CircRNA Information

General Information
circRNA Basic Information
CircID chr17:58280366|58280658
Strand -
CircType exon
Host Gene ENSG00000005381.7;
Algorism CIRI2;
Sequence CTTTCCCGCCGCTCCTTGTAGGCCTTGTCCACCAGCTGCTTGGCCTCCTCCATGGAGCTCAGCACCAACGAGGTGTCCACCTCCCCCAGGACAGCTGCCCAGAGCAGGGATCACAAAGTCAGGAATGGGCCCCAACCCCCTATCAGGCCCCAGAGCTAGGAAGGCCTGCTCTGAGAAAAGGGGTCTCTGGAACACAACCACCCCAACACACCATCTTCTCCCACCTTGGGAACTGTTACCTGGAGCAGCACCTTCAGAGGGCTGGGGCGTGGCCAGAATGGCCAGGAGCCCTG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:58280366|58280658 hsa-miR-18a-5p 0 0 1
chr17:58280366|58280658 hsa-miR-18a-3p 0 0 1
chr17:58280366|58280658 hsa-miR-212-5p 0 0 1
chr17:58280366|58280658 hsa-miR-212-3p 0 0 1
chr17:58280366|58280658 hsa-miR-132-5p 0 0 1
chr17:58280366|58280658 hsa-miR-132-3p 0 0 1
chr17:58280366|58280658 hsa-miR-326 0 1 1
chr17:58280366|58280658 hsa-miR-384 0 0 1
chr17:58280366|58280658 hsa-miR-18b-5p 0 0 1
chr17:58280366|58280658 hsa-miR-18b-3p 0 0 1
chr17:58280366|58280658 hsa-miR-493-5p 0 0 1
chr17:58280366|58280658 hsa-miR-493-3p 0 0 1
chr17:58280366|58280658 hsa-miR-588 0 0 1
chr17:58280366|58280658 hsa-miR-608 1 1 1
chr17:58280366|58280658 hsa-miR-612 1 1 1
chr17:58280366|58280658 hsa-miR-624-5p 0 0 1
chr17:58280366|58280658 hsa-miR-624-3p 0 0 1
chr17:58280366|58280658 hsa-miR-625-5p 0 0 1
chr17:58280366|58280658 hsa-miR-625-3p 0 0 1
chr17:58280366|58280658 hsa-miR-637 0 0 1
chr17:58280366|58280658 hsa-miR-646 0 0 1
chr17:58280366|58280658 hsa-miR-758-5p 0 0 1
chr17:58280366|58280658 hsa-miR-758-3p 0 0 1
chr17:58280366|58280658 hsa-miR-765 0 0 1
chr17:58280366|58280658 hsa-miR-1200 0 0 1
chr17:58280366|58280658 hsa-miR-1293 0 0 1
chr17:58280366|58280658 hsa-miR-1253 0 0 1
chr17:58280366|58280658 hsa-miR-1275 0 0 1
chr17:58280366|58280658 hsa-miR-1306-5p 0 0 1
chr17:58280366|58280658 hsa-miR-1306-3p 0 0 1
chr17:58280366|58280658 hsa-miR-525-5p 0 0 1
chr17:58280366|58280658 hsa-miR-1207-3p 0 0 1
chr17:58280366|58280658 hsa-miR-876-3p 0 0 1
chr17:58280366|58280658 hsa-miR-342-5p 0 0 1
chr17:58280366|58280658 hsa-miR-520a-5p 0 0 1
chr17:58280366|58280658 hsa-miR-330-5p 0 1 1
chr17:58280366|58280658 hsa-miR-138 0 0 1
chr17:58280366|58280658 hsa-miR-1285 0 0 1
chr17:58280366|58280658 hsa-miR-453 0 0 1
chr17:58280366|58280658 hsa-miR-1201 0 0 1
chr17:58280366|58280658 hsa-miR-194 0 0 1
chr17:58280366|58280658 hsa-miR-762 1 0 0
chr17:58280366|58280658 hsa-miR-760 1 0 0
chr17:58280366|58280658 hsa-miR-1261 1 0 0
chr17:58280366|58280658 hsa-miR-2861 0 1 0
chr17:58280366|58280658 hsa-miR-3138 1 1 0
chr17:58280366|58280658 hsa-miR-3142 0 1 0
chr17:58280366|58280658 hsa-miR-4297 0 1 0
chr17:58280366|58280658 hsa-miR-4260 1 0 0
chr17:58280366|58280658 hsa-miR-4278 0 1 0
chr17:58280366|58280658 hsa-miR-4507 1 0 0
chr17:58280366|58280658 hsa-miR-4647 0 1 0
chr17:58280366|58280658 hsa-miR-4651 0 1 0
chr17:58280366|58280658 hsa-miR-4663 1 1 0
chr17:58280366|58280658 hsa-miR-4682 1 1 0
chr17:58280366|58280658 hsa-miR-4739 1 0 0
chr17:58280366|58280658 hsa-miR-4741 1 0 0
chr17:58280366|58280658 hsa-miR-5572 1 0 0
chr17:58280366|58280658 hsa-miR-6860 0 1 0
chr17:58280366|58280658 hsa-miR-8072 0 1 0
chr17:58280366|58280658 hsa-miR-8089 1 0 0
chr17:58280366|58280658 hsa-miR-370-3p 1 0 0
chr17:58280366|58280658 hsa-miR-92a-1-5p 0 1 0
chr17:58280366|58280658 hsa-miR-128-1-5p 1 0 0
chr17:58280366|58280658 hsa-miR-7155-5p 1 0 0
chr17:58280366|58280658 hsa-miR-6825-5p 0 1 0
chr17:58280366|58280658 hsa-miR-125a-3p 1 0 0
chr17:58280366|58280658 hsa-miR-6799-5p 0 1 0
chr17:58280366|58280658 hsa-miR-8071 1 0 0
chr17:58280366|58280658 hsa-miR-6804-5p 1 0 0
chr17:58280366|58280658 hsa-miR-1227-5p 1 0 0
chr17:58280366|58280658 hsa-miR-6089 1 0 0
chr17:58280366|58280658 hsa-miR-769-5p 0 1 0
chr17:58280366|58280658 hsa-miR-6746-5p 1 0 0
chr17:58280366|58280658 hsa-miR-1301-3p 1 1 0
chr17:58280366|58280658 hsa-miR-3187-3p 0 1 0
chr17:58280366|58280658 hsa-miR-23b-5p 1 1 0
chr17:58280366|58280658 hsa-miR-8069 1 0 0
chr17:58280366|58280658 hsa-miR-6742-5p 1 0 0
chr17:58280366|58280658 hsa-miR-6760-5p 1 0 0
chr17:58280366|58280658 hsa-miR-6782-5p 1 0 0
chr17:58280366|58280658 hsa-miR-615-5p 1 0 0
chr17:58280366|58280658 hsa-miR-7109-5p 1 0 0
chr17:58280366|58280658 hsa-miR-1226-5p 1 0 0
chr17:58280366|58280658 hsa-miR-1229-5p 1 1 0
chr17:58280366|58280658 hsa-miR-4640-5p 1 0 0
chr17:58280366|58280658 hsa-miR-30c-2-3p 0 1 0
chr17:58280366|58280658 hsa-miR-3667-3p 0 1 0
chr17:58280366|58280658 hsa-miR-6749-5p 1 0 0
chr17:58280366|58280658 hsa-miR-4743-5p 1 0 0
chr17:58280366|58280658 hsa-miR-378a-5p 0 1 0
chr17:58280366|58280658 hsa-miR-6824-5p 1 0 0
chr17:58280366|58280658 hsa-miR-194-5p 0 1 0
chr17:58280366|58280658 hsa-miR-4776-5p 1 0 0
chr17:58280366|58280658 hsa-miR-3190-5p 0 1 0
chr17:58280366|58280658 hsa-miR-3180-5p 0 1 0
chr17:58280366|58280658 hsa-miR-500a-5p 1 0 0
chr17:58280366|58280658 hsa-miR-6814-5p 0 1 0
chr17:58280366|58280658 hsa-miR-6501-3p 0 1 0
chr17:58280366|58280658 hsa-miR-6846-3p 0 1 0
chr17:58280366|58280658 hsa-miR-4650-5p 0 1 0
chr17:58280366|58280658 hsa-miR-1233-5p 1 0 0
chr17:58280366|58280658 hsa-miR-4763-3p 1 0 0
chr17:58280366|58280658 hsa-miR-6778-5p 0 1 0
chr17:58280366|58280658 hsa-miR-6870-5p 0 1 0
chr17:58280366|58280658 hsa-miR-6737-5p 1 1 0
chr17:58280366|58280658 hsa-miR-6752-5p 1 0 0
chr17:58280366|58280658 hsa-miR-6756-5p 1 0 0
chr17:58280366|58280658 hsa-miR-6803-5p 1 0 0
chr17:58280366|58280658 hsa-miR-6815-5p 1 0 0
chr17:58280366|58280658 hsa-miR-6819-5p 1 1 0
chr17:58280366|58280658 hsa-miR-6851-5p 1 1 0
chr17:58280366|58280658 hsa-miR-1249-5p 1 0 0
chr17:58280366|58280658 hsa-miR-6788-5p 1 1 0
chr17:58280366|58280658 hsa-miR-7111-5p 1 1 0
chr17:58280366|58280658 hsa-miR-5189-5p 0 1 0
chr17:58280366|58280658 hsa-miR-6780b-5p 1 0 0
chr17:58280366|58280658 hsa-miR-328-5p 1 0 0
chr17:58280366|58280658 hsa-miR-4632-5p 1 0 0
chr17:58280366|58280658 hsa-miR-4725-3p 1 0 0
chr17:58280366|58280658 hsa-miR-6848-5p 1 0 0
chr17:58280366|58280658 hsa-miR-3187-5p 0 1 0
chr17:58280366|58280658 hsa-miR-939-5p 1 0 0
chr17:58280366|58280658 hsa-miR-3940-5p 1 0 0
chr17:58280366|58280658 hsa-miR-30c-1-3p 0 1 0
chr17:58280366|58280658 hsa-miR-4665-5p 0 1 0
chr17:58280366|58280658 hsa-miR-6766-5p 0 1 0
chr17:58280366|58280658 hsa-miR-3689d 0 1 0
chr17:58280366|58280658 hsa-miR-6849-5p 1 0 0
chr17:58280366|58280658 hsa-miR-6791-5p 1 0 0
chr17:58280366|58280658 hsa-miR-6762-5p 1 0 0
chr17:58280366|58280658 hsa-miR-10400-3p 0 1 0
chr17:58280366|58280658 hsa-miR-6837-5p 1 0 0
chr17:58280366|58280658 hsa-miR-4701-5p 0 1 0
chr17:58280366|58280658 hsa-miR-128-2-5p 1 0 0
chr17:58280366|58280658 hsa-miR-4661-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:58280366|58280658
ORF Type ORF1
Protein Length 44
Nucleotide Length 135
Protein Sequence MSTSCLASSMELSTNEVSTSPRTAAQSRDHKVRNGPQPPIRPQS
Nucleotide Sequence TTGTCCACCAGCTGCTTGGCCTCCTCCATGGAGCTCAGCACCAACGAGGTGTCCACCTCCCCCAGGACAGCTGCCCAGAGCAGGGATCACAAAGTCAGGAATGGGCCCCAACCCCCTATCAGGCCCCAGAGCTAG
CircID chr17:58280366|58280658
ORF Type ORF2
Protein Length 35
Nucleotide Length 105
Protein Sequence MEHNHPNTPSSPTLGTVTWSSTFRGLGRGQNGQEP
Nucleotide Sequence CTGGAACACAACCACCCCAACACACCATCTTCTCCCACCTTGGGAACTGTTACCTGGAGCAGCACCTTCAGAGGGCTGGGGCGTGGCCAGAATGGCCAGGAGCCC
CircID chr17:58280366|58280658
ORF Type ORF3
Protein Length 66
Nucleotide Length 198
Protein Sequence MPRAGITKSGMGPNPLSGPRARKACSEKRGLWNTTTPTHHLLPPWELLPGAAPSEGWGVARMARSP
Nucleotide Sequence CTGCCCAGAGCAGGGATCACAAAGTCAGGAATGGGCCCCAACCCCCTATCAGGCCCCAGAGCTAGGAAGGCCTGCTCTGAGAAAAGGGGTCTCTGGAACACAACCACCCCAACACACCATCTTCTCCCACCTTGGGAACTGTTACCTGGAGCAGCACCTTCAGAGGGCTGGGGCGTGGCCAGAATGGCCAGGAGCCCT
CircID chr17:58280366|58280658
ORF Type ORF4
Protein Length 86
Nucleotide Length 258
Protein Sequence MLGLLHGAQHQRGVHLPQDSCPEQGSQSQEWAPTPYQAPELGRPALRKGVSGTQPPQHTIFSHLGNCYLEQHLQRAGAWPEWPGAL
Nucleotide Sequence CTGCTTGGCCTCCTCCATGGAGCTCAGCACCAACGAGGTGTCCACCTCCCCCAGGACAGCTGCCCAGAGCAGGGATCACAAAGTCAGGAATGGGCCCCAACCCCCTATCAGGCCCCAGAGCTAGGAAGGCCTGCTCTGAGAAAAGGGGTCTCTGGAACACAACCACCCCAACACACCATCTTCTCCCACCTTGGGAACTGTTACCTGGAGCAGCACCTTCAGAGGGCTGGGGCGTGGCCAGAATGGCCAGGAGCCCTG
CircID chr17:58280366|58280658
ORF Type ORF5
Protein Length 33
Nucleotide Length 102
Protein Sequence MKVLLQVTVPKVGEDGVLGWLCSRDPFSQSRPS
Nucleotide Sequence CTGAAGGTGCTGCTCCAGGTAACAGTTCCCAAGGTGGGAGAAGATGGTGTGTTGGGGTGGTTGTGTTCCAGAGACCCCTTTTCTCAGAGCAGGCCTTCCTAG
CircID chr17:58280366|58280658
ORF Type ORF6
Protein Length 35
Nucleotide Length 105
Protein Sequence MLWAAVLGEVDTSLVLSSMEEAKQLVDKAYKERRE
Nucleotide Sequence CTGCTCTGGGCAGCTGTCCTGGGGGAGGTGGACACCTCGTTGGTGCTGAGCTCCATGGAGGAGGCCAAGCAGCTGGTGGACAAGGCCTACAAGGAGCGGCGGGAA
CircID chr17:58280366|58280658
ORF Type ORF7
Protein Length 95
Nucleotide Length 285
Protein Sequence MAILATPQPSEGAAPGNSSQGGRRWCVGVVVFQRPLFSEQAFLALGPDRGLGPIPDFVIPALGSCPGGGGHLVGAELHGGGQAAGGQGLQGAAGK
Nucleotide Sequence CTGGCCATTCTGGCCACGCCCCAGCCCTCTGAAGGTGCTGCTCCAGGTAACAGTTCCCAAGGTGGGAGAAGATGGTGTGTTGGGGTGGTTGTGTTCCAGAGACCCCTTTTCTCAGAGCAGGCCTTCCTAGCTCTGGGGCCTGATAGGGGGTTGGGGCCCATTCCTGACTTTGTGATCCCTGCTCTGGGCAGCTGTCCTGGGGGAGGTGGACACCTCGTTGGTGCTGAGCTCCATGGAGGAGGCCAAGCAGCTGGTGGACAAGGCCTACAAGGAGCGGCGGGAAAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab