CircRNA Information

General Information
circRNA Basic Information
CircID chr17:5208067|5208333
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence ACACCCCCTCAAGTTCAGCAAACACCAAAAGGAACTGATGACCTACCTCCAGTCCCAAATGTCTTGTGCTCTACTATCTTCTTAGTTGCTGAAGTCAGAAACTAGTATCCTTCTCCCCACACTGCTTTGTTTCCAGAGCTCCCCATGTTACTTGTGCCTCCCACGTGGTTCTCCAATGAGTCCACGTCTCTCCGTCACTGTTCTGAGGTCAGACAATTGCCAGCGCTTGCCAGGAGAATATCAACAGCCCCCTGACTGCTCCCCTGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:5208067|5208333 hsa-let-7b-5p 0 0 1
chr17:5208067|5208333 hsa-let-7b-3p 0 0 1
chr17:5208067|5208333 hsa-let-7c-5p 0 0 1
chr17:5208067|5208333 hsa-let-7c-3p 0 0 1
chr17:5208067|5208333 hsa-let-7d-5p 0 0 1
chr17:5208067|5208333 hsa-let-7d-3p 0 0 1
chr17:5208067|5208333 hsa-let-7e-5p 0 0 1
chr17:5208067|5208333 hsa-let-7e-3p 0 0 1
chr17:5208067|5208333 hsa-miR-31-5p 0 0 1
chr17:5208067|5208333 hsa-miR-31-3p 0 0 1
chr17:5208067|5208333 hsa-miR-98-5p 0 0 1
chr17:5208067|5208333 hsa-miR-98-3p 0 0 1
chr17:5208067|5208333 hsa-let-7g-5p 0 0 1
chr17:5208067|5208333 hsa-let-7g-3p 0 0 1
chr17:5208067|5208333 hsa-let-7i-5p 0 0 1
chr17:5208067|5208333 hsa-let-7i-3p 0 0 1
chr17:5208067|5208333 hsa-miR-185-5p 0 0 1
chr17:5208067|5208333 hsa-miR-185-3p 0 0 1
chr17:5208067|5208333 hsa-miR-345-5p 0 0 1
chr17:5208067|5208333 hsa-miR-345-3p 0 0 1
chr17:5208067|5208333 hsa-miR-518e-5p 0 0 1
chr17:5208067|5208333 hsa-miR-518e-3p 0 0 1
chr17:5208067|5208333 hsa-miR-545-5p 0 0 1
chr17:5208067|5208333 hsa-miR-545-3p 0 0 1
chr17:5208067|5208333 hsa-miR-589-5p 0 0 1
chr17:5208067|5208333 hsa-miR-589-3p 0 0 1
chr17:5208067|5208333 hsa-miR-617 0 0 1
chr17:5208067|5208333 hsa-miR-620 0 0 1
chr17:5208067|5208333 hsa-miR-632 0 0 1
chr17:5208067|5208333 hsa-miR-641 0 0 1
chr17:5208067|5208333 hsa-miR-650 0 0 1
chr17:5208067|5208333 hsa-miR-411-5p 0 0 1
chr17:5208067|5208333 hsa-miR-411-3p 0 0 1
chr17:5208067|5208333 hsa-miR-802 0 0 1
chr17:5208067|5208333 hsa-miR-920 1 1 1
chr17:5208067|5208333 hsa-miR-939-5p 0 0 1
chr17:5208067|5208333 hsa-miR-939-3p 0 0 1
chr17:5208067|5208333 hsa-miR-1231 0 0 1
chr17:5208067|5208333 hsa-miR-1299 0 1 1
chr17:5208067|5208333 hsa-miR-1267 0 0 1
chr17:5208067|5208333 hsa-miR-1270 0 0 1
chr17:5208067|5208333 hsa-miR-491-5p 0 0 1
chr17:5208067|5208333 hsa-miR-423-5p 0 0 1
chr17:5208067|5208333 hsa-miR-330-3p 0 0 1
chr17:5208067|5208333 hsa-miR-875-3p 0 1 1
chr17:5208067|5208333 hsa-miR-628-5p 0 0 1
chr17:5208067|5208333 hsa-miR-1302 0 0 1
chr17:5208067|5208333 hsa-let-7a 0 0 1
chr17:5208067|5208333 hsa-let-7f 0 0 1
chr17:5208067|5208333 hsa-miR-637 1 0 0
chr17:5208067|5208333 hsa-miR-762 1 0 0
chr17:5208067|5208333 hsa-miR-760 1 0 0
chr17:5208067|5208333 hsa-miR-2278 1 0 0
chr17:5208067|5208333 hsa-miR-2861 1 0 0
chr17:5208067|5208333 hsa-miR-3122 1 1 0
chr17:5208067|5208333 hsa-miR-3175 1 0 0
chr17:5208067|5208333 hsa-miR-3197 1 0 0
chr17:5208067|5208333 hsa-miR-4298 1 0 0
chr17:5208067|5208333 hsa-miR-3612 0 1 0
chr17:5208067|5208333 hsa-miR-3911 1 0 0
chr17:5208067|5208333 hsa-miR-4440 1 0 0
chr17:5208067|5208333 hsa-miR-4457 0 1 0
chr17:5208067|5208333 hsa-miR-4458 0 1 0
chr17:5208067|5208333 hsa-miR-3689c 1 1 0
chr17:5208067|5208333 hsa-miR-4488 1 0 0
chr17:5208067|5208333 hsa-miR-4492 1 0 0
chr17:5208067|5208333 hsa-miR-4498 1 0 0
chr17:5208067|5208333 hsa-miR-4508 1 0 0
chr17:5208067|5208333 hsa-miR-4516 0 1 0
chr17:5208067|5208333 hsa-miR-4519 1 0 0
chr17:5208067|5208333 hsa-miR-4525 1 0 0
chr17:5208067|5208333 hsa-miR-4654 1 0 0
chr17:5208067|5208333 hsa-miR-4656 1 0 0
chr17:5208067|5208333 hsa-miR-4688 1 0 0
chr17:5208067|5208333 hsa-miR-4692 1 0 0
chr17:5208067|5208333 hsa-miR-4706 1 0 0
chr17:5208067|5208333 hsa-miR-4739 1 0 0
chr17:5208067|5208333 hsa-miR-4741 1 0 0
chr17:5208067|5208333 hsa-miR-5090 1 0 0
chr17:5208067|5208333 hsa-miR-5190 0 1 0
chr17:5208067|5208333 hsa-miR-5192 1 0 0
chr17:5208067|5208333 hsa-miR-5703 1 0 0
chr17:5208067|5208333 hsa-miR-6081 1 0 0
chr17:5208067|5208333 hsa-miR-6085 1 0 0
chr17:5208067|5208333 hsa-miR-6090 1 0 0
chr17:5208067|5208333 hsa-miR-7974 1 0 0
chr17:5208067|5208333 hsa-miR-8052 1 1 0
chr17:5208067|5208333 hsa-miR-8089 0 1 0
chr17:5208067|5208333 hsa-miR-12115 1 0 0
chr17:5208067|5208333 hsa-miR-6734-5p 1 0 0
chr17:5208067|5208333 hsa-miR-3150a-3p 0 1 0
chr17:5208067|5208333 hsa-miR-7106-5p 1 0 0
chr17:5208067|5208333 hsa-miR-6825-5p 1 0 0
chr17:5208067|5208333 hsa-miR-4687-3p 1 0 0
chr17:5208067|5208333 hsa-miR-6799-5p 1 0 0
chr17:5208067|5208333 hsa-miR-139-3p 0 1 0
chr17:5208067|5208333 hsa-miR-3622a-5p 1 0 0
chr17:5208067|5208333 hsa-miR-3192-5p 1 0 0
chr17:5208067|5208333 hsa-miR-7847-3p 1 0 0
chr17:5208067|5208333 hsa-miR-4695-5p 1 0 0
chr17:5208067|5208333 hsa-miR-6746-5p 1 0 0
chr17:5208067|5208333 hsa-miR-197-5p 1 0 0
chr17:5208067|5208333 hsa-miR-6742-5p 1 0 0
chr17:5208067|5208333 hsa-miR-6716-5p 1 0 0
chr17:5208067|5208333 hsa-miR-3151-5p 1 0 0
chr17:5208067|5208333 hsa-miR-1292-5p 1 0 0
chr17:5208067|5208333 hsa-miR-6748-5p 1 0 0
chr17:5208067|5208333 hsa-miR-6772-5p 1 0 0
chr17:5208067|5208333 hsa-miR-6796-5p 1 1 0
chr17:5208067|5208333 hsa-miR-6732-5p 1 0 0
chr17:5208067|5208333 hsa-miR-6805-5p 1 0 0
chr17:5208067|5208333 hsa-miR-6827-5p 1 0 0
chr17:5208067|5208333 hsa-miR-6798-5p 1 0 0
chr17:5208067|5208333 hsa-miR-6760-5p 1 0 0
chr17:5208067|5208333 hsa-miR-6881-5p 1 0 0
chr17:5208067|5208333 hsa-miR-6874-5p 0 1 0
chr17:5208067|5208333 hsa-miR-6810-5p 1 0 0
chr17:5208067|5208333 hsa-miR-5088-5p 1 0 0
chr17:5208067|5208333 hsa-miR-7109-5p 1 0 0
chr17:5208067|5208333 hsa-miR-6740-5p 1 1 0
chr17:5208067|5208333 hsa-miR-4732-5p 0 1 0
chr17:5208067|5208333 hsa-miR-4717-3p 1 1 0
chr17:5208067|5208333 hsa-miR-149-3p 1 0 0
chr17:5208067|5208333 hsa-miR-6824-5p 1 0 0
chr17:5208067|5208333 hsa-miR-6789-5p 1 0 0
chr17:5208067|5208333 hsa-miR-6878-5p 1 1 0
chr17:5208067|5208333 hsa-miR-6869-5p 1 0 0
chr17:5208067|5208333 hsa-miR-4773 0 1 0
chr17:5208067|5208333 hsa-miR-518c-5p 0 1 0
chr17:5208067|5208333 hsa-miR-7849-3p 0 1 0
chr17:5208067|5208333 hsa-miR-576-3p 0 1 0
chr17:5208067|5208333 hsa-miR-1233-5p 1 1 0
chr17:5208067|5208333 hsa-miR-1273h-5p 1 1 0
chr17:5208067|5208333 hsa-miR-3689b-3p 1 1 0
chr17:5208067|5208333 hsa-miR-4763-3p 1 0 0
chr17:5208067|5208333 hsa-miR-6778-5p 1 1 0
chr17:5208067|5208333 hsa-miR-6870-5p 1 0 0
chr17:5208067|5208333 hsa-miR-1343-5p 1 1 0
chr17:5208067|5208333 hsa-miR-5001-5p 1 0 0
chr17:5208067|5208333 hsa-miR-6726-5p 1 0 0
chr17:5208067|5208333 hsa-miR-6743-5p 1 0 0
chr17:5208067|5208333 hsa-miR-6754-5p 1 0 0
chr17:5208067|5208333 hsa-miR-6756-5p 1 0 0
chr17:5208067|5208333 hsa-miR-6803-5p 1 0 0
chr17:5208067|5208333 hsa-miR-6813-5p 1 0 0
chr17:5208067|5208333 hsa-miR-6851-5p 1 0 0
chr17:5208067|5208333 hsa-miR-10401-5p 1 1 0
chr17:5208067|5208333 hsa-miR-6751-5p 1 0 0
chr17:5208067|5208333 hsa-miR-6763-5p 1 1 0
chr17:5208067|5208333 hsa-miR-6779-5p 1 0 0
chr17:5208067|5208333 hsa-miR-6780a-5p 1 1 0
chr17:5208067|5208333 hsa-miR-6797-5p 1 0 0
chr17:5208067|5208333 hsa-miR-3620-5p 1 0 0
chr17:5208067|5208333 hsa-miR-4728-5p 1 0 0
chr17:5208067|5208333 hsa-miR-6780b-5p 1 0 0
chr17:5208067|5208333 hsa-miR-1237-5p 1 0 0
chr17:5208067|5208333 hsa-miR-328-5p 1 1 0
chr17:5208067|5208333 hsa-miR-3689a-3p 1 1 0
chr17:5208067|5208333 hsa-miR-449c-5p 1 0 0
chr17:5208067|5208333 hsa-miR-4632-5p 1 0 0
chr17:5208067|5208333 hsa-miR-4649-5p 1 0 0
chr17:5208067|5208333 hsa-miR-4745-5p 1 0 0
chr17:5208067|5208333 hsa-miR-6794-5p 1 0 0
chr17:5208067|5208333 hsa-miR-6795-5p 1 0 0
chr17:5208067|5208333 hsa-miR-6846-5p 1 0 0
chr17:5208067|5208333 hsa-miR-6848-5p 1 1 0
chr17:5208067|5208333 hsa-miR-6883-5p 1 0 0
chr17:5208067|5208333 hsa-miR-6887-5p 1 0 0
chr17:5208067|5208333 hsa-miR-6889-5p 0 1 0
chr17:5208067|5208333 hsa-miR-4697-5p 1 0 0
chr17:5208067|5208333 hsa-miR-4723-5p 1 0 0
chr17:5208067|5208333 hsa-miR-6831-5p 1 0 0
chr17:5208067|5208333 hsa-miR-6885-5p 1 1 0
chr17:5208067|5208333 hsa-miR-4665-5p 1 0 0
chr17:5208067|5208333 hsa-miR-4700-5p 0 1 0
chr17:5208067|5208333 hsa-miR-3679-5p 1 0 0
chr17:5208067|5208333 hsa-miR-4716-3p 1 0 0
chr17:5208067|5208333 hsa-miR-541-3p 1 0 0
chr17:5208067|5208333 hsa-miR-4667-5p 1 0 0
chr17:5208067|5208333 hsa-miR-9851-5p 1 1 0
chr17:5208067|5208333 hsa-miR-4756-5p 1 0 0
chr17:5208067|5208333 hsa-miR-3913-5p 0 1 0
chr17:5208067|5208333 hsa-miR-217-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr17:5208067|5208333
ORF Type ORF1
Protein Length 42
Nucleotide Length 129
Protein Sequence MFPELPMLLVPPTWFSNESTSLRHCSEVRQLPALARRISTAP
Nucleotide Sequence TTGTTTCCAGAGCTCCCCATGTTACTTGTGCCTCCCACGTGGTTCTCCAATGAGTCCACGTCTCTCCGTCACTGTTCTGAGGTCAGACAATTGCCAGCGCTTGCCAGGAGAATATCAACAGCCCCCTGA
CircID chr17:5208067|5208333
ORF Type ORF2
Protein Length 60
Nucleotide Length 180
Protein Sequence MLKSETSILLPTLLCFQSSPCYLCLPRGSPMSPRLSVTVLRSDNCQRLPGEYQQPPDCSP
Nucleotide Sequence TTGCTGAAGTCAGAAACTAGTATCCTTCTCCCCACACTGCTTTGTTTCCAGAGCTCCCCATGTTACTTGTGCCTCCCACGTGGTTCTCCAATGAGTCCACGTCTCTCCGTCACTGTTCTGAGGTCAGACAATTGCCAGCGCTTGCCAGGAGAATATCAACAGCCCCCTGACTGCTCCCCT
CircID chr17:5208067|5208333
ORF Type ORF3
Protein Length 27
Nucleotide Length 84
Protein Sequence MTSATKKIVEHKTFGTGGRSSVPFGVC
Nucleotide Sequence CTGACTTCAGCAACTAAGAAGATAGTAGAGCACAAGACATTTGGGACTGGAGGTAGGTCATCAGTTCCTTTTGGTGTTTGCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab