CircRNA Information

General Information
circRNA Basic Information
CircID chr17:58354776|58354933
Strand -
CircType exon
Host Gene ENSG00000108375.11;
Algorism CIRI2;
Sequence CCTCTCACCCTCCACCATCACCAGTCCTCTTCCAGTGCTTCTAGGAAGTACGGCAAAAAGAATGGTGTTTGCTGTGGTCCTTTCCTTTCCCAGGAGCAGGACTCTGTGCCAGGTAGGGCCCAAACACATCTGGAGCACACTCTTGGTTGGAGCTAGGC
circRNA Expression in different cancers

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circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:58354776|58354933 hsa-miR-370-5p 0 0 1
chr17:58354776|58354933 hsa-miR-370-3p 0 0 1
chr17:58354776|58354933 hsa-miR-384 0 0 1
chr17:58354776|58354933 hsa-miR-545-5p 0 0 1
chr17:58354776|58354933 hsa-miR-545-3p 0 0 1
chr17:58354776|58354933 hsa-miR-619-5p 0 0 1
chr17:58354776|58354933 hsa-miR-619-3p 0 0 1
chr17:58354776|58354933 hsa-miR-648 0 0 1
chr17:58354776|58354933 hsa-miR-129-5p 0 0 1
chr17:58354776|58354933 hsa-miR-296-5p 0 0 1
chr17:58354776|58354933 hsa-miR-574-5p 0 1 1
chr17:58354776|58354933 hsa-miR-576-3p 0 0 1
chr17:58354776|58354933 hsa-miR-140-3p 0 1 1
chr17:58354776|58354933 hsa-miR-7 0 0 1
chr17:58354776|58354933 hsa-miR-608 1 0 0
chr17:58354776|58354933 hsa-miR-762 1 0 0
chr17:58354776|58354933 hsa-miR-765 1 0 0
chr17:58354776|58354933 hsa-miR-2861 1 0 0
chr17:58354776|58354933 hsa-miR-3131 1 0 0
chr17:58354776|58354933 hsa-miR-3141 1 0 0
chr17:58354776|58354933 hsa-miR-3153 0 1 0
chr17:58354776|58354933 hsa-miR-3907 1 0 0
chr17:58354776|58354933 hsa-miR-4475 0 1 0
chr17:58354776|58354933 hsa-miR-2392 1 0 0
chr17:58354776|58354933 hsa-miR-1587 1 0 0
chr17:58354776|58354933 hsa-miR-4721 1 0 0
chr17:58354776|58354933 hsa-miR-5192 1 0 0
chr17:58354776|58354933 hsa-miR-5787 1 0 0
chr17:58354776|58354933 hsa-miR-6124 1 0 0
chr17:58354776|58354933 hsa-miR-8052 1 0 0
chr17:58354776|58354933 hsa-miR-8073 0 1 0
chr17:58354776|58354933 hsa-miR-8085 1 0 0
chr17:58354776|58354933 hsa-miR-134-5p 1 0 0
chr17:58354776|58354933 hsa-miR-4433b-3p 1 0 0
chr17:58354776|58354933 hsa-miR-671-5p 1 0 0
chr17:58354776|58354933 hsa-miR-6822-3p 1 0 0
chr17:58354776|58354933 hsa-miR-8071 1 0 0
chr17:58354776|58354933 hsa-miR-6515-5p 0 1 0
chr17:58354776|58354933 hsa-miR-6880-5p 0 1 0
chr17:58354776|58354933 hsa-miR-7847-3p 1 1 0
chr17:58354776|58354933 hsa-miR-3189-5p 1 0 0
chr17:58354776|58354933 hsa-miR-1288-3p 1 0 0
chr17:58354776|58354933 hsa-miR-6716-5p 1 0 0
chr17:58354776|58354933 hsa-miR-1292-5p 1 0 0
chr17:58354776|58354933 hsa-miR-6829-5p 1 0 0
chr17:58354776|58354933 hsa-miR-1224-5p 1 0 0
chr17:58354776|58354933 hsa-miR-6782-5p 1 0 0
chr17:58354776|58354933 hsa-miR-204-3p 0 1 0
chr17:58354776|58354933 hsa-miR-6847-5p 1 0 0
chr17:58354776|58354933 hsa-miR-4446-3p 1 0 0
chr17:58354776|58354933 hsa-miR-5584-5p 0 1 0
chr17:58354776|58354933 hsa-miR-6866-5p 0 1 0
chr17:58354776|58354933 hsa-miR-6838-3p 0 1 0
chr17:58354776|58354933 hsa-miR-221-5p 0 1 0
chr17:58354776|58354933 hsa-miR-1207-5p 1 0 0
chr17:58354776|58354933 hsa-miR-4763-3p 1 0 0
chr17:58354776|58354933 hsa-miR-5001-5p 1 0 0
chr17:58354776|58354933 hsa-miR-6788-5p 1 1 0
chr17:58354776|58354933 hsa-miR-6879-5p 1 0 0
chr17:58354776|58354933 hsa-miR-3620-5p 1 0 0
chr17:58354776|58354933 hsa-miR-4728-5p 0 1 0
chr17:58354776|58354933 hsa-miR-5196-5p 1 0 0
chr17:58354776|58354933 hsa-miR-6858-5p 1 0 0
chr17:58354776|58354933 hsa-miR-30c-1-3p 0 1 0
chr17:58354776|58354933 hsa-miR-6731-5p 1 1 0
chr17:58354776|58354933 hsa-miR-6739-5p 0 1 0
chr17:58354776|58354933 hsa-miR-6799-3p 1 0 0
chr17:58354776|58354933 hsa-miR-4646-5p 0 1 0
chr17:58354776|58354933 hsa-miR-6724-5p 1 1 0
chr17:58354776|58354933 hsa-miR-9983-3p 0 1 0
chr17:58354776|58354933 hsa-miR-21-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:58354776|58354933
ORF Type ORF1
Protein Length 32
Nucleotide Length 96
Protein Sequence MVFAVVLSFPRSRTLCQVGPKHIWSTLLVGAR
Nucleotide Sequence ATGGTGTTTGCTGTGGTCCTTTCCTTTCCCAGGAGCAGGACTCTGTGCCAGGTAGGGCCCAAACACATCTGGAGCACACTCTTGGTTGGAGCTAGG
CircID chr17:58354776|58354933
ORF Type ORF2
Protein Length 43
Nucleotide Length 129
Protein Sequence MCLGPTWHRVLLLGKERTTANTILFAVLPRSTGRGLVMVEGER
Nucleotide Sequence ATGTGTTTGGGCCCTACCTGGCACAGAGTCCTGCTCCTGGGAAAGGAAAGGACCACAGCAAACACCATTCTTTTTGCCGTACTTCCTAGAAGCACTGGAAGAGGACTGGTGATGGTGGAGGGTGAGAGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab