CircRNA Information

General Information
circRNA Basic Information
CircID chr17:58273448|58275599
Strand -
CircType exon
Host Gene ENSG00000005381.7;
Algorism CIRI2;
Sequence CCTGCTGAGGGGGACACGGGGGTTGGGTTCCATGGGCTGGTACCGATTGTCCAGGCGGAACATGAAGGGTTGGATGAGGGTGTGGCCGTAGCGGAAGGCATTGGTGAAGACGTTGGCGATGCGTGGGTCCACTGAGTCATTGTAGGAACGGTACGTGGGCAGGTATCCCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:58273448|58275599 hsa-miR-197-5p 0 0 1
chr17:58273448|58275599 hsa-miR-197-3p 0 0 1
chr17:58273448|58275599 hsa-miR-198 0 0 1
chr17:58273448|58275599 hsa-miR-205-5p 0 0 1
chr17:58273448|58275599 hsa-miR-205-3p 0 0 1
chr17:58273448|58275599 hsa-miR-214-5p 0 0 1
chr17:58273448|58275599 hsa-miR-214-3p 0 0 1
chr17:58273448|58275599 hsa-miR-126-5p 0 0 1
chr17:58273448|58275599 hsa-miR-126-3p 0 0 1
chr17:58273448|58275599 hsa-miR-412-5p 0 0 1
chr17:58273448|58275599 hsa-miR-412-3p 0 0 1
chr17:58273448|58275599 hsa-miR-572 1 0 1
chr17:58273448|58275599 hsa-miR-634 0 0 1
chr17:58273448|58275599 hsa-miR-662 1 0 1
chr17:58273448|58275599 hsa-miR-922 0 0 1
chr17:58273448|58275599 hsa-miR-939-5p 0 0 1
chr17:58273448|58275599 hsa-miR-939-3p 0 0 1
chr17:58273448|58275599 hsa-miR-1288-5p 0 0 1
chr17:58273448|58275599 hsa-miR-1288-3p 0 0 1
chr17:58273448|58275599 hsa-miR-671-5p 1 1 1
chr17:58273448|58275599 hsa-miR-532-5p 0 1 1
chr17:58273448|58275599 hsa-miR-331-3p 0 0 1
chr17:58273448|58275599 hsa-miR-324-3p 0 0 1
chr17:58273448|58275599 hsa-miR-1254 0 0 1
chr17:58273448|58275599 hsa-miR-608 1 0 0
chr17:58273448|58275599 hsa-miR-637 1 0 0
chr17:58273448|58275599 hsa-miR-638 1 0 0
chr17:58273448|58275599 hsa-miR-762 1 0 0
chr17:58273448|58275599 hsa-miR-760 1 0 0
chr17:58273448|58275599 hsa-miR-1471 1 0 0
chr17:58273448|58275599 hsa-miR-1538 1 0 0
chr17:58273448|58275599 hsa-miR-1913 0 1 0
chr17:58273448|58275599 hsa-miR-548q 0 1 0
chr17:58273448|58275599 hsa-miR-718 0 1 0
chr17:58273448|58275599 hsa-miR-4447 1 1 0
chr17:58273448|58275599 hsa-miR-4489 0 1 0
chr17:58273448|58275599 hsa-miR-2392 1 0 0
chr17:58273448|58275599 hsa-miR-4648 0 1 0
chr17:58273448|58275599 hsa-miR-4651 1 0 0
chr17:58273448|58275599 hsa-miR-4654 0 1 0
chr17:58273448|58275599 hsa-miR-4689 1 0 0
chr17:58273448|58275599 hsa-miR-4706 1 0 0
chr17:58273448|58275599 hsa-miR-5787 1 0 0
chr17:58273448|58275599 hsa-miR-6072 0 1 0
chr17:58273448|58275599 hsa-miR-9898 0 1 0
chr17:58273448|58275599 hsa-miR-12127 1 0 0
chr17:58273448|58275599 hsa-miR-18a-3p 1 0 0
chr17:58273448|58275599 hsa-miR-4731-5p 0 1 0
chr17:58273448|58275599 hsa-miR-4665-3p 1 0 0
chr17:58273448|58275599 hsa-miR-6747-5p 1 0 0
chr17:58273448|58275599 hsa-miR-3150a-3p 0 1 0
chr17:58273448|58275599 hsa-miR-6857-5p 1 0 0
chr17:58273448|58275599 hsa-miR-6822-3p 0 1 0
chr17:58273448|58275599 hsa-miR-15b-3p 0 1 0
chr17:58273448|58275599 hsa-miR-6728-5p 1 1 0
chr17:58273448|58275599 hsa-miR-1227-5p 0 1 0
chr17:58273448|58275599 hsa-miR-6089 1 0 0
chr17:58273448|58275599 hsa-miR-6757-5p 1 0 0
chr17:58273448|58275599 hsa-miR-6849-3p 1 0 0
chr17:58273448|58275599 hsa-miR-6742-5p 1 0 0
chr17:58273448|58275599 hsa-miR-4655-3p 1 0 0
chr17:58273448|58275599 hsa-miR-2467-5p 1 1 0
chr17:58273448|58275599 hsa-miR-6782-5p 1 0 0
chr17:58273448|58275599 hsa-miR-6774-3p 0 1 0
chr17:58273448|58275599 hsa-miR-6858-3p 1 0 0
chr17:58273448|58275599 hsa-miR-6786-5p 1 0 0
chr17:58273448|58275599 hsa-miR-7109-5p 1 0 0
chr17:58273448|58275599 hsa-miR-4763-5p 1 0 0
chr17:58273448|58275599 hsa-miR-3677-3p 1 1 0
chr17:58273448|58275599 hsa-miR-4638-3p 0 1 0
chr17:58273448|58275599 hsa-miR-149-3p 1 0 0
chr17:58273448|58275599 hsa-miR-339-5p 1 0 0
chr17:58273448|58275599 hsa-miR-1237-3p 0 1 0
chr17:58273448|58275599 hsa-miR-1226-3p 1 0 0
chr17:58273448|58275599 hsa-miR-6785-3p 0 1 0
chr17:58273448|58275599 hsa-miR-6793-3p 1 0 0
chr17:58273448|58275599 hsa-miR-1224-3p 1 0 0
chr17:58273448|58275599 hsa-miR-6752-3p 1 0 0
chr17:58273448|58275599 hsa-miR-6837-3p 0 1 0
chr17:58273448|58275599 hsa-miR-6508-3p 0 1 0
chr17:58273448|58275599 hsa-miR-6865-3p 1 1 0
chr17:58273448|58275599 hsa-miR-6859-3p 1 1 0
chr17:58273448|58275599 hsa-miR-5589-3p 1 0 0
chr17:58273448|58275599 hsa-miR-6748-3p 1 0 0
chr17:58273448|58275599 hsa-miR-3620-3p 1 0 0
chr17:58273448|58275599 hsa-miR-4717-5p 1 0 0
chr17:58273448|58275599 hsa-miR-6798-3p 1 0 0
chr17:58273448|58275599 hsa-miR-6729-3p 1 0 0
chr17:58273448|58275599 hsa-miR-4485-5p 0 1 0
chr17:58273448|58275599 hsa-miR-5585-5p 0 1 0
chr17:58273448|58275599 hsa-miR-6812-5p 1 0 0
chr17:58273448|58275599 hsa-miR-6816-5p 1 0 0
chr17:58273448|58275599 hsa-miR-6870-5p 1 0 0
chr17:58273448|58275599 hsa-miR-1343-5p 1 0 0
chr17:58273448|58275599 hsa-miR-6737-5p 1 0 0
chr17:58273448|58275599 hsa-miR-6756-5p 1 0 0
chr17:58273448|58275599 hsa-miR-6769a-5p 1 0 0
chr17:58273448|58275599 hsa-miR-6803-5p 1 0 0
chr17:58273448|58275599 hsa-miR-6819-5p 1 0 0
chr17:58273448|58275599 hsa-miR-6751-5p 1 0 0
chr17:58273448|58275599 hsa-miR-6763-5p 1 1 0
chr17:58273448|58275599 hsa-miR-6779-5p 1 0 0
chr17:58273448|58275599 hsa-miR-6754-3p 1 1 0
chr17:58273448|58275599 hsa-miR-3620-5p 1 0 0
chr17:58273448|58275599 hsa-miR-4728-5p 1 0 0
chr17:58273448|58275599 hsa-miR-5196-5p 1 0 0
chr17:58273448|58275599 hsa-miR-6780b-5p 1 0 0
chr17:58273448|58275599 hsa-miR-10396b-5p 1 0 0
chr17:58273448|58275599 hsa-miR-4745-5p 1 0 0
chr17:58273448|58275599 hsa-miR-675-5p 1 0 0
chr17:58273448|58275599 hsa-miR-6848-5p 1 0 0
chr17:58273448|58275599 hsa-miR-6845-5p 0 1 0
chr17:58273448|58275599 hsa-miR-3199 0 1 0
chr17:58273448|58275599 hsa-miR-4769-5p 0 1 0
chr17:58273448|58275599 hsa-miR-3940-5p 1 0 0
chr17:58273448|58275599 hsa-miR-1271-3p 1 0 0
chr17:58273448|58275599 hsa-miR-3116 0 1 0
chr17:58273448|58275599 hsa-miR-4472 0 1 0
chr17:58273448|58275599 hsa-miR-2682-3p 1 0 0
chr17:58273448|58275599 hsa-miR-6791-5p 1 0 0
chr17:58273448|58275599 hsa-miR-6762-5p 1 0 0
chr17:58273448|58275599 hsa-miR-4722-3p 1 0 0
chr17:58273448|58275599 hsa-miR-6862-3p 1 0 0
chr17:58273448|58275599 hsa-miR-6891-3p 0 1 0
chr17:58273448|58275599 hsa-miR-7114-3p 0 1 0
chr17:58273448|58275599 hsa-miR-515-3p 0 1 0
chr17:58273448|58275599 hsa-miR-10523-5p 0 1 0
chr17:58273448|58275599 hsa-miR-3913-5p 0 1 0
chr17:58273448|58275599 hsa-miR-580-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:58273448|58275599
ORF Type ORF1
Protein Length 32
Nucleotide Length 99
Protein Sequence MVPIVQAEHEGLDEGVAVAEGIGEDVGDAWVH
Nucleotide Sequence CTGGTACCGATTGTCCAGGCGGAACATGAAGGGTTGGATGAGGGTGTGGCCGTAGCGGAAGGCATTGGTGAAGACGTTGGCGATGCGTGGGTCCACTGA
CircID chr17:58273448|58275599
ORF Type ORF2
Protein Length 29
Nucleotide Length 90
Protein Sequence LLRGTRGLGSMGWYRLSRRNMKGWMRVWP
Nucleotide Sequence CTGCTGAGGGGGACACGGGGGTTGGGTTCCATGGGCTGGTACCGATTGTCCAGGCGGAACATGAAGGGTTGGATGAGGGTGTGGCCGTAG
CircID chr17:58273448|58275599
ORF Type ORF3
Protein Length 54
Nucleotide Length 162
Protein Sequence MPTYRSYNDSVDPRIANVFTNAFRYGHTLIQPFMFRLDNRYQPMEPNPRVPLSR
Nucleotide Sequence CTGCCCACGTACCGTTCCTACAATGACTCAGTGGACCCACGCATCGCCAACGTCTTCACCAATGCCTTCCGCTACGGCCACACCCTCATCCAACCCTTCATGTTCCGCCTGGACAATCGGTACCAGCCCATGGAACCCAACCCCCGTGTCCCCCTCAGCAGG
CircID chr17:58273448|58275599
ORF Type ORF4
Protein Length 46
Nucleotide Length 138
Protein Sequence MTQWTHASPTSSPMPSATATPSSNPSCSAWTIGTSPWNPTPVSPSA
Nucleotide Sequence ATGACTCAGTGGACCCACGCATCGCCAACGTCTTCACCAATGCCTTCCGCTACGGCCACACCCTCATCCAACCCTTCATGTTCCGCCTGGACAATCGGTACCAGCCCATGGAACCCAACCCCCGTGTCCCCCTCAGCA
CircID chr17:58273448|58275599
ORF Type ORF3
Protein Length 28
Nucleotide Length 87
Protein Sequence MSHCRNGTWAGTSSWPLAPAPGAGSPGK
Nucleotide Sequence CTGAGTCATTGTAGGAACGGTACGTGGGCAGGTACTTCCTCATGGCCGTTGGCCCCAGCACCAGGGGCAGGTAGTCCCGGTAAGTGA
CircID chr17:58273448|58275599
ORF Type ORF4
Protein Length 67
Nucleotide Length 201
Protein Sequence MPLVLGPTAMRKYLPTYRSYNDSVDPRIANVFTNAFRYGHTLIQPFMFRLDNRYQPMEPNPRVPLSR
Nucleotide Sequence CTGCCCCTGGTGCTGGGGCCAACGGCCATGAGGAAGTACCTGCCCACGTACCGTTCCTACAATGACTCAGTGGACCCACGCATCGCCAACGTCTTCACCAATGCCTTCCGCTACGGCCACACCCTCATCCAACCCTTCATGTTCCGCCTGGACAATCGGTACCAGCCCATGGAACCCAACCCCCGTGTCCCCCTCAGCAGG
CircID chr17:58273448|58275599
ORF Type ORF5
Protein Length 28
Nucleotide Length 87
Protein Sequence MGRGSTRKPGRSSSLTGTTCPWCWGQRP
Nucleotide Sequence ATGGGGAGAGGCTCTACCAGGAAGCCCGGAAGATCATCATCACTTACCGGGACTACCTGCCCCTGGTGCTGGGGCCAACGGCCATGA
CircID chr17:58273448|58275599
ORF Type ORF6
Protein Length 46
Nucleotide Length 138
Protein Sequence MTQWTHASPTSSPMPSATATPSSNPSCSAWTIGTSPWNPTPVSPSA
Nucleotide Sequence ATGACTCAGTGGACCCACGCATCGCCAACGTCTTCACCAATGCCTTCCGCTACGGCCACACCCTCATCCAACCCTTCATGTTCCGCCTGGACAATCGGTACCAGCCCATGGAACCCAACCCCCGTGTCCCCCTCAGCA
CircID chr17:58273448|58275599
ORF Type ORF4
Protein Length 77
Nucleotide Length 231
Protein Sequence MVQIITYRDYLPLVLGPTAMRKYLPTYRSYNDSVDPRIANVFTNAFRYGHTLIQPFMFRLDNRYQPMEPNPRVPLSR
Nucleotide Sequence ATGGTCCAGATCATCACTTACCGGGACTACCTGCCCCTGGTGCTGGGGCCAACGGCCATGAGGAAGTACCTGCCCACGTACCGTTCCTACAATGACTCAGTGGACCCACGCATCGCCAACGTCTTCACCAATGCCTTCCGCTACGGCCACACCCTCATCCAACCCTTCATGTTCCGCCTGGACAATCGGTACCAGCCCATGGAACCCAACCCCCGTGTCCCCCTCAGCAGG
CircID chr17:58273448|58275599
ORF Type ORF5
Protein Length 34
Nucleotide Length 105
Protein Sequence MGRGSTRKPGRSWGPWSRSSLTGTTCPWCWGQRP
Nucleotide Sequence ATGGGGAGAGGCTCTACCAGGAAGCCCGGAAGATCGTGGGGGCCATGGTCCAGATCATCACTTACCGGGACTACCTGCCCCTGGTGCTGGGGCCAACGGCCATGA
CircID chr17:58273448|58275599
ORF Type ORF5
Protein Length 46
Nucleotide Length 138
Protein Sequence MTQWTHASPTSSPMPSATATPSSNPSCSAWTIGTSPWNPTPVSPSA
Nucleotide Sequence ATGACTCAGTGGACCCACGCATCGCCAACGTCTTCACCAATGCCTTCCGCTACGGCCACACCCTCATCCAACCCTTCATGTTCCGCCTGGACAATCGGTACCAGCCCATGGAACCCAACCCCCGTGTCCCCCTCAGCA
CircID chr17:58273448|58275599
ORF Type ORF3
Protein Length 25
Nucleotide Length 75
Protein Sequence MSHCRNGTWAGTSSWPLAPAPGAVP
Nucleotide Sequence CTGAGTCATTGTAGGAACGGTACGTGGGCAGGTACTTCCTCATGGCCGTTGGCCCCAGCACCAGGGGCAGTCCCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab