CircRNA Information

General Information
circRNA Basic Information
CircID chr17:5423504|5423677
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CATGCTATGGACACCTCCCTCAAGGAGTGGATGCTCACAGGCCCTGGGGAGTTAATAGAGAATGTGGCACTTAAAATGAATAGGGCAAGGGATCAGACCATGCACTATCACTGTATCCTGTAAAATGGCAGGTTTACTTTTTTTTATTTTATTTTTTAAAGTGACAGGGTCTCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:5423504|5423677 hsa-miR-10a-5p 0 0 1
chr17:5423504|5423677 hsa-miR-10a-3p 0 0 1
chr17:5423504|5423677 hsa-miR-10b-5p 0 0 1
chr17:5423504|5423677 hsa-miR-10b-3p 0 0 1
chr17:5423504|5423677 hsa-miR-130a-5p 0 0 1
chr17:5423504|5423677 hsa-miR-130a-3p 0 0 1
chr17:5423504|5423677 hsa-miR-302a-5p 0 0 1
chr17:5423504|5423677 hsa-miR-302a-3p 0 0 1
chr17:5423504|5423677 hsa-miR-301a-5p 0 0 1
chr17:5423504|5423677 hsa-miR-301a-3p 0 0 1
chr17:5423504|5423677 hsa-miR-130b-5p 0 0 1
chr17:5423504|5423677 hsa-miR-130b-3p 0 0 1
chr17:5423504|5423677 hsa-miR-302b-5p 0 0 1
chr17:5423504|5423677 hsa-miR-302b-3p 0 0 1
chr17:5423504|5423677 hsa-miR-302c-5p 0 0 1
chr17:5423504|5423677 hsa-miR-302c-3p 0 0 1
chr17:5423504|5423677 hsa-miR-302d-5p 0 0 1
chr17:5423504|5423677 hsa-miR-302d-3p 0 0 1
chr17:5423504|5423677 hsa-miR-372-5p 0 0 1
chr17:5423504|5423677 hsa-miR-372-3p 0 0 1
chr17:5423504|5423677 hsa-miR-373-5p 0 0 1
chr17:5423504|5423677 hsa-miR-373-3p 0 0 1
chr17:5423504|5423677 hsa-miR-520e-5p 0 0 1
chr17:5423504|5423677 hsa-miR-520e-3p 0 0 1
chr17:5423504|5423677 hsa-miR-520b-5p 0 0 1
chr17:5423504|5423677 hsa-miR-520b-3p 0 0 1
chr17:5423504|5423677 hsa-miR-504-5p 0 0 1
chr17:5423504|5423677 hsa-miR-504-3p 0 0 1
chr17:5423504|5423677 hsa-miR-559 0 0 1
chr17:5423504|5423677 hsa-miR-579-5p 0 0 1
chr17:5423504|5423677 hsa-miR-579-3p 0 0 1
chr17:5423504|5423677 hsa-miR-623 0 0 1
chr17:5423504|5423677 hsa-miR-668-5p 0 0 1
chr17:5423504|5423677 hsa-miR-668-3p 0 0 1
chr17:5423504|5423677 hsa-miR-454-5p 0 0 1
chr17:5423504|5423677 hsa-miR-454-3p 0 0 1
chr17:5423504|5423677 hsa-miR-874-5p 0 0 1
chr17:5423504|5423677 hsa-miR-874-3p 0 0 1
chr17:5423504|5423677 hsa-miR-301b-5p 0 0 1
chr17:5423504|5423677 hsa-miR-301b-3p 0 0 1
chr17:5423504|5423677 hsa-miR-1227-5p 0 0 1
chr17:5423504|5423677 hsa-miR-1227-3p 0 0 1
chr17:5423504|5423677 hsa-miR-548j-5p 0 0 1
chr17:5423504|5423677 hsa-miR-548j-3p 0 0 1
chr17:5423504|5423677 hsa-miR-548n 0 0 1
chr17:5423504|5423677 hsa-miR-302e 0 0 1
chr17:5423504|5423677 hsa-miR-1321 0 1 1
chr17:5423504|5423677 hsa-miR-339-5p 0 1 1
chr17:5423504|5423677 hsa-miR-188-5p 0 0 1
chr17:5423504|5423677 hsa-miR-483-3p 0 0 1
chr17:5423504|5423677 hsa-miR-520d-3p 0 0 1
chr17:5423504|5423677 hsa-miR-548b-5p 0 0 1
chr17:5423504|5423677 hsa-miR-548d-5p 0 0 1
chr17:5423504|5423677 hsa-miR-519b-3p 0 0 1
chr17:5423504|5423677 hsa-miR-519c-3p 0 0 1
chr17:5423504|5423677 hsa-miR-520a-3p 1 0 1
chr17:5423504|5423677 hsa-miR-520c-3p 0 0 1
chr17:5423504|5423677 hsa-miR-548c-5p 0 0 1
chr17:5423504|5423677 hsa-miR-548a-5p 0 0 1
chr17:5423504|5423677 hsa-miR-548i 0 0 1
chr17:5423504|5423677 hsa-miR-664 0 0 1
chr17:5423504|5423677 hsa-miR-519a 0 0 1
chr17:5423504|5423677 hsa-miR-548h 0 0 1
chr17:5423504|5423677 hsa-miR-1182 1 0 0
chr17:5423504|5423677 hsa-miR-6129 0 1 0
chr17:5423504|5423677 hsa-miR-6799-5p 0 1 0
chr17:5423504|5423677 hsa-miR-1915-5p 1 0 0
chr17:5423504|5423677 hsa-miR-6735-3p 1 1 0
chr17:5423504|5423677 hsa-miR-6749-5p 1 0 0
chr17:5423504|5423677 hsa-miR-6811-3p 0 1 0
chr17:5423504|5423677 hsa-miR-6513-3p 1 0 0
chr17:5423504|5423677 hsa-miR-1296-5p 1 0 0
chr17:5423504|5423677 hsa-miR-4671-3p 0 1 0
chr17:5423504|5423677 hsa-miR-3151-3p 1 1 0
chr17:5423504|5423677 hsa-miR-6775-5p 1 0 0
chr17:5423504|5423677 hsa-miR-6866-3p 0 1 0
chr17:5423504|5423677 hsa-miR-3689a-3p 0 1 0
chr17:5423504|5423677 hsa-miR-4685-5p 1 1 0
chr17:5423504|5423677 hsa-miR-3085-5p 1 0 0
chr17:5423504|5423677 hsa-miR-6753-3p 1 0 0
chr17:5423504|5423677 hsa-miR-7107-3p 0 1 0
chr17:5423504|5423677 hsa-miR-6837-5p 0 1 0
chr17:5423504|5423677 hsa-miR-6775-3p 1 0 0
chr17:5423504|5423677 hsa-miR-6764-5p 0 1 0
chr17:5423504|5423677 hsa-miR-3121-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:5423504|5423677
ORF Type ORF1
Protein Length 38
Nucleotide Length 117
Protein Sequence MDTSLKEWMLTGPGELIENVALKMNRARDQTMHYHCIL
Nucleotide Sequence ATGGACACCTCCCTCAAGGAGTGGATGCTCACAGGCCCTGGGGAGTTAATAGAGAATGTGGCACTTAAAATGAATAGGGCAAGGGATCAGACCATGCACTATCACTGTATCCTGTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab