CircRNA Information

General Information
circRNA Basic Information
CircID chr17:57777864|57778124
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence AGGTTTGAGCCATCACACCCGGCCTGGCATTTTCAATACGAACTTGGGGCTTGGGATGGATAGAAAGGACATGGAGACATCATTCTGCATCACCTCCTCTGTGTTCTCTGCTCCTTGTCCTTCTAGTGGGAAAAGGGAGAGGACAAGGAAGGGACATTCCAAAGTGACTTGAGTCCTTTGGGCCCTGGGAGTGGGAAATTAAAGAGATGCACTGTAACCTTTCTTCCCTACTCCCTTAGCTGAGCCCAAATGCAATTCTGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:57777864|57778124 hsa-miR-33a-5p 0 0 1
chr17:57777864|57778124 hsa-miR-33a-3p 0 0 1
chr17:57777864|57778124 hsa-miR-148a-5p 0 0 1
chr17:57777864|57778124 hsa-miR-148a-3p 0 0 1
chr17:57777864|57778124 hsa-miR-204-5p 0 0 1
chr17:57777864|57778124 hsa-miR-204-3p 0 0 1
chr17:57777864|57778124 hsa-miR-211-5p 0 0 1
chr17:57777864|57778124 hsa-miR-211-3p 0 0 1
chr17:57777864|57778124 hsa-miR-224-5p 0 0 1
chr17:57777864|57778124 hsa-miR-224-3p 0 0 1
chr17:57777864|57778124 hsa-miR-152-5p 0 0 1
chr17:57777864|57778124 hsa-miR-152-3p 0 0 1
chr17:57777864|57778124 hsa-miR-136-5p 0 0 1
chr17:57777864|57778124 hsa-miR-136-3p 0 0 1
chr17:57777864|57778124 hsa-miR-206 0 0 1
chr17:57777864|57778124 hsa-miR-148b-5p 0 0 1
chr17:57777864|57778124 hsa-miR-148b-3p 0 0 1
chr17:57777864|57778124 hsa-miR-613 0 1 1
chr17:57777864|57778124 hsa-miR-33b-5p 0 0 1
chr17:57777864|57778124 hsa-miR-33b-3p 0 0 1
chr17:57777864|57778124 hsa-miR-298 0 0 1
chr17:57777864|57778124 hsa-miR-502-5p 0 0 1
chr17:57777864|57778124 hsa-miR-188-3p 0 0 1
chr17:57777864|57778124 hsa-miR-582-5p 0 0 1
chr17:57777864|57778124 hsa-miR-371-5p 0 0 1
chr17:57777864|57778124 hsa-miR-1260 0 0 1
chr17:57777864|57778124 hsa-miR-1 0 0 1
chr17:57777864|57778124 hsa-miR-24 0 0 1
chr17:57777864|57778124 hsa-miR-4270 0 1 0
chr17:57777864|57778124 hsa-miR-3918 0 1 0
chr17:57777864|57778124 hsa-miR-3919 0 1 0
chr17:57777864|57778124 hsa-miR-4437 0 1 0
chr17:57777864|57778124 hsa-miR-4510 0 1 0
chr17:57777864|57778124 hsa-miR-4519 1 0 0
chr17:57777864|57778124 hsa-miR-6081 0 1 0
chr17:57777864|57778124 hsa-miR-9500 0 1 0
chr17:57777864|57778124 hsa-miR-12127 1 0 0
chr17:57777864|57778124 hsa-miR-6510-5p 0 1 0
chr17:57777864|57778124 hsa-miR-3663-3p 1 0 0
chr17:57777864|57778124 hsa-miR-6089 1 0 0
chr17:57777864|57778124 hsa-miR-24-3p 0 1 0
chr17:57777864|57778124 hsa-miR-3189-5p 1 0 0
chr17:57777864|57778124 hsa-miR-6774-3p 0 1 0
chr17:57777864|57778124 hsa-miR-5006-5p 0 1 0
chr17:57777864|57778124 hsa-miR-532-3p 0 1 0
chr17:57777864|57778124 hsa-miR-5088-5p 0 1 0
chr17:57777864|57778124 hsa-miR-877-5p 0 1 0
chr17:57777864|57778124 hsa-miR-6847-5p 0 1 0
chr17:57777864|57778124 hsa-miR-7854-3p 0 1 0
chr17:57777864|57778124 hsa-miR-7111-3p 0 1 0
chr17:57777864|57778124 hsa-miR-6739-3p 0 1 0
chr17:57777864|57778124 hsa-miR-3925-5p 0 1 0
chr17:57777864|57778124 hsa-miR-4646-3p 1 0 0
chr17:57777864|57778124 hsa-miR-1236-3p 0 1 0
chr17:57777864|57778124 hsa-miR-2114-5p 0 1 0
chr17:57777864|57778124 hsa-miR-6867-3p 0 1 0
chr17:57777864|57778124 hsa-miR-7151-5p 0 1 0
chr17:57777864|57778124 hsa-miR-3156-3p 0 1 0
chr17:57777864|57778124 hsa-miR-219b-3p 0 1 0
chr17:57777864|57778124 hsa-miR-6851-5p 0 1 0
chr17:57777864|57778124 hsa-miR-7110-5p 0 1 0
chr17:57777864|57778124 hsa-miR-6751-5p 1 0 0
chr17:57777864|57778124 hsa-miR-6797-5p 0 1 0
chr17:57777864|57778124 hsa-miR-4685-3p 0 1 0
chr17:57777864|57778124 hsa-miR-6866-3p 0 1 0
chr17:57777864|57778124 hsa-miR-186-3p 0 1 0
chr17:57777864|57778124 hsa-miR-4685-5p 0 1 0
chr17:57777864|57778124 hsa-miR-6876-5p 1 0 0
chr17:57777864|57778124 hsa-miR-6837-5p 0 1 0
chr17:57777864|57778124 hsa-miR-7155-3p 0 1 0
chr17:57777864|57778124 hsa-miR-6834-3p 0 1 0
chr17:57777864|57778124 hsa-miR-519c-3p 1 1 0
chr17:57777864|57778124 hsa-miR-3136-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:57777864|57778124
ORF Type ORF1
Protein Length 55
Nucleotide Length 168
Protein Sequence MSHHTRPGIFNTNLGLGMDRKDMETSFCITSSVFSAPCPSSGKRERTRKGHSKVT
Nucleotide Sequence TTGAGCCATCACACCCGGCCTGGCATTTTCAATACGAACTTGGGGCTTGGGATGGATAGAAAGGACATGGAGACATCATTCTGCATCACCTCCTCTGTGTTCTCTGCTCCTTGTCCTTCTAGTGGGAAAAGGGAGAGGACAAGGAAGGGACATTCCAAAGTGACTTGA
CircID chr17:57777864|57778124
ORF Type ORF2
Protein Length 47
Nucleotide Length 144
Protein Sequence MAFSIRTWGLGWIERTWRHHSASPPLCSLLLVLLVGKGRGQGRDIPK
Nucleotide Sequence CTGGCATTTTCAATACGAACTTGGGGCTTGGGATGGATAGAAAGGACATGGAGACATCATTCTGCATCACCTCCTCTGTGTTCTCTGCTCCTTGTCCTTCTAGTGGGAAAAGGGAGAGGACAAGGAAGGGACATTCCAAAGTGA
CircID chr17:57777864|57778124
ORF Type ORF3
Protein Length 49
Nucleotide Length 150
Protein Sequence MECPFLVLSLFPLEGQGAENTEEVMQNDVSMSFLSIPSPKFVLKMPGRV
Nucleotide Sequence TTGGAATGTCCCTTCCTTGTCCTCTCCCTTTTCCCACTAGAAGGACAAGGAGCAGAGAACACAGAGGAGGTGATGCAGAATGATGTCTCCATGTCCTTTCTATCCATCCCAAGCCCCAAGTTCGTATTGAAAATGCCAGGCCGGGTGTGA
CircID chr17:57777864|57778124
ORF Type ORF4
Protein Length 25
Nucleotide Length 78
Protein Sequence MSLPCPLPFPTRRTRSREHRGGDAE
Nucleotide Sequence ATGTCCCTTCCTTGTCCTCTCCCTTTTCCCACTAGAAGGACAAGGAGCAGAGAACACAGAGGAGGTGATGCAGAATGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab