CircRNA Information

General Information
circRNA Basic Information
CircID chr17:5490352|5490621
Strand +
CircType exon
Host Gene ENSG00000167842.14;
Algorism CIRI2;
Sequence CTTAGGAACAACCATTGCTATTTCTCCCCTTTCCTTGGGTGACCTAACATTTTACAGGGACTAACGACATAAAGAAATATTAGATTCCATTGAGTTTAAACACAAATTTCCCACTGAGGGCATTAAATATTTGATGCTTATGAGTGTGAATAAATAAATATTAGGTATAAGGCAGATTCCAAAACCAACTGAAGTATGAAAACAAATTGGCATAGATACCTAACAGTCAGTAAAATTAAATTTCACTACTGAGTATATGCTACATGCTTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:5490352|5490621 hsa-miR-155-5p 0 0 1
chr17:5490352|5490621 hsa-miR-155-3p 0 0 1
chr17:5490352|5490621 hsa-miR-377-5p 0 0 1
chr17:5490352|5490621 hsa-miR-377-3p 0 0 1
chr17:5490352|5490621 hsa-miR-510-5p 0 0 1
chr17:5490352|5490621 hsa-miR-510-3p 0 0 1
chr17:5490352|5490621 hsa-miR-539-5p 0 0 1
chr17:5490352|5490621 hsa-miR-539-3p 0 0 1
chr17:5490352|5490621 hsa-miR-599 0 0 1
chr17:5490352|5490621 hsa-miR-936 0 0 1
chr17:5490352|5490621 hsa-miR-943 0 0 1
chr17:5490352|5490621 hsa-miR-1258 0 0 1
chr17:5490352|5490621 hsa-miR-512-5p 0 0 1
chr17:5490352|5490621 hsa-miR-339-5p 0 0 1
chr17:5490352|5490621 hsa-miR-331-5p 0 0 1
chr17:5490352|5490621 hsa-miR-875-5p 0 0 1
chr17:5490352|5490621 hsa-miR-199b-3p 0 0 1
chr17:5490352|5490621 hsa-miR-199a-3p 0 0 1
chr17:5490352|5490621 hsa-miR-485-3p 0 0 1
chr17:5490352|5490621 hsa-miR-590-3p 0 0 1
chr17:5490352|5490621 hsa-miR-1274a 0 0 1
chr17:5490352|5490621 hsa-miR-1274b 0 0 1
chr17:5490352|5490621 hsa-miR-453 0 0 1
chr17:5490352|5490621 hsa-miR-365 0 0 1
chr17:5490352|5490621 hsa-miR-3154 1 0 0
chr17:5490352|5490621 hsa-miR-3175 1 0 0
chr17:5490352|5490621 hsa-miR-4706 1 0 0
chr17:5490352|5490621 hsa-miR-4739 1 0 0
chr17:5490352|5490621 hsa-miR-5698 1 0 0
chr17:5490352|5490621 hsa-miR-6734-5p 1 0 0
chr17:5490352|5490621 hsa-miR-3150a-3p 1 0 0
chr17:5490352|5490621 hsa-miR-185-5p 1 0 0
chr17:5490352|5490621 hsa-miR-6824-5p 1 0 0
chr17:5490352|5490621 hsa-miR-181b-5p 1 0 0
chr17:5490352|5490621 hsa-miR-3664-5p 1 0 0
chr17:5490352|5490621 hsa-miR-6870-5p 1 0 0
chr17:5490352|5490621 hsa-miR-5196-5p 1 0 0
chr17:5490352|5490621 hsa-miR-939-5p 1 0 0
chr17:5490352|5490621 hsa-miR-6758-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


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circRNA Open Reading Frame (ORF)
CircID chr17:5490352|5490621
ORF Type ORF1
Protein Length 50
Nucleotide Length 153
Protein Sequence MPICFHTSVGFGICLIPNIYLFTLISIKYLMPSVGNLCLNSMESNISLCR
Nucleotide Sequence ATGCCAATTTGTTTTCATACTTCAGTTGGTTTTGGAATCTGCCTTATACCTAATATTTATTTATTCACACTCATAAGCATCAAATATTTAATGCCCTCAGTGGGAAATTTGTGTTTAAACTCAATGGAATCTAATATTTCTTTATGTCGTTAG

CircID chr17:5490352|5490621
ORF Type ORF2
Protein Length 30
Nucleotide Length 93
Protein Sequence MTVRYLCQFVFILQLVLESALYLIFIYSHS
Nucleotide Sequence CTGACTGTTAGGTATCTATGCCAATTTGTTTTCATACTTCAGTTGGTTTTGGAATCTGCCTTATACCTAATATTTATTTATTCACACTCATAA

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites