CircRNA Information

General Information
circRNA Basic Information
CircID chr17:58273414|58275562
Strand -
CircType exon
Host Gene ENSG00000005381.7;
Algorism CIRI2;
Sequence CTTCCAGCACGACCCTCCAGGAGGCAAAAAAGACCCTGCTGAGGGGGACACGGGGGTTGGGTTCCATGGGCTGGTACCGATTGTCCAGGCGGAACATGAAGGGTTGGATGAGGGTGTGGCCGTAGCGGAAGGCATTGGTGAAGACGTTGGCGATGCGTGGGTCCACTGAGTCATTGTAGGAACGGTACGTGGGCAGGTACTTCCTCATGGCCGTTGGCCCCAGCACCAGGGGCAGGTAGTCCCGGTAAGTGATGATCTGGACCATGGCCCCCACGAT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:58273414|58275562 hsa-miR-197-5p 0 0 1
chr17:58273414|58275562 hsa-miR-197-3p 0 0 1
chr17:58273414|58275562 hsa-miR-198 0 0 1
chr17:58273414|58275562 hsa-miR-205-5p 0 0 1
chr17:58273414|58275562 hsa-miR-205-3p 0 0 1
chr17:58273414|58275562 hsa-miR-214-5p 0 0 1
chr17:58273414|58275562 hsa-miR-214-3p 0 0 1
chr17:58273414|58275562 hsa-miR-126-5p 0 0 1
chr17:58273414|58275562 hsa-miR-126-3p 0 0 1
chr17:58273414|58275562 hsa-miR-412-5p 0 0 1
chr17:58273414|58275562 hsa-miR-412-3p 0 0 1
chr17:58273414|58275562 hsa-miR-572 1 0 1
chr17:58273414|58275562 hsa-miR-634 0 0 1
chr17:58273414|58275562 hsa-miR-662 1 0 1
chr17:58273414|58275562 hsa-miR-922 0 0 1
chr17:58273414|58275562 hsa-miR-1182 0 0 1
chr17:58273414|58275562 hsa-miR-1287-5p 0 0 1
chr17:58273414|58275562 hsa-miR-1287-3p 0 0 1
chr17:58273414|58275562 hsa-miR-129-5p 0 0 1
chr17:58273414|58275562 hsa-miR-193a-5p 0 0 1
chr17:58273414|58275562 hsa-miR-532-5p 0 1 1
chr17:58273414|58275562 hsa-miR-331-3p 0 0 1
chr17:58273414|58275562 hsa-miR-324-3p 0 0 1
chr17:58273414|58275562 hsa-miR-1254 0 0 1
chr17:58273414|58275562 hsa-miR-762 1 0 0
chr17:58273414|58275562 hsa-miR-761 0 1 0
chr17:58273414|58275562 hsa-miR-1471 1 0 0
chr17:58273414|58275562 hsa-miR-1913 0 1 0
chr17:58273414|58275562 hsa-miR-548q 0 1 0
chr17:58273414|58275562 hsa-miR-718 0 1 0
chr17:58273414|58275562 hsa-miR-4447 0 1 0
chr17:58273414|58275562 hsa-miR-4469 1 0 0
chr17:58273414|58275562 hsa-miR-4489 0 1 0
chr17:58273414|58275562 hsa-miR-4641 1 0 0
chr17:58273414|58275562 hsa-miR-5787 1 0 0
chr17:58273414|58275562 hsa-miR-6072 0 1 0
chr17:58273414|58275562 hsa-miR-9898 0 1 0
chr17:58273414|58275562 hsa-miR-4731-5p 0 1 0
chr17:58273414|58275562 hsa-miR-4665-3p 1 0 0
chr17:58273414|58275562 hsa-miR-1227-5p 0 1 0
chr17:58273414|58275562 hsa-miR-6515-5p 0 1 0
chr17:58273414|58275562 hsa-miR-6849-3p 1 0 0
chr17:58273414|58275562 hsa-miR-6774-3p 0 1 0
chr17:58273414|58275562 hsa-miR-6858-3p 1 0 0
chr17:58273414|58275562 hsa-miR-4763-5p 1 0 0
chr17:58273414|58275562 hsa-miR-3677-3p 0 1 0
chr17:58273414|58275562 hsa-miR-4638-3p 0 1 0
chr17:58273414|58275562 hsa-miR-1237-3p 0 1 0
chr17:58273414|58275562 hsa-miR-1226-3p 1 0 0
chr17:58273414|58275562 hsa-miR-6785-3p 0 1 0
chr17:58273414|58275562 hsa-miR-6793-3p 1 0 0
chr17:58273414|58275562 hsa-miR-6837-3p 0 1 0
chr17:58273414|58275562 hsa-miR-6508-3p 0 1 0
chr17:58273414|58275562 hsa-miR-6865-3p 1 1 0
chr17:58273414|58275562 hsa-miR-6859-3p 1 1 0
chr17:58273414|58275562 hsa-miR-5589-3p 1 0 0
chr17:58273414|58275562 hsa-miR-6748-3p 1 0 0
chr17:58273414|58275562 hsa-miR-3620-3p 1 0 0
chr17:58273414|58275562 hsa-miR-4717-5p 1 0 0
chr17:58273414|58275562 hsa-miR-6729-3p 1 0 0
chr17:58273414|58275562 hsa-miR-4485-5p 0 1 0
chr17:58273414|58275562 hsa-miR-5585-5p 0 1 0
chr17:58273414|58275562 hsa-miR-1207-5p 1 0 0
chr17:58273414|58275562 hsa-miR-4763-3p 1 0 0
chr17:58273414|58275562 hsa-miR-3127-3p 1 0 0
chr17:58273414|58275562 hsa-miR-6754-3p 1 1 0
chr17:58273414|58275562 hsa-miR-6848-5p 1 0 0
chr17:58273414|58275562 hsa-miR-6845-5p 0 1 0
chr17:58273414|58275562 hsa-miR-1271-3p 1 0 0
chr17:58273414|58275562 hsa-miR-4472 0 1 0
chr17:58273414|58275562 hsa-miR-2682-3p 1 0 0
chr17:58273414|58275562 hsa-miR-6791-5p 1 0 0
chr17:58273414|58275562 hsa-miR-6762-5p 1 1 0
chr17:58273414|58275562 hsa-miR-4722-3p 1 0 0
chr17:58273414|58275562 hsa-miR-6862-3p 1 0 0
chr17:58273414|58275562 hsa-miR-6891-3p 0 1 0
chr17:58273414|58275562 hsa-miR-7114-3p 0 1 0
chr17:58273414|58275562 hsa-miR-515-3p 0 1 0
chr17:58273414|58275562 hsa-miR-4690-3p 1 0 0
chr17:58273414|58275562 hsa-miR-10523-5p 0 1 0
chr17:58273414|58275562 hsa-miR-580-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr17:58273414|58275562
ORF Type ORF1
Protein Length 28
Nucleotide Length 87
Protein Sequence MSHCRNGTWAGTSSWPLAPAPGAGSPGK
Nucleotide Sequence CTGAGTCATTGTAGGAACGGTACGTGGGCAGGTACTTCCTCATGGCCGTTGGCCCCAGCACCAGGGGCAGGTAGTCCCGGTAAGTGA
CircID chr17:58273414|58275562
ORF Type ORF2
Protein Length 32
Nucleotide Length 99
Protein Sequence MVPIVQAEHEGLDEGVAVAEGIGEDVGDAWVH
Nucleotide Sequence CTGGTACCGATTGTCCAGGCGGAACATGAAGGGTTGGATGAGGGTGTGGCCGTAGCGGAAGGCATTGGTGAAGACGTTGGCGATGCGTGGGTCCACTGA
CircID chr17:58273414|58275562
ORF Type ORF3
Protein Length 29
Nucleotide Length 90
Protein Sequence MLRGTRGLGSMGWYRLSRRNMKGWMRVWP
Nucleotide Sequence CTGCTGAGGGGGACACGGGGGTTGGGTTCCATGGGCTGGTACCGATTGTCCAGGCGGAACATGAAGGGTTGGATGAGGGTGTGGCCGTAG
CircID chr17:58273414|58275562
ORF Type ORF4
Protein Length 88
Nucleotide Length 264
Protein Sequence MVQIITYRDYLPLVLGPTAMRKYLPTYRSYNDSVDPRIANVFTNAFRYGHTLIQPFMFRLDNRYQPMEPNPRVPLSRVFFASWRVVLE
Nucleotide Sequence ATGGTCCAGATCATCACTTACCGGGACTACCTGCCCCTGGTGCTGGGGCCAACGGCCATGAGGAAGTACCTGCCCACGTACCGTTCCTACAATGACTCAGTGGACCCACGCATCGCCAACGTCTTCACCAATGCCTTCCGCTACGGCCACACCCTCATCCAACCCTTCATGTTCCGCCTGGACAATCGGTACCAGCCCATGGAACCCAACCCCCGTGTCCCCCTCAGCAGGGTCTTTTTTGCCTCCTGGAGGGTCGTGCTGGAA
CircID chr17:58273414|58275562
ORF Type ORF5
Protein Length 58
Nucleotide Length 174
Protein Sequence MTQWTHASPTSSPMPSATATPSSNPSCSAWTIGTSPWNPTPVSPSAGSFLPPGGSCWK
Nucleotide Sequence ATGACTCAGTGGACCCACGCATCGCCAACGTCTTCACCAATGCCTTCCGCTACGGCCACACCCTCATCCAACCCTTCATGTTCCGCCTGGACAATCGGTACCAGCCCATGGAACCCAACCCCCGTGTCCCCCTCAGCAGGGTCTTTTTTGCCTCCTGGAGGGTCGTGCTGGAAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab