CircRNA Information

General Information
circRNA Basic Information
CircID chr17:50737302|50737432
Strand +
CircType exon
Host Gene ENSG00000108848.14;
Algorism CIRI2;
Sequence ACTCGCTTCTGTTTAGTATCCCCTTCTGCAGGCTTTTAGGGTACAGGTTGCTCTGCTCTGTTGCGTTTGCTGCTACTCCTCCATCCACTTGTCATCTTCCAAAAATTTGCTGACATCTCTAATGTTATCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:50737302|50737432 hsa-miR-15a-5p 0 0 1
chr17:50737302|50737432 hsa-miR-15a-3p 0 0 1
chr17:50737302|50737432 hsa-miR-15b-5p 0 0 1
chr17:50737302|50737432 hsa-miR-15b-3p 0 0 1
chr17:50737302|50737432 hsa-miR-195-5p 0 0 1
chr17:50737302|50737432 hsa-miR-195-3p 0 0 1
chr17:50737302|50737432 hsa-miR-424-5p 0 0 1
chr17:50737302|50737432 hsa-miR-424-3p 0 0 1
chr17:50737302|50737432 hsa-miR-497-5p 0 0 1
chr17:50737302|50737432 hsa-miR-497-3p 0 0 1
chr17:50737302|50737432 hsa-miR-503-5p 0 0 1
chr17:50737302|50737432 hsa-miR-503-3p 0 0 1
chr17:50737302|50737432 hsa-miR-545-5p 0 0 1
chr17:50737302|50737432 hsa-miR-545-3p 0 0 1
chr17:50737302|50737432 hsa-miR-596 0 0 1
chr17:50737302|50737432 hsa-miR-646 0 0 1
chr17:50737302|50737432 hsa-miR-649 0 0 1
chr17:50737302|50737432 hsa-miR-765 0 0 1
chr17:50737302|50737432 hsa-miR-298 0 0 1
chr17:50737302|50737432 hsa-miR-543 0 0 1
chr17:50737302|50737432 hsa-miR-1303 0 0 1
chr17:50737302|50737432 hsa-miR-486-5p 0 0 1
chr17:50737302|50737432 hsa-miR-16 0 0 1
chr17:50737302|50737432 hsa-miR-7 0 0 1
chr17:50737302|50737432 hsa-miR-107 1 0 0
chr17:50737302|50737432 hsa-miR-920 1 0 0
chr17:50737302|50737432 hsa-miR-3137 1 0 0
chr17:50737302|50737432 hsa-miR-3154 1 0 0
chr17:50737302|50737432 hsa-miR-4327 1 0 0
chr17:50737302|50737432 hsa-miR-3909 1 0 0
chr17:50737302|50737432 hsa-miR-3911 1 0 0
chr17:50737302|50737432 hsa-miR-3936 1 0 0
chr17:50737302|50737432 hsa-miR-4428 1 0 0
chr17:50737302|50737432 hsa-miR-4430 1 0 0
chr17:50737302|50737432 hsa-miR-4450 1 0 0
chr17:50737302|50737432 hsa-miR-4533 1 0 0
chr17:50737302|50737432 hsa-miR-4534 1 0 0
chr17:50737302|50737432 hsa-miR-4688 1 0 0
chr17:50737302|50737432 hsa-miR-4739 1 0 0
chr17:50737302|50737432 hsa-miR-4741 1 0 0
chr17:50737302|50737432 hsa-miR-5698 1 0 0
chr17:50737302|50737432 hsa-miR-6076 1 0 0
chr17:50737302|50737432 hsa-miR-6081 1 0 0
chr17:50737302|50737432 hsa-miR-6088 1 0 0
chr17:50737302|50737432 hsa-miR-12115 1 0 0
chr17:50737302|50737432 hsa-miR-4433b-3p 1 0 0
chr17:50737302|50737432 hsa-miR-6734-5p 1 0 0
chr17:50737302|50737432 hsa-miR-6894-5p 1 0 0
chr17:50737302|50737432 hsa-miR-6510-5p 1 0 0
chr17:50737302|50737432 hsa-miR-6833-5p 1 0 0
chr17:50737302|50737432 hsa-miR-6880-5p 1 0 0
chr17:50737302|50737432 hsa-miR-7847-3p 1 0 0
chr17:50737302|50737432 hsa-miR-6744-5p 1 0 0
chr17:50737302|50737432 hsa-miR-4722-5p 1 0 0
chr17:50737302|50737432 hsa-miR-6730-5p 1 0 0
chr17:50737302|50737432 hsa-miR-6759-5p 1 0 0
chr17:50737302|50737432 hsa-miR-197-5p 1 0 0
chr17:50737302|50737432 hsa-miR-3682-3p 1 0 0
chr17:50737302|50737432 hsa-miR-3605-5p 1 0 0
chr17:50737302|50737432 hsa-miR-6748-5p 1 0 0
chr17:50737302|50737432 hsa-miR-6829-5p 1 0 0
chr17:50737302|50737432 hsa-miR-6732-5p 1 0 0
chr17:50737302|50737432 hsa-miR-3190-3p 1 0 0
chr17:50737302|50737432 hsa-miR-6798-5p 1 0 0
chr17:50737302|50737432 hsa-miR-7109-5p 1 0 0
chr17:50737302|50737432 hsa-miR-6740-5p 1 0 0
chr17:50737302|50737432 hsa-miR-3691-5p 1 0 0
chr17:50737302|50737432 hsa-miR-103a-3p 1 0 0
chr17:50737302|50737432 hsa-miR-5010-5p 1 0 0
chr17:50737302|50737432 hsa-miR-423-5p 1 0 0
chr17:50737302|50737432 hsa-miR-6841-5p 1 0 0
chr17:50737302|50737432 hsa-miR-1233-5p 1 0 0
chr17:50737302|50737432 hsa-miR-4763-3p 1 0 0
chr17:50737302|50737432 hsa-miR-6778-5p 1 0 0
chr17:50737302|50737432 hsa-miR-6752-5p 1 0 0
chr17:50737302|50737432 hsa-miR-6803-5p 1 0 0
chr17:50737302|50737432 hsa-miR-1249-5p 1 0 0
chr17:50737302|50737432 hsa-miR-6788-5p 1 0 0
chr17:50737302|50737432 hsa-miR-6797-5p 1 0 0
chr17:50737302|50737432 hsa-miR-4728-5p 1 0 0
chr17:50737302|50737432 hsa-miR-5196-5p 1 0 0
chr17:50737302|50737432 hsa-miR-6738-5p 1 0 0
chr17:50737302|50737432 hsa-miR-6777-5p 1 0 0
chr17:50737302|50737432 hsa-miR-6794-5p 1 0 0
chr17:50737302|50737432 hsa-miR-6795-5p 1 0 0
chr17:50737302|50737432 hsa-miR-4723-5p 1 0 0
chr17:50737302|50737432 hsa-miR-4665-5p 1 0 0
chr17:50737302|50737432 hsa-miR-3173-3p 1 0 0
chr17:50737302|50737432 hsa-miR-4716-3p 1 0 0
chr17:50737302|50737432 hsa-miR-6849-5p 1 0 0
chr17:50737302|50737432 hsa-miR-4524a-5p 1 0 0
chr17:50737302|50737432 hsa-miR-4524b-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:50737302|50737432
ORF Type ORF1
Protein Length 35
Nucleotide Length 105
Protein Sequence MQAFRVQVALLCCVCCYSSIHLSSSKNLLTSLMLS
Nucleotide Sequence CTGCAGGCTTTTAGGGTACAGGTTGCTCTGCTCTGTTGCGTTTGCTGCTACTCCTCCATCCACTTGTCATCTTCCAAAAATTTGCTGACATCTCTAATGTTATCT
CircID chr17:50737302|50737432
ORF Type ORF2
Protein Length 34
Nucleotide Length 105
Protein Sequence MFSIPFCRLLGYRLLCSVAFAATPPSTCHLPKIC
Nucleotide Sequence CTGTTTAGTATCCCCTTCTGCAGGCTTTTAGGGTACAGGTTGCTCTGCTCTGTTGCGTTTGCTGCTACTCCTCCATCCACTTGTCATCTTCCAAAAATTTGCTGA
CircID chr17:50737302|50737432
ORF Type ORF3
Protein Length 26
Nucleotide Length 81
Protein Sequence MSANFWKMTSGWRSSSKRNRAEQPVP
Nucleotide Sequence ATGTCAGCAAATTTTTGGAAGATGACAAGTGGATGGAGGAGTAGCAGCAAACGCAACAGAGCAGAGCAACCTGTACCCTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab