 1
chr17:50484471|50484839 hsa-miR-940 1 0 1
chr17:50484471|50484839 hsa-miR-1228-5p 0 0 1
chr17:50484471|50484839 hsa-miR-1228-3p 0 0 1
chr17:50484471|50484839 hsa-miR-1229-5p 0 0 1
chr17:50484471|50484839 hsa-miR-1229-3p 0 0 1
chr17:50484471|50484839 hsa-miR-1827 0 0 1
chr17:50484471|50484839 hsa-miR-193a-5p 0 0 1
chr17:50484471|50484839 hsa-miR-532-5p 0 0 1
chr17:50484471|50484839 hsa-miR-331-3p 0 0 1
chr17:50484471|50484839 hsa-miR-188-3p 0 0 1
chr17:50484471|50484839 hsa-miR-875-3p 0 1 1
chr17:50484471|50484839 hsa-miR-338-3p 0 0 1
chr17:50484471|50484839 hsa-miR-324-3p 0 0 1
chr17:50484471|50484839 hsa-miR-362-3p 0 1 1
chr17:50484471|50484839 hsa-miR-329 0 0 1
chr17:50484471|50484839 hsa-miR-611 1 1 0
chr17:50484471|50484839 hsa-miR-761 0 1 0
chr17:50484471|50484839 hsa-miR-665 1 1 0
chr17:50484471|50484839 hsa-miR-920 0 1 0
chr17:50484471|50484839 hsa-miR-1182 0 1 0
chr17:50484471|50484839 hsa-miR-1470 1 0 0
chr17:50484471|50484839 hsa-miR-1913 1 0 0
chr17:50484471|50484839 hsa-miR-1976 1 1 0
chr17:50484471|50484839 hsa-miR-2117 0 1 0
chr17:50484471|50484839 hsa-miR-718 1 0 0
chr17:50484471|50484839 hsa-miR-4298 1 0 0
chr17:50484471|50484839 hsa-miR-4313 1 0 0
chr17:50484471|50484839 hsa-miR-4530 0 1 0
chr17:50484471|50484839 hsa-miR-4656 1 1 0
chr17:50484471|50484839 hsa-miR-4663 1 1 0
chr17:50484471|50484839 hsa-miR-451b 0 1 0
chr17:50484471|50484839 hsa-miR-4739 1 0 0
chr17:50484471|50484839 hsa-miR-4779 0 1 0
chr17:50484471|50484839 hsa-miR-5193 0 1 0
chr17:50484471|50484839 hsa-miR-6071 0 1 0
chr17:50484471|50484839 hsa-miR-6132 0 1 0
chr17:50484471|50484839 hsa-miR-7977 0 1 0
chr17:50484471|50484839 hsa-miR-9899 1 0 0
chr17:50484471|50484839 hsa-miR-12120 0 1 0
chr17:50484471|50484839 hsa-miR-17-3p 0 1 0
chr17:50484471|50484839 hsa-miR-1247-3p 0 1 0
chr17:50484471|50484839 hsa-miR-4665-3p 1 0 0
chr17:50484471|50484839 hsa-miR-6765-5p 1 0 0
chr17:50484471|50484839 hsa-miR-6836-3p 1 0 0
chr17:50484471|50484839 hsa-miR-6861-5p 1 0 0
chr17:50484471|50484839 hsa-miR-6720-5p 1 0 0
chr17:50484471|50484839 hsa-miR-7114-5p 0 1 0
chr17:50484471|50484839 hsa-miR-6089 1 0 0
chr17:50484471|50484839 hsa-miR-4722-5p 1 1 0
chr17:50484471|50484839 hsa-miR-4755-3p 0 1 0
chr17:50484471|50484839 hsa-miR-1178-5p 0 1 0
chr17:50484471|50484839 hsa-miR-138-1-3p 1 1 0
chr17:50484471|50484839 hsa-miR-6787-3p 1 0 0
chr17:50484471|50484839 hsa-miR-3180-3p 1 0 0
chr17:50484471|50484839 hsa-miR-2467-3p 1 0 0
chr17:50484471|50484839 hsa-miR-3667-5p 0 1 0
chr17:50484471|50484839 hsa-miR-6874-5p 0 1 0
chr17:50484471|50484839 hsa-miR-4633-5p 0 1 0
chr17:50484471|50484839 hsa-miR-6728-3p 1 1 0
chr17:50484471|50484839 hsa-miR-532-3p 1 0 0
chr17:50484471|50484839 hsa-miR-939-3p 1 0 0
chr17:50484471|50484839 hsa-miR-4793-5p 1 0 0
chr17:50484471|50484839 hsa-miR-1908-3p 1 0 0
chr17:50484471|50484839 hsa-miR-3127-5p 0 1 0
chr17:50484471|50484839 hsa-miR-7113-3p 1 1 0
chr17:50484471|50484839 hsa-miR-6830-3p 0 1 0
chr17:50484471|50484839 hsa-miR-6736-3p 0 1 0
chr17:50484471|50484839 hsa-miR-6789-5p 1 0 0
chr17:50484471|50484839 hsa-miR-6769a-3p 1 0 0
chr17:50484471|50484839 hsa-miR-585-5p 0 1 0
chr17:50484471|50484839 hsa-miR-1237-3p 1 1 0
chr17:50484471|50484839 hsa-let-7e-5p 1 0 0
chr17:50484471|50484839 hsa-miR-7106-3p 0 1 0
chr17:50484471|50484839 hsa-miR-4687-5p 1 1 0
chr17:50484471|50484839 hsa-miR-6804-3p 1 0 0
chr17:50484471|50484839 hsa-miR-6793-3p 1 0 0
chr17:50484471|50484839 hsa-miR-597-3p 0 1 0
chr17:50484471|50484839 hsa-miR-6778-3p 1 0 0
chr17:50484471|50484839 hsa-miR-744-5p 1 0 0
chr17:50484471|50484839 hsa-miR-4774-5p 0 1 0
chr17:50484471|50484839 hsa-miR-2276-5p 0 1 0
chr17:50484471|50484839 hsa-miR-6871-3p 0 1 0
chr17:50484471|50484839 hsa-miR-1914-5p 1 0 0
chr17:50484471|50484839 hsa-miR-5088-3p 1 1 0
chr17:50484471|50484839 hsa-miR-4749-3p 1 0 0
chr17:50484471|50484839 hsa-miR-20b-3p 0 1 0
chr17:50484471|50484839 hsa-miR-6798-3p 0 1 0
chr17:50484471|50484839 hsa-miR-6726-5p 1 1 0
chr17:50484471|50484839 hsa-miR-6743-5p 1 0 0
chr17:50484471|50484839 hsa-miR-6813-5p 1 0 0
chr17:50484471|50484839 hsa-miR-6774-5p 1 0 0
chr17:50484471|50484839 hsa-miR-6808-5p 0 1 0
chr17:50484471|50484839 hsa-miR-6879-5p 1 0 0
chr17:50484471|50484839 hsa-miR-3127-3p 1 0 0
chr17:50484471|50484839 hsa-miR-939-5p 1 1 0
chr17:50484471|50484839 hsa-miR-5008-3p 1 0 0
chr17:50484471|50484839 hsa-miR-6791-3p 1 1 0
chr17:50484471|50484839 hsa-miR-10398-5p 0 1 0
chr17:50484471|50484839 hsa-miR-6753-3p 1 0 0
chr17:50484471|50484839 hsa-miR-6805-3p 1 0 0
chr17:50484471|50484839 hsa-miR-10392-3p 1 1 0
chr17:50484471|50484839 hsa-miR-4723-3p 1 0 0
chr17:50484471|50484839 hsa-miR-6769b-3p 1 1 0
chr17:50484471|50484839 hsa-miR-10394-5p 1 0 0
chr17:50484471|50484839 hsa-miR-200c-5p 0 1 0
chr17:50484471|50484839 hsa-miR-329-3p 0 1 0
chr17:50484471|50484839 hsa-miR-99a-5p 0 1 0
chr17:50484471|50484839 hsa-miR-4712-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:50484471|50484839
ORF Type ORF1
Protein Length 26
Nucleotide Length 81
Protein Sequence MTGKAGPAGAGSSALLGDGLEIGKMK
Nucleotide Sequence CTGACTGGTAAGGCGGGACCTGCGGGTGCTGGGAGCTCGGCCCTGCTGGGTGATGGGCTTGAAATTGGTAAGATGAAGTAG
CircID chr17:50484471|50484839
ORF Type ORF2
Protein Length 36
Nucleotide Length 108
Protein Sequence MVFQGSSVFLGGSGCAGLSLADPPASAPRSLAAENP
Nucleotide Sequence TTGGTTTTCCAGGGGTCTTCGGTGTTCCTGGGAGGGTCTGGCTGTGCTGGACTCTCTCTTGCTGACCCTCCTGCCTCAGCTCCAAGAAGCCTGGCAGCAGAGAACCCC
CircID chr17:50484471|50484839
ORF Type ORF3
Protein Length 55
Nucleotide Length 168
Protein Sequence LWDVFGANKEVQELLERGLLQLDHRCVGGCRAEGAEAYQGALTTALHRPRRSEKD
Nucleotide Sequence CTGTGGGATGTGTTTGGAGCGAACAAGGAGGTGCAGGAGCTGCTGGAGCGGGGCCTACTGCAGCTGGATCACAGGTGTGTTGGGGGGTGCCGGGCAGAGGGGGCTGAGGCATACCAGGGAGCCCTGACTACAGCTCTCCACAGACCCAGGAGAAGTGAGAAAGACTGA
CircID chr17:50484471|50484839
ORF Type ORF4
Protein Length 39
Nucleotide Length 120
Protein Sequence MCLERTRRCRSCWSGAYCSWITGVLGGAGQRGLRHTREP
Nucleotide Sequence ATGTGTTTGGAGCGAACAAGGAGGTGCAGGAGCTGCTGGAGCGGGGCCTACTGCAGCTGGATCACAGGTGTGTTGGGGGGTGCCGGGCAGAGGGGGCTGAGGCATACCAGGGAGCCCTGA
CircID chr17:50484471|50484839
ORF Type ORF5
Protein Length 26
Nucleotide Length 81
Protein Sequence MGLWRAVVRAPWYASAPSARHPPTHL
Nucleotide Sequence CTGGGTCTGTGGAGAGCTGTAGTCAGGGCTCCCTGGTATGCCTCAGCCCCCTCTGCCCGGCACCCCCCAACACACCTGTGA
CircID chr17:50484471|50484839
ORF Type ORF6
Protein Length 37
Nucleotide Length 111
Protein Sequence MPQPPLPGTPQHTCDPAAVGPAPAAPAPPCSLQTHPT
Nucleotide Sequence ATGCCTCAGCCCCCTCTGCCCGGCACCCCCCAACACACCTGTGATCCAGCTGCAGTAGGCCCCGCTCCAGCAGCTCCTGCACCTCCTTGTTCGCTCCAAACACATCCCACA
CircID chr17:50484471|50484839
ORF Type ORF7
Protein Length 101
Nucleotide Length 306
Protein Sequence MLPGFLELRQEGQQERVQHSQTLPGTPKTPGKPRGLKVTTSSYQFQAHHPAGPSSQHPQVPPYQSVFLTSPGSVESCSQGSLVCLSPLCPAPPNTPVIQLQ
Nucleotide Sequence CTGCTGCCAGGCTTCTTGGAGCTGAGGCAGGAGGGTCAGCAAGAGAGAGTCCAGCACAGCCAGACCCTCCCAGGAACACCGAAGACCCCTGGAAAACCAAGAGGCCTGAAGGTGACTACTTCATCTTACCAATTTCAAGCCCATCACCCAGCAGGGCCGAGCTCCCAGCACCCGCAGGTCCCGCCTTACCAGTCAGTCTTTCTCACTTCTCCTGGGTCTGTGGAGAGCTGTAGTCAGGGCTCCCTGGTATGCCTCAGCCCCCTCTGCCCGGCACCCCCCAACACACCTGTGATCCAGCTGCAGTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab