CircRNA Information

General Information
circRNA Basic Information
CircID chr17:58521254|58521580
Strand -
CircType exon
Host Gene ENSG00000108387.13;
Algorism CIRI2;
Sequence CTTCCACGATGCCCCAGGGGTAGAGTCGACCCCGAACTCGCCGCCCTCTGGCCTCTACTACAGTGTTGCTGCCAATTACTGCAAATGGGATGCTTTCCTGGAAGAGGTTAGGGGTGCCTGTCAGCACCCTCTGTTCTCACCTCTTTCTTTCCACCTGTATCGTCATCTTCTCTGCTTCATTCTAGGAAGCCAGGGTCCTTTCCCACCCTGATAGCCTGAATATAGAATTCTACTCCCTTTTTCTACCCGGAAGAAATAAGATAGGAATGGGATGCCCTAGAGTGGCCCCACCTTTAGGGCTTGGTCCTGCAATTTGAAGTCCTCATC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:58521254|58521580 hsa-miR-141-5p 0 0 1
chr17:58521254|58521580 hsa-miR-141-3p 0 0 1
chr17:58521254|58521580 hsa-miR-146a-5p 0 0 1
chr17:58521254|58521580 hsa-miR-146a-3p 0 0 1
chr17:58521254|58521580 hsa-miR-200a-5p 0 0 1
chr17:58521254|58521580 hsa-miR-200a-3p 0 0 1
chr17:58521254|58521580 hsa-miR-384 0 0 1
chr17:58521254|58521580 hsa-miR-484 0 0 1
chr17:58521254|58521580 hsa-miR-504-5p 0 0 1
chr17:58521254|58521580 hsa-miR-504-3p 0 0 1
chr17:58521254|58521580 hsa-miR-552-5p 0 0 1
chr17:58521254|58521580 hsa-miR-552-3p 0 0 1
chr17:58521254|58521580 hsa-miR-583 0 0 1
chr17:58521254|58521580 hsa-miR-589-5p 0 0 1
chr17:58521254|58521580 hsa-miR-589-3p 0 0 1
chr17:58521254|58521580 hsa-miR-607 0 0 1
chr17:58521254|58521580 hsa-miR-411-5p 0 0 1
chr17:58521254|58521580 hsa-miR-411-3p 0 0 1
chr17:58521254|58521580 hsa-miR-665 0 0 1
chr17:58521254|58521580 hsa-miR-1183 1 0 1
chr17:58521254|58521580 hsa-miR-1236-5p 0 0 1
chr17:58521254|58521580 hsa-miR-1236-3p 0 0 1
chr17:58521254|58521580 hsa-miR-1286 0 0 1
chr17:58521254|58521580 hsa-miR-1253 0 0 1
chr17:58521254|58521580 hsa-miR-548m 0 0 1
chr17:58521254|58521580 hsa-miR-1224-5p 1 0 1
chr17:58521254|58521580 hsa-miR-486-3p 0 0 1
chr17:58521254|58521580 hsa-miR-885-3p 1 0 1
chr17:58521254|58521580 hsa-miR-324-5p 0 0 1
chr17:58521254|58521580 hsa-miR-331-3p 0 0 1
chr17:58521254|58521580 hsa-miR-628-5p 0 0 1
chr17:58521254|58521580 hsa-miR-337-3p 0 0 1
chr17:58521254|58521580 hsa-miR-146b-5p 0 0 1
chr17:58521254|58521580 hsa-miR-516a-3p 0 0 1
chr17:58521254|58521580 hsa-miR-765 1 0 0
chr17:58521254|58521580 hsa-miR-1268a 1 0 0
chr17:58521254|58521580 hsa-miR-3131 1 0 0
chr17:58521254|58521580 hsa-miR-3132 1 0 0
chr17:58521254|58521580 hsa-miR-3138 1 0 0
chr17:58521254|58521580 hsa-miR-4270 1 0 0
chr17:58521254|58521580 hsa-miR-4271 1 0 0
chr17:58521254|58521580 hsa-miR-1268b 1 0 0
chr17:58521254|58521580 hsa-miR-4476 1 0 0
chr17:58521254|58521580 hsa-miR-4502 1 0 0
chr17:58521254|58521580 hsa-miR-4510 1 0 0
chr17:58521254|58521580 hsa-miR-4689 1 0 0
chr17:58521254|58521580 hsa-miR-4721 1 0 0
chr17:58521254|58521580 hsa-miR-4739 1 0 0
chr17:58521254|58521580 hsa-miR-6088 1 0 0
chr17:58521254|58521580 hsa-miR-6127 1 0 0
chr17:58521254|58521580 hsa-miR-6130 1 0 0
chr17:58521254|58521580 hsa-miR-6745 1 0 0
chr17:58521254|58521580 hsa-miR-8060 1 0 0
chr17:58521254|58521580 hsa-miR-8089 1 0 0
chr17:58521254|58521580 hsa-miR-12115 1 0 0
chr17:58521254|58521580 hsa-miR-134-5p 1 0 0
chr17:58521254|58521580 hsa-miR-150-3p 1 0 0
chr17:58521254|58521580 hsa-miR-4433b-3p 1 0 0
chr17:58521254|58521580 hsa-miR-6861-5p 1 0 0
chr17:58521254|58521580 hsa-miR-7106-5p 1 0 0
chr17:58521254|58521580 hsa-miR-6510-5p 1 0 0
chr17:58521254|58521580 hsa-miR-8071 1 0 0
chr17:58521254|58521580 hsa-miR-6089 1 0 0
chr17:58521254|58521580 hsa-miR-6880-5p 1 0 0
chr17:58521254|58521580 hsa-miR-7847-3p 1 0 0
chr17:58521254|58521580 hsa-miR-4695-5p 1 0 0
chr17:58521254|58521580 hsa-miR-197-5p 1 0 0
chr17:58521254|58521580 hsa-miR-3682-3p 1 0 0
chr17:58521254|58521580 hsa-miR-6716-5p 1 0 0
chr17:58521254|58521580 hsa-miR-6871-5p 1 0 0
chr17:58521254|58521580 hsa-miR-6732-5p 1 0 0
chr17:58521254|58521580 hsa-miR-3190-3p 1 0 0
chr17:58521254|58521580 hsa-miR-6798-5p 1 0 0
chr17:58521254|58521580 hsa-miR-2467-3p 1 0 0
chr17:58521254|58521580 hsa-miR-6782-5p 1 0 0
chr17:58521254|58521580 hsa-miR-6810-5p 1 0 0
chr17:58521254|58521580 hsa-miR-6786-5p 1 0 0
chr17:58521254|58521580 hsa-miR-6835-5p 1 0 0
chr17:58521254|58521580 hsa-miR-1226-5p 1 0 0
chr17:58521254|58521580 hsa-miR-1229-5p 1 0 0
chr17:58521254|58521580 hsa-miR-4732-5p 1 0 0
chr17:58521254|58521580 hsa-miR-4787-5p 1 0 0
chr17:58521254|58521580 hsa-miR-6824-5p 1 0 0
chr17:58521254|58521580 hsa-miR-6789-5p 1 0 0
chr17:58521254|58521580 hsa-miR-3162-5p 1 0 0
chr17:58521254|58521580 hsa-miR-7160-3p 1 0 0
chr17:58521254|58521580 hsa-miR-7846-3p 1 0 0
chr17:58521254|58521580 hsa-miR-3158-3p 1 0 0
chr17:58521254|58521580 hsa-miR-6832-5p 1 0 0
chr17:58521254|58521580 hsa-miR-10400-5p 1 0 0
chr17:58521254|58521580 hsa-miR-1207-5p 1 0 0
chr17:58521254|58521580 hsa-miR-6812-5p 1 0 0
chr17:58521254|58521580 hsa-miR-6769a-5p 1 0 0
chr17:58521254|58521580 hsa-miR-6803-5p 1 0 0
chr17:58521254|58521580 hsa-miR-6763-5p 1 0 0
chr17:58521254|58521580 hsa-miR-6797-5p 1 0 0
chr17:58521254|58521580 hsa-miR-6780b-5p 1 0 0
chr17:58521254|58521580 hsa-miR-1909-3p 1 0 0
chr17:58521254|58521580 hsa-miR-6777-5p 1 0 0
chr17:58521254|58521580 hsa-miR-6889-5p 1 0 0
chr17:58521254|58521580 hsa-miR-1910-3p 1 0 0
chr17:58521254|58521580 hsa-miR-6511a-5p 1 0 0
chr17:58521254|58521580 hsa-miR-6856-5p 1 0 0
chr17:58521254|58521580 hsa-miR-7151-3p 1 0 0
chr17:58521254|58521580 hsa-miR-3679-5p 1 0 0
chr17:58521254|58521580 hsa-miR-4646-5p 1 0 0
chr17:58521254|58521580 hsa-miR-6876-5p 1 0 0
chr17:58521254|58521580 hsa-miR-6884-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:58521254|58521580
ORF Type ORF1
Protein Length 33
Nucleotide Length 102
Protein Sequence MSAPSVLTSFFPPVSSSSLLHSRKPGSFPTLIA
Nucleotide Sequence CTGTCAGCACCCTCTGTTCTCACCTCTTTCTTTCCACCTGTATCGTCATCTTCTCTGCTTCATTCTAGGAAGCCAGGGTCCTTTCCCACCCTGATAGCCTGA
CircID chr17:58521254|58521580
ORF Type ORF2
Protein Length 37
Nucleotide Length 114
Protein Sequence MEEVRGACQHPLFSPLSFHLYRHLLCFILGSQGPFPP
Nucleotide Sequence CTGGAAGAGGTTAGGGGTGCCTGTCAGCACCCTCTGTTCTCACCTCTTTCTTTCCACCTGTATCGTCATCTTCTCTGCTTCATTCTAGGAAGCCAGGGTCCTTTCCCACCCTGA
CircID chr17:58521254|58521580
ORF Type ORF3
Protein Length 45
Nucleotide Length 138
Protein Sequence MASTTVLLPITANGMLSWKRLGVPVSTLCSHLFLSTCIVIFSASF
Nucleotide Sequence CTGGCCTCTACTACAGTGTTGCTGCCAATTACTGCAAATGGGATGCTTTCCTGGAAGAGGTTAGGGGTGCCTGTCAGCACCCTCTGTTCTCACCTCTTTCTTTCCACCTGTATCGTCATCTTCTCTGCTTCATTCTAG
CircID chr17:58521254|58521580
ORF Type ORF4
Protein Length 33
Nucleotide Length 102
Protein Sequence MNIEFYSLFLPGRNKIGMGCPRVAPPLGLGPAI
Nucleotide Sequence CTGAATATAGAATTCTACTCCCTTTTTCTACCCGGAAGAAATAAGATAGGAATGGGATGCCCTAGAGTGGCCCCACCTTTAGGGCTTGGTCCTGCAATTTGA
CircID chr17:58521254|58521580
ORF Type ORF5
Protein Length 41
Nucleotide Length 123
Protein Sequence MTGTPNLFQESIPFAVIGSNTVVEARGRRVRGRLYPWGIVE
Nucleotide Sequence CTGACAGGCACCCCTAACCTCTTCCAGGAAAGCATCCCATTTGCAGTAATTGGCAGCAACACTGTAGTAGAGGCCAGAGGGCGGCGAGTTCGGGGTCGACTCTACCCCTGGGGCATCGTGGAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab