CircRNA Information

General Information
circRNA Basic Information
CircID chr17:50675392|50675691
Strand -
CircType exon
Host Gene ENSG00000108846.14;
Algorism CIRI2;
Sequence TGCTGATTGAAGACACACTCAGCAACCACACGGATCTGACAGACAATGATCCAGTCACCTATGTGGTCCAGAAGCAGTTTATGAGGTGAGTTCCTGAGAGCTCCCAGCCCTCCCGGAGGCTGTATCAGGCCTCCCCAGGCCCTGCCAGATGGGGTGCAGGTTTCTCCCTGACACTCCCAGCCTCTGTCCTGGGGGGTGCTTGAGGCCCCCTCCCTGGGCCTGACCAGCTGCCTCCACAGACAGCTGAGTGCCCTGTCCTCAGATGGGGAGGGACAGGGTCGGCCTGTACCCCGGAGGCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:50675392|50675691 hsa-miR-10a-5p 0 0 1
chr17:50675392|50675691 hsa-miR-10a-3p 0 0 1
chr17:50675392|50675691 hsa-miR-10b-5p 0 0 1
chr17:50675392|50675691 hsa-miR-10b-3p 0 0 1
chr17:50675392|50675691 hsa-miR-122-5p 0 0 1
chr17:50675392|50675691 hsa-miR-122-3p 0 0 1
chr17:50675392|50675691 hsa-miR-134-5p 0 0 1
chr17:50675392|50675691 hsa-miR-134-3p 0 0 1
chr17:50675392|50675691 hsa-miR-422a 0 0 1
chr17:50675392|50675691 hsa-miR-504-5p 0 0 1
chr17:50675392|50675691 hsa-miR-504-3p 0 0 1
chr17:50675392|50675691 hsa-miR-626 0 0 1
chr17:50675392|50675691 hsa-miR-632 0 0 1
chr17:50675392|50675691 hsa-miR-650 0 1 1
chr17:50675392|50675691 hsa-miR-661 0 0 1
chr17:50675392|50675691 hsa-miR-873-5p 0 0 1
chr17:50675392|50675691 hsa-miR-873-3p 0 0 1
chr17:50675392|50675691 hsa-miR-920 0 0 1
chr17:50675392|50675691 hsa-miR-939-5p 0 0 1
chr17:50675392|50675691 hsa-miR-939-3p 0 0 1
chr17:50675392|50675691 hsa-miR-1231 0 0 1
chr17:50675392|50675691 hsa-miR-1299 0 0 1
chr17:50675392|50675691 hsa-miR-1243 0 0 1
chr17:50675392|50675691 hsa-miR-548g-5p 0 0 1
chr17:50675392|50675691 hsa-miR-548g-3p 0 0 1
chr17:50675392|50675691 hsa-miR-1266-5p 0 0 1
chr17:50675392|50675691 hsa-miR-1266-3p 0 0 1
chr17:50675392|50675691 hsa-miR-1321 0 0 1
chr17:50675392|50675691 hsa-miR-1827 0 0 1
chr17:50675392|50675691 hsa-miR-512-5p 0 1 1
chr17:50675392|50675691 hsa-miR-1224-5p 0 0 1
chr17:50675392|50675691 hsa-miR-485-5p 0 1 1
chr17:50675392|50675691 hsa-miR-339-5p 0 1 1
chr17:50675392|50675691 hsa-miR-574-5p 0 1 1
chr17:50675392|50675691 hsa-miR-361-3p 0 1 1
chr17:50675392|50675691 hsa-miR-1207-3p 0 0 1
chr17:50675392|50675691 hsa-miR-628-5p 0 0 1
chr17:50675392|50675691 hsa-miR-1207-5p 1 1 1
chr17:50675392|50675691 hsa-miR-378 0 0 1
chr17:50675392|50675691 hsa-miR-516b 0 0 1
chr17:50675392|50675691 hsa-miR-1201 0 0 1
chr17:50675392|50675691 hsa-miR-637 1 1 0
chr17:50675392|50675691 hsa-miR-663a 1 0 0
chr17:50675392|50675691 hsa-miR-762 1 0 0
chr17:50675392|50675691 hsa-miR-1182 0 1 0
chr17:50675392|50675691 hsa-miR-2861 0 1 0
chr17:50675392|50675691 hsa-miR-4270 0 1 0
chr17:50675392|50675691 hsa-miR-4421 0 1 0
chr17:50675392|50675691 hsa-miR-4436a 0 1 0
chr17:50675392|50675691 hsa-miR-4441 0 1 0
chr17:50675392|50675691 hsa-miR-4443 0 1 0
chr17:50675392|50675691 hsa-miR-4492 0 1 0
chr17:50675392|50675691 hsa-miR-4497 0 1 0
chr17:50675392|50675691 hsa-miR-4505 0 1 0
chr17:50675392|50675691 hsa-miR-4512 0 1 0
chr17:50675392|50675691 hsa-miR-4739 0 1 0
chr17:50675392|50675691 hsa-miR-4741 1 0 0
chr17:50675392|50675691 hsa-miR-5100 0 1 0
chr17:50675392|50675691 hsa-miR-5682 0 1 0
chr17:50675392|50675691 hsa-miR-5787 1 1 0
chr17:50675392|50675691 hsa-miR-6086 0 1 0
chr17:50675392|50675691 hsa-miR-6131 0 1 0
chr17:50675392|50675691 hsa-miR-6132 0 1 0
chr17:50675392|50675691 hsa-miR-7150 0 1 0
chr17:50675392|50675691 hsa-miR-8077 0 1 0
chr17:50675392|50675691 hsa-miR-8089 1 1 0
chr17:50675392|50675691 hsa-miR-12119 0 1 0
chr17:50675392|50675691 hsa-miR-12128 0 1 0
chr17:50675392|50675691 hsa-miR-150-3p 0 1 0
chr17:50675392|50675691 hsa-miR-4747-3p 1 0 0
chr17:50675392|50675691 hsa-miR-6840-3p 0 1 0
chr17:50675392|50675691 hsa-miR-6765-5p 1 0 0
chr17:50675392|50675691 hsa-miR-7106-5p 1 0 0
chr17:50675392|50675691 hsa-miR-6825-5p 0 1 0
chr17:50675392|50675691 hsa-miR-3663-3p 0 1 0
chr17:50675392|50675691 hsa-miR-7114-5p 0 1 0
chr17:50675392|50675691 hsa-miR-6089 1 0 0
chr17:50675392|50675691 hsa-miR-3192-5p 0 1 0
chr17:50675392|50675691 hsa-miR-6727-5p 1 0 0
chr17:50675392|50675691 hsa-miR-3189-5p 1 1 0
chr17:50675392|50675691 hsa-miR-6787-3p 0 1 0
chr17:50675392|50675691 hsa-miR-4725-5p 0 1 0
chr17:50675392|50675691 hsa-miR-6760-5p 0 1 0
chr17:50675392|50675691 hsa-miR-2467-3p 0 1 0
chr17:50675392|50675691 hsa-miR-6782-5p 1 0 0
chr17:50675392|50675691 hsa-miR-6810-5p 1 1 0
chr17:50675392|50675691 hsa-miR-1226-5p 1 0 0
chr17:50675392|50675691 hsa-miR-6771-5p 1 1 0
chr17:50675392|50675691 hsa-miR-4717-3p 1 1 0
chr17:50675392|50675691 hsa-miR-6749-5p 1 0 0
chr17:50675392|50675691 hsa-miR-324-5p 0 1 0
chr17:50675392|50675691 hsa-miR-4446-3p 0 1 0
chr17:50675392|50675691 hsa-miR-149-3p 1 1 0
chr17:50675392|50675691 hsa-miR-7154-5p 0 1 0
chr17:50675392|50675691 hsa-miR-6800-5p 0 1 0
chr17:50675392|50675691 hsa-miR-6878-5p 0 1 0
chr17:50675392|50675691 hsa-miR-3120-5p 0 1 0
chr17:50675392|50675691 hsa-miR-3200-5p 0 1 0
chr17:50675392|50675691 hsa-miR-5004-5p 0 1 0
chr17:50675392|50675691 hsa-miR-6748-3p 0 1 0
chr17:50675392|50675691 hsa-miR-4750-3p 0 1 0
chr17:50675392|50675691 hsa-miR-6732-3p 0 1 0
chr17:50675392|50675691 hsa-miR-4763-3p 1 1 0
chr17:50675392|50675691 hsa-miR-6775-5p 1 0 0
chr17:50675392|50675691 hsa-miR-1343-5p 1 0 0
chr17:50675392|50675691 hsa-miR-6754-5p 0 1 0
chr17:50675392|50675691 hsa-miR-6813-5p 1 1 0
chr17:50675392|50675691 hsa-miR-7107-5p 1 1 0
chr17:50675392|50675691 hsa-miR-7110-5p 1 1 0
chr17:50675392|50675691 hsa-miR-6722-3p 1 0 0
chr17:50675392|50675691 hsa-miR-6779-5p 1 0 0
chr17:50675392|50675691 hsa-miR-6797-5p 1 0 0
chr17:50675392|50675691 hsa-miR-1915-3p 0 1 0
chr17:50675392|50675691 hsa-miR-3620-5p 1 0 0
chr17:50675392|50675691 hsa-miR-4728-5p 0 1 0
chr17:50675392|50675691 hsa-miR-6836-5p 1 1 0
chr17:50675392|50675691 hsa-miR-10396b-5p 1 0 0
chr17:50675392|50675691 hsa-miR-328-5p 1 1 0
chr17:50675392|50675691 hsa-miR-6848-5p 1 0 0
chr17:50675392|50675691 hsa-miR-6883-5p 0 1 0
chr17:50675392|50675691 hsa-miR-4700-5p 0 1 0
chr17:50675392|50675691 hsa-miR-10398-3p 0 1 0
chr17:50675392|50675691 hsa-miR-6785-5p 0 1 0
chr17:50675392|50675691 hsa-miR-6790-5p 0 1 0
chr17:50675392|50675691 hsa-miR-9851-5p 0 1 0
chr17:50675392|50675691 hsa-miR-6775-3p 0 1 0
chr17:50675392|50675691 hsa-miR-6819-3p 1 0 0
chr17:50675392|50675691 hsa-miR-4756-5p 0 1 0
chr17:50675392|50675691 hsa-miR-6884-5p 0 1 0
chr17:50675392|50675691 hsa-miR-6876-3p 0 1 0
chr17:50675392|50675691 hsa-miR-5699-3p 0 1 0
chr17:50675392|50675691 hsa-miR-26a-5p 0 1 0
chr17:50675392|50675691 hsa-miR-498-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:50675392|50675691
ORF Type ORF1
Protein Length 25
Nucleotide Length 78
Protein Sequence MRAPSPPGGCIRPPQALPDGVQVSP
Nucleotide Sequence CTGAGAGCTCCCAGCCCTCCCGGAGGCTGTATCAGGCCTCCCCAGGCCCTGCCAGATGGGGTGCAGGTTTCTCCCTGA
CircID chr17:50675392|50675691
ORF Type ORF2
Protein Length 39
Nucleotide Length 117
Protein Sequence MSWGVLEAPSLGLTSCLHRQLSALSSDGEGQGRPVPRRH
Nucleotide Sequence CTGTCCTGGGGGGTGCTTGAGGCCCCCTCCCTGGGCCTGACCAGCTGCCTCCACAGACAGCTGAGTGCCCTGTCCTCAGATGGGGAGGGACAGGGTCGGCCTGTACCCCGGAGGCAC
CircID chr17:50675392|50675691
ORF Type ORF3
Protein Length 28
Nucleotide Length 87
Protein Sequence LIEDTLSNHTDLTDNDPVTYVVQKQFMR
Nucleotide Sequence CTGATTGAAGACACACTCAGCAACCACACGGATCTGACAGACAATGATCCAGTCACCTATGTGGTCCAGAAGCAGTTTATGAGGTGA
CircID chr17:50675392|50675691
ORF Type ORF4
Protein Length 27
Nucleotide Length 84
Protein Sequence MYQASPGPARWGAGFSLTLPASVLGGA
Nucleotide Sequence CTGTATCAGGCCTCCCCAGGCCCTGCCAGATGGGGTGCAGGTTTCTCCCTGACACTCCCAGCCTCTGTCCTGGGGGGTGCTTGA
CircID chr17:50675392|50675691
ORF Type ORF5
Protein Length 54
Nucleotide Length 165
Protein Sequence MSVEAAGQAQGGGLKHPPGQRLGVSGRNLHPIWQGLGRPDTASGRAGSSQELTS
Nucleotide Sequence CTGTCTGTGGAGGCAGCTGGTCAGGCCCAGGGAGGGGGCCTCAAGCACCCCCCAGGACAGAGGCTGGGAGTGTCAGGGAGAAACCTGCACCCCATCTGGCAGGGCCTGGGGAGGCCTGATACAGCCTCCGGGAGGGCTGGGAGCTCTCAGGAACTCACCTCATAA
CircID chr17:50675392|50675691
ORF Type ORF6
Protein Length 79
Nucleotide Length 237
Protein Sequence MWRQLVRPREGASSTPQDRGWECQGETCTPSGRAWGGLIQPPGGLGALRNSPHKLLLDHIGDWIIVCQIRVVAECVFNQ
Nucleotide Sequence CTGTGGAGGCAGCTGGTCAGGCCCAGGGAGGGGGCCTCAAGCACCCCCCAGGACAGAGGCTGGGAGTGTCAGGGAGAAACCTGCACCCCATCTGGCAGGGCCTGGGGAGGCCTGATACAGCCTCCGGGAGGGCTGGGAGCTCTCAGGAACTCACCTCATAAACTGCTTCTGGACCACATAGGTGACTGGATCATTGTCTGTCAGATCCGTGTGGTTGCTGAGTGTGTCTTCAATCAG
CircID chr17:50675392|50675691
ORF Type ORF7
Protein Length 45
Nucleotide Length 138
Protein Sequence MRTGHSAVCGGSWSGPGRGPQAPPRTEAGSVREKPAPHLAGPGEA
Nucleotide Sequence CTGAGGACAGGGCACTCAGCTGTCTGTGGAGGCAGCTGGTCAGGCCCAGGGAGGGGGCCTCAAGCACCCCCCAGGACAGAGGCTGGGAGTGTCAGGGAGAAACCTGCACCCCATCTGGCAGGGCCTGGGGAGGCCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab