CircRNA Information

General Information
circRNA Basic Information
CircID chr17:58310723|58310903
Strand +
CircType exon
Host Gene ENSG00000005379.14;
Algorism CIRI2;
Sequence CCCCTGCAAGCCCTTCCAGAGAGATGGCAAAAGGGTCCCACGAGGACCCTCCAGCACCTTGCTCCCAGGTACCCTGTCTGGGGAGAGGGGAGCAGGTGCAGGCTGGCAGAGGGACCTGGGCTTGGGTCCTTCCTCAGTGCTCTCTGTTCCAGGAGGAGGCTGGGGCAGCAGTGCTGGGCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:58310723|58310903 hsa-miR-18a-5p 0 0 1
chr17:58310723|58310903 hsa-miR-18a-3p 0 0 1
chr17:58310723|58310903 hsa-miR-326 0 0 1
chr17:58310723|58310903 hsa-miR-18b-5p 0 0 1
chr17:58310723|58310903 hsa-miR-18b-3p 0 0 1
chr17:58310723|58310903 hsa-miR-596 0 1 1
chr17:58310723|58310903 hsa-miR-619-5p 0 0 1
chr17:58310723|58310903 hsa-miR-619-3p 0 0 1
chr17:58310723|58310903 hsa-miR-920 0 0 1
chr17:58310723|58310903 hsa-miR-1202 0 1 1
chr17:58310723|58310903 hsa-miR-1287-5p 0 0 1
chr17:58310723|58310903 hsa-miR-1287-3p 0 0 1
chr17:58310723|58310903 hsa-miR-1299 0 0 1
chr17:58310723|58310903 hsa-miR-1324 0 0 1
chr17:58310723|58310903 hsa-miR-875-3p 0 0 1
chr17:58310723|58310903 hsa-miR-324-3p 0 0 1
chr17:58310723|58310903 hsa-miR-330-5p 0 0 1
chr17:58310723|58310903 hsa-miR-642 0 0 1
chr17:58310723|58310903 hsa-miR-1913 0 1 0
chr17:58310723|58310903 hsa-miR-4327 0 1 0
chr17:58310723|58310903 hsa-miR-3135b 0 1 0
chr17:58310723|58310903 hsa-miR-4476 0 1 0
chr17:58310723|58310903 hsa-miR-6090 0 1 0
chr17:58310723|58310903 hsa-miR-4726-3p 1 1 0
chr17:58310723|58310903 hsa-miR-6892-3p 0 1 0
chr17:58310723|58310903 hsa-miR-7851-3p 0 1 0
chr17:58310723|58310903 hsa-miR-3192-5p 0 1 0
chr17:58310723|58310903 hsa-miR-6849-3p 0 1 0
chr17:58310723|58310903 hsa-miR-6832-3p 0 1 0
chr17:58310723|58310903 hsa-miR-6868-3p 0 1 0
chr17:58310723|58310903 hsa-miR-6882-3p 1 1 0
chr17:58310723|58310903 hsa-miR-615-3p 1 1 0
chr17:58310723|58310903 hsa-miR-6763-3p 1 0 0
chr17:58310723|58310903 hsa-miR-3677-3p 0 1 0
chr17:58310723|58310903 hsa-miR-211-5p 0 1 0
chr17:58310723|58310903 hsa-miR-660-3p 0 1 0
chr17:58310723|58310903 hsa-miR-6804-3p 0 1 0
chr17:58310723|58310903 hsa-miR-6828-3p 0 1 0
chr17:58310723|58310903 hsa-miR-383-3p 0 1 0
chr17:58310723|58310903 hsa-miR-2276-5p 0 1 0
chr17:58310723|58310903 hsa-miR-2355-5p 0 1 0
chr17:58310723|58310903 hsa-miR-6826-3p 0 1 0
chr17:58310723|58310903 hsa-miR-518c-5p 0 1 0
chr17:58310723|58310903 hsa-miR-204-5p 0 1 0
chr17:58310723|58310903 hsa-miR-4727-5p 0 1 0
chr17:58310723|58310903 hsa-miR-642a-5p 0 1 0
chr17:58310723|58310903 hsa-miR-6841-5p 0 1 0
chr17:58310723|58310903 hsa-miR-1207-5p 0 1 0
chr17:58310723|58310903 hsa-miR-4763-3p 1 0 0
chr17:58310723|58310903 hsa-miR-6808-5p 0 1 0
chr17:58310723|58310903 hsa-miR-6875-5p 0 1 0
chr17:58310723|58310903 hsa-miR-939-5p 0 1 0
chr17:58310723|58310903 hsa-miR-6799-3p 1 0 0
chr17:58310723|58310903 hsa-miR-6876-5p 0 1 0
chr17:58310723|58310903 hsa-miR-10398-5p 0 1 0
chr17:58310723|58310903 hsa-miR-6810-3p 0 1 0
chr17:58310723|58310903 hsa-miR-6829-3p 0 1 0
chr17:58310723|58310903 hsa-miR-450b-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr17:58310723|58310903
ORF Type ORF1
Protein Length 59
Nucleotide Length 177
Protein Sequence MQALPERWQKGPTRTLQHLAPRYPVWGEGSRCRLAEGPGLGSFLSALCSRRRLGQQCWA
Nucleotide Sequence CTGCAAGCCCTTCCAGAGAGATGGCAAAAGGGTCCCACGAGGACCCTCCAGCACCTTGCTCCCAGGTACCCTGTCTGGGGAGAGGGGAGCAGGTGCAGGCTGGCAGAGGGACCTGGGCTTGGGTCCTTCCTCAGTGCTCTCTGTTCCAGGAGGAGGCTGGGGCAGCAGTGCTGGGCA
CircID chr17:58310723|58310903
ORF Type ORF2
Protein Length 41
Nucleotide Length 123
Protein Sequence MLPGTLSGERGAGAGWQRDLGLGPSSVLSVPGGGWGSSAGH
Nucleotide Sequence TTGCTCCCAGGTACCCTGTCTGGGGAGAGGGGAGCAGGTGCAGGCTGGCAGAGGGACCTGGGCTTGGGTCCTTCCTCAGTGCTCTCTGTTCCAGGAGGAGGCTGGGGCAGCAGTGCTGGGCAC
CircID chr17:58310723|58310903
ORF Type ORF3
Protein Length 52
Nucleotide Length 156
Protein Sequence MAKGSHEDPPAPCSQVPCLGRGEQVQAGRGTWAWVLPQCSLFQEEAGAAVLG
Nucleotide Sequence ATGGCAAAAGGGTCCCACGAGGACCCTCCAGCACCTTGCTCCCAGGTACCCTGTCTGGGGAGAGGGGAGCAGGTGCAGGCTGGCAGAGGGACCTGGGCTTGGGTCCTTCCTCAGTGCTCTCTGTTCCAGGAGGAGGCTGGGGCAGCAGTGCTGGGC
CircID chr17:58310723|58310903
ORF Type ORF4
Protein Length 36
Nucleotide Length 108
Protein Sequence MPACTCSPLPRQGTWEQGAGGSSWDPFAISLEGLAG
Nucleotide Sequence CTGCCAGCCTGCACCTGCTCCCCTCTCCCCAGACAGGGTACCTGGGAGCAAGGTGCTGGAGGGTCCTCGTGGGACCCTTTTGCCATCTCTCTGGAAGGGCTTGCAGGG
CircID chr17:58310723|58310903
ORF Type ORF5
Protein Length 57
Nucleotide Length 171
Protein Sequence MLPQPPPGTESTEEGPKPRSLCQPAPAPLSPDRVPGSKVLEGPRGTLLPSLWKGLQG
Nucleotide Sequence CTGCTGCCCCAGCCTCCTCCTGGAACAGAGAGCACTGAGGAAGGACCCAAGCCCAGGTCCCTCTGCCAGCCTGCACCTGCTCCCCTCTCCCCAGACAGGGTACCTGGGAGCAAGGTGCTGGAGGGTCCTCGTGGGACCCTTTTGCCATCTCTCTGGAAGGGCTTGCAGGGG
CircID chr17:58310723|58310903
ORF Type ORF6
Protein Length 50
Nucleotide Length 150
Protein Sequence MEQRALRKDPSPGPSASLHLLPSPQTGYLGARCWRVLVGPFCHLSGRACR
Nucleotide Sequence CTGGAACAGAGAGCACTGAGGAAGGACCCAAGCCCAGGTCCCTCTGCCAGCCTGCACCTGCTCCCCTCTCCCCAGACAGGGTACCTGGGAGCAAGGTGCTGGAGGGTCCTCGTGGGACCCTTTTGCCATCTCTCTGGAAGGGCTTGCAGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab