CircRNA Information

General Information
circRNA Basic Information
CircID chr17:58270815|58271815
Strand +
CircType exon
Host Gene ENSG00000005381.7;
Algorism CIRI2;
Sequence CTGAAATTGGCGAGGAAACTGATGGAGCAGTATGGCACGCCCAACAACATCGACATCTGGATGGGCGGCGTGTCCGAGCCTCTGAAGCGCAAAGGCCGCGTGGGCCCACTCCTCGCCTGCATCATCGGTACCCAGTTCAGGAAGCTCCGGGATGGTGATCGAACGAGGGTGTGTTCAGCATGCAGCAGCGACAGGCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:58270815|58271815 hsa-miR-150-5p 0 0 1
chr17:58270815|58271815 hsa-miR-150-3p 0 0 1
chr17:58270815|58271815 hsa-miR-585-5p 0 0 1
chr17:58270815|58271815 hsa-miR-585-3p 0 0 1
chr17:58270815|58271815 hsa-miR-639 0 1 1
chr17:58270815|58271815 hsa-miR-1238-5p 0 0 1
chr17:58270815|58271815 hsa-miR-1238-3p 0 0 1
chr17:58270815|58271815 hsa-miR-1200 0 0 1
chr17:58270815|58271815 hsa-miR-1203 0 0 1
chr17:58270815|58271815 hsa-miR-1322 0 0 1
chr17:58270815|58271815 hsa-miR-296-5p 0 0 1
chr17:58270815|58271815 hsa-miR-532-3p 0 0 1
chr17:58270815|58271815 hsa-miR-1225-5p 0 0 1
chr17:58270815|58271815 hsa-miR-1224-3p 0 0 1
chr17:58270815|58271815 hsa-miR-516a-3p 0 0 1
chr17:58270815|58271815 hsa-miR-362-3p 0 0 1
chr17:58270815|58271815 hsa-miR-151-5p 0 0 1
chr17:58270815|58271815 hsa-miR-1260 0 0 1
chr17:58270815|58271815 hsa-miR-1280 0 0 1
chr17:58270815|58271815 hsa-miR-1268 0 0 1
chr17:58270815|58271815 hsa-miR-329 0 0 1
chr17:58270815|58271815 hsa-miR-2113 1 0 0
chr17:58270815|58271815 hsa-miR-1538 1 0 0
chr17:58270815|58271815 hsa-miR-1260b 0 1 0
chr17:58270815|58271815 hsa-miR-3655 1 1 0
chr17:58270815|58271815 hsa-miR-4449 1 0 0
chr17:58270815|58271815 hsa-miR-4479 1 0 0
chr17:58270815|58271815 hsa-miR-4481 0 1 0
chr17:58270815|58271815 hsa-miR-4539 0 1 0
chr17:58270815|58271815 hsa-miR-4651 1 0 0
chr17:58270815|58271815 hsa-miR-4674 1 0 0
chr17:58270815|58271815 hsa-miR-6075 0 1 0
chr17:58270815|58271815 hsa-miR-4433b-3p 0 1 0
chr17:58270815|58271815 hsa-miR-6861-5p 0 1 0
chr17:58270815|58271815 hsa-miR-4728-3p 0 1 0
chr17:58270815|58271815 hsa-miR-6742-5p 1 0 0
chr17:58270815|58271815 hsa-miR-4655-3p 0 1 0
chr17:58270815|58271815 hsa-miR-2467-5p 0 1 0
chr17:58270815|58271815 hsa-miR-6735-3p 0 1 0
chr17:58270815|58271815 hsa-miR-4713-5p 0 1 0
chr17:58270815|58271815 hsa-miR-4783-3p 1 0 0
chr17:58270815|58271815 hsa-miR-6784-5p 1 0 0
chr17:58270815|58271815 hsa-miR-4690-5p 1 1 0
chr17:58270815|58271815 hsa-miR-5196-3p 0 1 0
chr17:58270815|58271815 hsa-miR-629-3p 0 1 0
chr17:58270815|58271815 hsa-miR-4632-3p 0 1 0
chr17:58270815|58271815 hsa-miR-7848-3p 0 1 0
chr17:58270815|58271815 hsa-miR-6865-3p 0 1 0
chr17:58270815|58271815 hsa-miR-2277-5p 1 0 0
chr17:58270815|58271815 hsa-miR-6775-5p 1 0 0
chr17:58270815|58271815 hsa-miR-1343-5p 1 0 0
chr17:58270815|58271815 hsa-miR-4649-5p 1 1 0
chr17:58270815|58271815 hsa-miR-4685-5p 1 0 0
chr17:58270815|58271815 hsa-miR-4745-5p 0 1 0
chr17:58270815|58271815 hsa-miR-6729-5p 1 0 0
chr17:58270815|58271815 hsa-miR-675-5p 1 0 0
chr17:58270815|58271815 hsa-miR-4758-5p 1 0 0
chr17:58270815|58271815 hsa-miR-6511b-5p 1 1 0
chr17:58270815|58271815 hsa-miR-10398-3p 1 0 0
chr17:58270815|58271815 hsa-miR-6724-5p 1 1 0
chr17:58270815|58271815 hsa-miR-329-3p 0 1 0
chr17:58270815|58271815 hsa-miR-217-3p 0 1 0
chr17:58270815|58271815 hsa-miR-548ay-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr17:58270815|58271815
ORF Type ORF1
Protein Length 65
Nucleotide Length 195
Protein Sequence LKLARKLMEQYGTPNNIDIWMGGVSEPLKRKGRVGPLLACIIGTQFRKLRDGDRTRVCSACSSDR
Nucleotide Sequence CTGAAATTGGCGAGGAAACTGATGGAGCAGTATGGCACGCCCAACAACATCGACATCTGGATGGGCGGCGTGTCCGAGCCTCTGAAGCGCAAAGGCCGCGTGGGCCCACTCCTCGCCTGCATCATCGGTACCCAGTTCAGGAAGCTCCGGGATGGTGATCGAACGAGGGTGTGTTCAGCATGCAGCAGCGACAGG
CircID chr17:58270815|58271815
ORF Type ORF2
Protein Length 33
Nucleotide Length 102
Protein Sequence MDGRRVRASEAQRPRGPTPRLHHRYPVQEAPGW
Nucleotide Sequence CTGGATGGGCGGCGTGTCCGAGCCTCTGAAGCGCAAAGGCCGCGTGGGCCCACTCCTCGCCTGCATCATCGGTACCCAGTTCAGGAAGCTCCGGGATGGTGA
CircID chr17:58270815|58271815
ORF Type ORF3
Protein Length 64
Nucleotide Length 192
Protein Sequence MSLLHAEHTLVRSPSRSFLNWVPMMQARSGPTRPLRFRGSDTPPIQMSMLLGVPYCSISFLANF
Nucleotide Sequence CTGTCGCTGCTGCATGCTGAACACACCCTCGTTCGATCACCATCCCGGAGCTTCCTGAACTGGGTACCGATGATGCAGGCGAGGAGTGGGCCCACGCGGCCTTTGCGCTTCAGAGGCTCGGACACGCCGCCCATCCAGATGTCGATGTTGTTGGGCGTGCCATACTGCTCCATCAGTTTCCTCGCCAATTTC
CircID chr17:58270815|58271815
ORF Type ORF4
Protein Length 45
Nucleotide Length 135
Protein Sequence MGTDDAGEEWAHAAFALQRLGHAAHPDVDVVGRAILLHQFPRQFQ
Nucleotide Sequence CTGGGTACCGATGATGCAGGCGAGGAGTGGGCCCACGCGGCCTTTGCGCTTCAGAGGCTCGGACACGCCGCCCATCCAGATGTCGATGTTGTTGGGCGTGCCATACTGCTCCATCAGTTTCCTCGCCAATTTCAG
CircID chr17:58270815|58271815
ORF Type ORF1
Protein Length 70
Nucleotide Length 210
Protein Sequence LKLARKLMEQYGTPNNIDIWMGGVSEPLKRKGRVGPLLACIIGTQFRKLRDGDRFWWENEGVFSMQQRQA
Nucleotide Sequence CTGAAATTGGCGAGGAAACTGATGGAGCAGTATGGCACGCCCAACAACATCGACATCTGGATGGGCGGCGTGTCCGAGCCTCTGAAGCGCAAAGGCCGCGTGGGCCCACTCCTCGCCTGCATCATCGGTACCCAGTTCAGGAAGCTCCGGGATGGTGATCGGTTTTGGTGGGAGAACGAGGGTGTGTTCAGCATGCAGCAGCGACAGGCC
CircID chr17:58270815|58271815
ORF Type ORF3
Protein Length 69
Nucleotide Length 207
Protein Sequence MSLLHAEHTLVLPPKPITIPELPELGTDDAGEEWAHAAFALQRLGHAAHPDVDVVGRAILLHQFPRQFQ
Nucleotide Sequence CTGTCGCTGCTGCATGCTGAACACACCCTCGTTCTCCCACCAAAACCGATCACCATCCCGGAGCTTCCTGAACTGGGTACCGATGATGCAGGCGAGGAGTGGGCCCACGCGGCCTTTGCGCTTCAGAGGCTCGGACACGCCGCCCATCCAGATGTCGATGTTGTTGGGCGTGCCATACTGCTCCATCAGTTTCCTCGCCAATTTCAG
CircID chr17:58270815|58271815
ORF Type ORF4
Protein Length 64
Nucleotide Length 192
Protein Sequence MLNTPSFSHQNRSPSRSFLNWVPMMQARSGPTRPLRFRGSDTPPIQMSMLLGVPYCSISFLANF
Nucleotide Sequence ATGCTGAACACACCCTCGTTCTCCCACCAAAACCGATCACCATCCCGGAGCTTCCTGAACTGGGTACCGATGATGCAGGCGAGGAGTGGGCCCACGCGGCCTTTGCGCTTCAGAGGCTCGGACACGCCGCCCATCCAGATGTCGATGTTGTTGGGCGTGCCATACTGCTCCATCAGTTTCCTCGCCAATTTC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab