CircRNA Information

General Information
circRNA Basic Information
CircID chr17:50693542|50693731
Strand -
CircType exon
Host Gene ENSG00000154945.6;
Algorism CIRI2;
Sequence CCACCTCTCACCAGAGACACCAGTCCCTTGCTTGCCTCTGTCGCTAAGCCCAGAACATGCCCTGCAGCTGCTCCTCTGGAGGCCATCTCCCAGCCAGGGGCTCCACTGCTCCACTTTAATTAATCTGGGTGGCTGAAAGTGTTTTAACCCAAGTAACTTAAGACATGAATTAATAGTGAATTTATTTCCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:50693542|50693731 hsa-miR-17-5p 0 0 1
chr17:50693542|50693731 hsa-miR-17-3p 0 0 1
chr17:50693542|50693731 hsa-miR-20a-5p 0 0 1
chr17:50693542|50693731 hsa-miR-20a-3p 0 0 1
chr17:50693542|50693731 hsa-miR-93-5p 0 0 1
chr17:50693542|50693731 hsa-miR-93-3p 0 0 1
chr17:50693542|50693731 hsa-miR-106a-5p 0 0 1
chr17:50693542|50693731 hsa-miR-106a-3p 0 0 1
chr17:50693542|50693731 hsa-miR-106b-5p 0 0 1
chr17:50693542|50693731 hsa-miR-106b-3p 0 0 1
chr17:50693542|50693731 hsa-miR-326 0 0 1
chr17:50693542|50693731 hsa-miR-20b-5p 0 0 1
chr17:50693542|50693731 hsa-miR-20b-3p 0 0 1
chr17:50693542|50693731 hsa-miR-519d-5p 0 0 1
chr17:50693542|50693731 hsa-miR-519d-3p 0 0 1
chr17:50693542|50693731 hsa-miR-593-5p 0 0 1
chr17:50693542|50693731 hsa-miR-593-3p 0 0 1
chr17:50693542|50693731 hsa-miR-612 0 0 1
chr17:50693542|50693731 hsa-miR-646 0 1 1
chr17:50693542|50693731 hsa-miR-890 0 0 1
chr17:50693542|50693731 hsa-miR-1205 0 1 1
chr17:50693542|50693731 hsa-miR-1225-3p 0 1 1
chr17:50693542|50693731 hsa-miR-525-5p 0 1 1
chr17:50693542|50693731 hsa-miR-331-3p 0 0 1
chr17:50693542|50693731 hsa-miR-520a-5p 0 1 1
chr17:50693542|50693731 hsa-miR-330-5p 1 0 1
chr17:50693542|50693731 hsa-miR-1285 0 0 1
chr17:50693542|50693731 hsa-miR-422a 1 0 0
chr17:50693542|50693731 hsa-miR-762 1 0 0
chr17:50693542|50693731 hsa-miR-1183 1 0 0
chr17:50693542|50693731 hsa-miR-1268a 1 0 0
chr17:50693542|50693731 hsa-miR-2861 1 0 0
chr17:50693542|50693731 hsa-miR-4322 1 0 0
chr17:50693542|50693731 hsa-miR-4257 1 0 0
chr17:50693542|50693731 hsa-miR-4260 1 0 0
chr17:50693542|50693731 hsa-miR-4253 0 1 0
chr17:50693542|50693731 hsa-miR-3665 1 0 0
chr17:50693542|50693731 hsa-miR-3916 0 1 0
chr17:50693542|50693731 hsa-miR-1268b 1 0 0
chr17:50693542|50693731 hsa-miR-378g 1 1 0
chr17:50693542|50693731 hsa-miR-378h 1 0 0
chr17:50693542|50693731 hsa-miR-4486 1 0 0
chr17:50693542|50693731 hsa-miR-1587 1 0 0
chr17:50693542|50693731 hsa-miR-4656 1 0 0
chr17:50693542|50693731 hsa-miR-4674 1 0 0
chr17:50693542|50693731 hsa-miR-4688 1 1 0
chr17:50693542|50693731 hsa-miR-4706 1 0 0
chr17:50693542|50693731 hsa-miR-5090 1 0 0
chr17:50693542|50693731 hsa-miR-5787 1 0 0
chr17:50693542|50693731 hsa-miR-6081 1 1 0
chr17:50693542|50693731 hsa-miR-6127 1 0 0
chr17:50693542|50693731 hsa-miR-6860 1 0 0
chr17:50693542|50693731 hsa-miR-8072 1 0 0
chr17:50693542|50693731 hsa-miR-8085 1 0 0
chr17:50693542|50693731 hsa-miR-12115 1 1 0
chr17:50693542|50693731 hsa-miR-12117 0 1 0
chr17:50693542|50693731 hsa-miR-12126 0 1 0
chr17:50693542|50693731 hsa-miR-187-3p 1 0 0
chr17:50693542|50693731 hsa-miR-92a-1-5p 1 0 0
chr17:50693542|50693731 hsa-miR-6825-5p 1 0 0
chr17:50693542|50693731 hsa-miR-27a-5p 1 1 0
chr17:50693542|50693731 hsa-miR-6799-5p 1 0 0
chr17:50693542|50693731 hsa-miR-6510-5p 1 0 0
chr17:50693542|50693731 hsa-miR-6728-5p 1 0 0
chr17:50693542|50693731 hsa-miR-1236-5p 1 0 0
chr17:50693542|50693731 hsa-miR-6089 1 0 0
chr17:50693542|50693731 hsa-miR-3192-5p 1 1 0
chr17:50693542|50693731 hsa-miR-1301-3p 1 0 0
chr17:50693542|50693731 hsa-miR-6820-5p 1 0 0
chr17:50693542|50693731 hsa-miR-6727-5p 1 0 0
chr17:50693542|50693731 hsa-miR-28-3p 1 0 0
chr17:50693542|50693731 hsa-miR-185-3p 1 0 0
chr17:50693542|50693731 hsa-miR-6798-5p 1 0 0
chr17:50693542|50693731 hsa-miR-2467-3p 1 0 0
chr17:50693542|50693731 hsa-miR-4691-3p 0 1 0
chr17:50693542|50693731 hsa-miR-30c-2-3p 0 1 0
chr17:50693542|50693731 hsa-miR-877-5p 1 0 0
chr17:50693542|50693731 hsa-miR-6847-5p 1 1 0
chr17:50693542|50693731 hsa-miR-7156-3p 1 0 0
chr17:50693542|50693731 hsa-miR-194-3p 1 0 0
chr17:50693542|50693731 hsa-miR-5010-5p 1 0 0
chr17:50693542|50693731 hsa-miR-744-5p 1 0 0
chr17:50693542|50693731 hsa-miR-1207-5p 1 0 0
chr17:50693542|50693731 hsa-miR-6775-5p 1 0 0
chr17:50693542|50693731 hsa-miR-1343-5p 1 0 0
chr17:50693542|50693731 hsa-miR-6726-5p 1 0 0
chr17:50693542|50693731 hsa-miR-6743-5p 1 0 0
chr17:50693542|50693731 hsa-miR-6752-5p 1 0 0
chr17:50693542|50693731 hsa-miR-6813-5p 1 1 0
chr17:50693542|50693731 hsa-miR-6815-5p 1 1 0
chr17:50693542|50693731 hsa-miR-6851-5p 1 0 0
chr17:50693542|50693731 hsa-miR-7110-5p 1 0 0
chr17:50693542|50693731 hsa-miR-6722-3p 1 0 0
chr17:50693542|50693731 hsa-miR-6779-5p 1 0 0
chr17:50693542|50693731 hsa-miR-6780a-5p 1 0 0
chr17:50693542|50693731 hsa-miR-3620-5p 1 0 0
chr17:50693542|50693731 hsa-miR-5189-5p 1 0 0
chr17:50693542|50693731 hsa-miR-6836-5p 1 0 0
chr17:50693542|50693731 hsa-miR-6862-5p 1 1 0
chr17:50693542|50693731 hsa-miR-1909-3p 1 0 0
chr17:50693542|50693731 hsa-miR-328-5p 1 0 0
chr17:50693542|50693731 hsa-miR-4632-5p 1 0 0
chr17:50693542|50693731 hsa-miR-4745-5p 1 0 0
chr17:50693542|50693731 hsa-miR-6858-5p 0 1 0
chr17:50693542|50693731 hsa-miR-3187-5p 1 0 0
chr17:50693542|50693731 hsa-miR-939-5p 1 0 0
chr17:50693542|50693731 hsa-miR-3199 0 1 0
chr17:50693542|50693731 hsa-miR-30c-1-3p 0 1 0
chr17:50693542|50693731 hsa-miR-6731-5p 1 0 0
chr17:50693542|50693731 hsa-miR-6856-5p 1 0 0
chr17:50693542|50693731 hsa-miR-4646-5p 1 0 0
chr17:50693542|50693731 hsa-miR-378a-3p 1 0 0
chr17:50693542|50693731 hsa-miR-10400-3p 1 0 0
chr17:50693542|50693731 hsa-miR-3085-3p 0 1 0
chr17:50693542|50693731 hsa-miR-6859-5p 1 0 0
chr17:50693542|50693731 hsa-miR-10394-5p 0 1 0
chr17:50693542|50693731 hsa-miR-6835-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr17:50693542|50693731
ORF Type ORF1
Protein Length 31
Nucleotide Length 96
Protein Sequence MLASVAKPRTCPAAAPLEAISQPGAPLLHFN
Nucleotide Sequence TTGCTTGCCTCTGTCGCTAAGCCCAGAACATGCCCTGCAGCTGCTCCTCTGGAGGCCATCTCCCAGCCAGGGGCTCCACTGCTCCACTTTAATTAA
CircID chr17:50693542|50693731
ORF Type ORF2
Protein Length 34
Nucleotide Length 105
Protein Sequence MPLSLSPEHALQLLLWRPSPSQGLHCSTLINLGG
Nucleotide Sequence TTGCCTCTGTCGCTAAGCCCAGAACATGCCCTGCAGCTGCTCCTCTGGAGGCCATCTCCCAGCCAGGGGCTCCACTGCTCCACTTTAATTAATCTGGGTGGCTGA
CircID chr17:50693542|50693731
ORF Type ORF3
Protein Length 31
Nucleotide Length 93
Protein Sequence MGDGLQRSSCRACSGLSDRGKQGTGVSGERW
Nucleotide Sequence CTGGGAGATGGCCTCCAGAGGAGCAGCTGCAGGGCATGTTCTGGGCTTAGCGACAGAGGCAAGCAAGGGACTGGTGTCTCTGGTGAGAGGTGG
CircID chr17:50693542|50693731
ORF Type ORF4
Protein Length 28
Nucleotide Length 84
Protein Sequence MASRGAAAGHVLGLATEASKGLVSLVRG
Nucleotide Sequence ATGGCCTCCAGAGGAGCAGCTGCAGGGCATGTTCTGGGCTTAGCGACAGAGGCAAGCAAGGGACTGGTGTCTCTGGTGAGAGGT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab