CircRNA Information

General Information
circRNA Basic Information
CircID chr17:5365122|5368468
Strand +
CircType exon
Host Gene ENSG00000029725.16;
Algorism find_circ;CIRI2;DCC;
Sequence GTGAAAAAACTACAGCTGATGCTAAGGCAAGCTAATGACCAGTTAGAGAAGACAATGAAAGATAAGCAGGAGCTGGAAGACTTCATAAAGCAAAGCAGCGAAGATTCGAGTCACCAGATCTCTGCACTCGTCCTAAGAGCCCAGGCCTCCGAGATCTTACTTGAAGAGTTACAGCAGGGGCTTTCCCAGGCAAAGAGGGATGTTCAGGAACAGATG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:5365122|5368468 hsa-miR-214-5p 0 0 1
chr17:5365122|5368468 hsa-miR-214-3p 0 0 1
chr17:5365122|5368468 hsa-miR-503-5p 0 0 1
chr17:5365122|5368468 hsa-miR-503-3p 0 0 1
chr17:5365122|5368468 hsa-miR-506-5p 0 0 1
chr17:5365122|5368468 hsa-miR-506-3p 0 0 1
chr17:5365122|5368468 hsa-miR-583 0 0 1
chr17:5365122|5368468 hsa-miR-708-5p 0 0 1
chr17:5365122|5368468 hsa-miR-708-3p 0 0 1
chr17:5365122|5368468 hsa-miR-873-5p 0 0 1
chr17:5365122|5368468 hsa-miR-873-3p 0 0 1
chr17:5365122|5368468 hsa-miR-1226-5p 0 0 1
chr17:5365122|5368468 hsa-miR-1226-3p 0 0 1
chr17:5365122|5368468 hsa-miR-1303 0 0 1
chr17:5365122|5368468 hsa-miR-1253 0 0 1
chr17:5365122|5368468 hsa-miR-330-3p 0 0 1
chr17:5365122|5368468 hsa-miR-28-5p 0 0 1
chr17:5365122|5368468 hsa-miR-7 0 0 1
chr17:5365122|5368468 hsa-miR-124 0 0 1
chr17:5365122|5368468 hsa-miR-575 1 0 0
chr17:5365122|5368468 hsa-miR-1182 1 0 0
chr17:5365122|5368468 hsa-miR-3132 1 0 0
chr17:5365122|5368468 hsa-miR-3665 1 0 0
chr17:5365122|5368468 hsa-miR-3936 1 0 0
chr17:5365122|5368468 hsa-miR-4476 1 0 0
chr17:5365122|5368468 hsa-miR-4497 1 0 0
chr17:5365122|5368468 hsa-miR-4673 0 1 0
chr17:5365122|5368468 hsa-miR-4689 1 1 0
chr17:5365122|5368468 hsa-miR-4739 1 0 0
chr17:5365122|5368468 hsa-miR-4741 1 0 0
chr17:5365122|5368468 hsa-miR-5194 1 0 0
chr17:5365122|5368468 hsa-miR-5787 1 0 0
chr17:5365122|5368468 hsa-miR-6165 1 1 0
chr17:5365122|5368468 hsa-miR-8060 1 0 0
chr17:5365122|5368468 hsa-miR-8075 1 0 0
chr17:5365122|5368468 hsa-miR-8087 0 1 0
chr17:5365122|5368468 hsa-miR-1287-5p 1 0 0
chr17:5365122|5368468 hsa-miR-6854-5p 0 1 0
chr17:5365122|5368468 hsa-miR-6728-5p 0 1 0
chr17:5365122|5368468 hsa-miR-6089 1 0 0
chr17:5365122|5368468 hsa-miR-6873-5p 0 1 0
chr17:5365122|5368468 hsa-miR-4722-5p 1 0 0
chr17:5365122|5368468 hsa-miR-6730-5p 1 0 0
chr17:5365122|5368468 hsa-miR-6721-5p 1 0 0
chr17:5365122|5368468 hsa-miR-197-5p 1 0 0
chr17:5365122|5368468 hsa-miR-6798-5p 1 0 0
chr17:5365122|5368468 hsa-miR-193b-5p 1 0 0
chr17:5365122|5368468 hsa-miR-6784-5p 1 0 0
chr17:5365122|5368468 hsa-miR-6847-5p 1 0 0
chr17:5365122|5368468 hsa-miR-4733-3p 0 1 0
chr17:5365122|5368468 hsa-miR-6789-5p 1 0 0
chr17:5365122|5368468 hsa-miR-664b-5p 1 0 0
chr17:5365122|5368468 hsa-miR-4742-5p 0 1 0
chr17:5365122|5368468 hsa-miR-6792-5p 0 1 0
chr17:5365122|5368468 hsa-miR-4639-5p 0 1 0
chr17:5365122|5368468 hsa-miR-1207-5p 1 0 0
chr17:5365122|5368468 hsa-miR-4763-3p 1 1 0
chr17:5365122|5368468 hsa-miR-5001-5p 1 0 0
chr17:5365122|5368468 hsa-miR-6743-5p 1 0 0
chr17:5365122|5368468 hsa-miR-6813-5p 1 1 0
chr17:5365122|5368468 hsa-miR-6722-3p 1 0 0
chr17:5365122|5368468 hsa-miR-6797-5p 1 0 0
chr17:5365122|5368468 hsa-miR-6875-5p 1 0 0
chr17:5365122|5368468 hsa-miR-1909-3p 1 1 0
chr17:5365122|5368468 hsa-miR-4685-5p 1 0 0
chr17:5365122|5368468 hsa-miR-6846-5p 1 0 0
chr17:5365122|5368468 hsa-miR-6848-5p 1 0 0
chr17:5365122|5368468 hsa-miR-6858-5p 1 0 0
chr17:5365122|5368468 hsa-miR-939-5p 1 0 0
chr17:5365122|5368468 hsa-miR-365a-5p 1 0 0
chr17:5365122|5368468 hsa-miR-6758-5p 1 0 0
chr17:5365122|5368468 hsa-miR-92b-3p 1 0 0
chr17:5365122|5368468 hsa-miR-10523-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr17:5365122|5368468
ORF Type ORF1
Protein Length 66
Nucleotide Length 198
Protein Sequence MLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQM
Nucleotide Sequence ATGCTAAGGCAAGCTAATGACCAGTTAGAGAAGACAATGAAAGATAAGCAGGAGCTGGAAGACTTCATAAAGCAAAGCAGCGAAGATTCGAGTCACCAGATCTCTGCACTCGTCCTAAGAGCCCAGGCCTCCGAGATCTTACTTGAAGAGTTACAGCAGGGGCTTTCCCAGGCAAAGAGGGATGTTCAGGAACAGATG
CircID chr17:5365122|5368468
ORF Type ORF1
Protein Length 32
Nucleotide Length 96
Protein Sequence MLCFMKSSSSCLSFIVFSNWSLACLSISCSFF
Nucleotide Sequence CTGCTTTGCTTTATGAAGTCTTCCAGCTCCTGCTTATCTTTCATTGTCTTCTCTAACTGGTCATTAGCTTGCCTTAGCATCAGCTGTAGTTTTTTC
CircID chr17:5365122|5368468
ORF Type ORF2
Protein Length 36
Nucleotide Length 111
Protein Sequence MPGKAPAVTLQVRSRRPGLLGRVQRSGDSNLRCFAL
Nucleotide Sequence TTGCCTGGGAAAGCCCCTGCTGTAACTCTTCAAGTAAGATCTCGGAGGCCTGGGCTCTTAGGACGAGTGCAGAGATCTGGTGACTCGAATCTTCGCTGCTTTGCTTTATGA
CircID chr17:5365122|5368468
ORF Type ORF3
Protein Length 67
Nucleotide Length 201
Protein Sequence MMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQM
Nucleotide Sequence CTGATGCTAAGGCAAGCTAATGACCAGTTAGAGAAGACAATGAAAGATAAGCAGGAGCTGGAAGACTTCATAAAGCAAAGCAGCGAAGATTCGAGTCACCAGATCTCTGCACTCGTCCTAAGAGCCCAGGCCTCCGAGATCTTACTTGAAGAGTTACAGCAGGGGCTTTCCCAGGCAAAGAGGGATGTTCAGGAACAGATG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr17:5365122|5368468 U2AF2 4 6 0
chr17:5365122|5368468 ELAVL1 2 3 2
chr17:5365122|5368468 PRPF8 0 1 0
chr17:5365122|5368468 UPF1 3 0 0
chr17:5365122|5368468 FMR1 1 2 6
chr17:5365122|5368468 DGCR8 0 1 0
chr17:5365122|5368468 SRSF1 0 1 2
chr17:5365122|5368468 NOP58 0 1 2
chr17:5365122|5368468 SRSF3 1 0 0
chr17:5365122|5368468 NOP56 1 0 0
chr17:5365122|5368468 DDX54 0 0 8
chr17:5365122|5368468 PTBP1 0 0 1
chr17:5365122|5368468 TRA2A 0 0 1
chr17:5365122|5368468 DHX9 0 1 0
chr17:5365122|5368468 ACIN1 0 0 1
chr17:5365122|5368468 FXR1 1 0 0
chr17:5365122|5368468 FXR2 1 2 2
chr17:5365122|5368468 IGF2BP2 2 1 2
chr17:5365122|5368468 TARDBP 0 0 1
chr17:5365122|5368468 BUD13 0 0 1
chr17:5365122|5368468 DDX42 0 0 1
chr17:5365122|5368468 CSTF2T 0 0 1
chr17:5365122|5368468 DKC1 0 1 0
chr17:5365122|5368468 FBL 0 1 3
chr17:5365122|5368468 EWSR1 0 1 0
chr17:5365122|5368468 EIF4A3 2 2 3
chr17:5365122|5368468 AGO2 0 0 2
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab