CircRNA Information

General Information
circRNA Basic Information
CircID chr17:58280695|58280838
Strand -
CircType exon
Host Gene ENSG00000005381.7;
Algorism CIRI2;
Sequence CCCCAGCCCAGCAAGGTCCTAAGTCCACCATGCATCTGAGAGAAGAGAAGAAGGGAACCCCCATCTCTCTTCTCCTGGGCTGCTCAATCCCCCTTTGTACCTCAGCCCCACCTCAGAGGGCCCTGTCTATGGATAAAGCCAGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:58280695|58280838 hsa-let-7b-5p 0 0 1
chr17:58280695|58280838 hsa-let-7b-3p 0 0 1
chr17:58280695|58280838 hsa-let-7c-5p 0 0 1
chr17:58280695|58280838 hsa-let-7c-3p 0 0 1
chr17:58280695|58280838 hsa-let-7d-5p 0 0 1
chr17:58280695|58280838 hsa-let-7d-3p 0 0 1
chr17:58280695|58280838 hsa-let-7e-5p 0 0 1
chr17:58280695|58280838 hsa-let-7e-3p 0 0 1
chr17:58280695|58280838 hsa-miR-98-5p 0 0 1
chr17:58280695|58280838 hsa-miR-98-3p 0 0 1
chr17:58280695|58280838 hsa-miR-204-5p 0 0 1
chr17:58280695|58280838 hsa-miR-204-3p 0 0 1
chr17:58280695|58280838 hsa-miR-211-5p 0 0 1
chr17:58280695|58280838 hsa-miR-211-3p 0 0 1
chr17:58280695|58280838 hsa-let-7g-5p 0 0 1
chr17:58280695|58280838 hsa-let-7g-3p 0 0 1
chr17:58280695|58280838 hsa-let-7i-5p 0 0 1
chr17:58280695|58280838 hsa-let-7i-3p 0 0 1
chr17:58280695|58280838 hsa-miR-149-5p 0 0 1
chr17:58280695|58280838 hsa-miR-149-3p 0 0 1
chr17:58280695|58280838 hsa-miR-202-5p 0 0 1
chr17:58280695|58280838 hsa-miR-202-3p 0 0 1
chr17:58280695|58280838 hsa-miR-623 0 0 1
chr17:58280695|58280838 hsa-miR-665 0 0 1
chr17:58280695|58280838 hsa-miR-942-5p 0 0 1
chr17:58280695|58280838 hsa-miR-942-3p 0 0 1
chr17:58280695|58280838 hsa-miR-1236-5p 0 0 1
chr17:58280695|58280838 hsa-miR-1236-3p 0 0 1
chr17:58280695|58280838 hsa-miR-1248 0 0 1
chr17:58280695|58280838 hsa-miR-1253 0 0 1
chr17:58280695|58280838 hsa-miR-524-5p 0 0 1
chr17:58280695|58280838 hsa-miR-520d-5p 0 0 1
chr17:58280695|58280838 hsa-let-7a 0 0 1
chr17:58280695|58280838 hsa-let-7f 0 0 1
chr17:58280695|58280838 hsa-miR-608 1 0 0
chr17:58280695|58280838 hsa-miR-762 1 1 0
chr17:58280695|58280838 hsa-miR-4257 1 0 0
chr17:58280695|58280838 hsa-miR-4437 1 0 0
chr17:58280695|58280838 hsa-miR-4525 0 1 0
chr17:58280695|58280838 hsa-miR-1587 0 1 0
chr17:58280695|58280838 hsa-miR-4651 1 0 0
chr17:58280695|58280838 hsa-miR-4656 1 1 0
chr17:58280695|58280838 hsa-miR-4741 1 0 0
chr17:58280695|58280838 hsa-miR-5685 0 1 0
chr17:58280695|58280838 hsa-miR-5787 1 1 0
chr17:58280695|58280838 hsa-miR-6085 1 0 0
chr17:58280695|58280838 hsa-miR-8058 0 1 0
chr17:58280695|58280838 hsa-miR-92a-2-5p 0 1 0
chr17:58280695|58280838 hsa-miR-6765-5p 1 0 0
chr17:58280695|58280838 hsa-miR-6857-5p 0 1 0
chr17:58280695|58280838 hsa-miR-4768-3p 0 1 0
chr17:58280695|58280838 hsa-miR-6880-5p 1 0 0
chr17:58280695|58280838 hsa-miR-6746-5p 0 1 0
chr17:58280695|58280838 hsa-miR-7160-5p 0 1 0
chr17:58280695|58280838 hsa-miR-197-5p 1 0 0
chr17:58280695|58280838 hsa-miR-6832-3p 0 1 0
chr17:58280695|58280838 hsa-miR-6798-5p 1 0 0
chr17:58280695|58280838 hsa-miR-6782-5p 1 0 0
chr17:58280695|58280838 hsa-miR-6821-5p 1 0 0
chr17:58280695|58280838 hsa-miR-6740-3p 0 1 0
chr17:58280695|58280838 hsa-miR-6786-5p 1 0 0
chr17:58280695|58280838 hsa-miR-6809-3p 0 1 0
chr17:58280695|58280838 hsa-miR-4787-5p 1 0 0
chr17:58280695|58280838 hsa-miR-5010-5p 0 1 0
chr17:58280695|58280838 hsa-miR-7162-3p 0 1 0
chr17:58280695|58280838 hsa-miR-4778-3p 0 1 0
chr17:58280695|58280838 hsa-miR-5088-3p 0 1 0
chr17:58280695|58280838 hsa-miR-4524b-3p 0 1 0
chr17:58280695|58280838 hsa-miR-6769b-5p 1 0 0
chr17:58280695|58280838 hsa-miR-6812-5p 1 0 0
chr17:58280695|58280838 hsa-miR-5001-5p 0 1 0
chr17:58280695|58280838 hsa-miR-6737-5p 1 0 0
chr17:58280695|58280838 hsa-miR-6756-5p 1 1 0
chr17:58280695|58280838 hsa-miR-6769a-5p 1 0 0
chr17:58280695|58280838 hsa-miR-6803-5p 1 0 0
chr17:58280695|58280838 hsa-miR-6813-5p 1 0 0
chr17:58280695|58280838 hsa-miR-6819-5p 1 0 0
chr17:58280695|58280838 hsa-miR-6751-5p 1 0 0
chr17:58280695|58280838 hsa-miR-6866-3p 0 1 0
chr17:58280695|58280838 hsa-miR-3620-5p 0 1 0
chr17:58280695|58280838 hsa-miR-10526-3p 0 1 0
chr17:58280695|58280838 hsa-miR-4685-5p 0 1 0
chr17:58280695|58280838 hsa-miR-4745-5p 1 0 0
chr17:58280695|58280838 hsa-miR-6794-5p 0 1 0
chr17:58280695|58280838 hsa-miR-6846-5p 1 0 0
chr17:58280695|58280838 hsa-miR-6858-5p 1 0 0
chr17:58280695|58280838 hsa-miR-6855-5p 1 1 0
chr17:58280695|58280838 hsa-miR-3085-3p 1 0 0
chr17:58280695|58280838 hsa-miR-4768-5p 0 1 0
chr17:58280695|58280838 hsa-miR-4690-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:58280695|58280838
ORF Type ORF1
Protein Length 38
Nucleotide Length 114
Protein Sequence MHLREEKKGTPISLLLGCSIPLCTSAPPQRALSMDKAR
Nucleotide Sequence ATGCATCTGAGAGAAGAGAAGAAGGGAACCCCCATCTCTCTTCTCCTGGGCTGCTCAATCCCCCTTTGTACCTCAGCCCCACCTCAGAGGGCCCTGTCTATGGATAAAGCCAGA
CircID chr17:58280695|58280838
ORF Type ORF2
Protein Length 28
Nucleotide Length 87
Protein Sequence MRYKGGLSSPGEERWGFPSSLLSDAWWT
Nucleotide Sequence CTGAGGTACAAAGGGGGATTGAGCAGCCCAGGAGAAGAGAGATGGGGGTTCCCTTCTTCTCTTCTCTCAGATGCATGGTGGACTTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab