CircRNA Information

General Information
circRNA Basic Information
CircID chr17:59265578|59265833
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CCTGGCTCAGGCAATACTCCCACCTCAGCCTCCTGAGTTGTAATAGATGGGACTACAGGTGTGTGCCACCATGCCCAGCTACTTTTTTTGGTATTTTTTGTAGATATGAGGTTTCACCATGTCACCCAGGCTGGTCTCGAACTCCTGGGCTCAAGCAATCCACCTGCCTCAGCCTCTCAAAGTGCTGGGAATACAGGTGTGAGCCACCTTGCCTGGCCAACTTTATACCATTAAATAACAAATCTCCATTCCCTCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:59265578|59265833 hsa-miR-340-5p 0 0 1
chr17:59265578|59265833 hsa-miR-340-3p 0 0 1
chr17:59265578|59265833 hsa-miR-496 0 0 1
chr17:59265578|59265833 hsa-miR-510-5p 0 0 1
chr17:59265578|59265833 hsa-miR-510-3p 0 0 1
chr17:59265578|59265833 hsa-miR-561-5p 0 0 1
chr17:59265578|59265833 hsa-miR-561-3p 0 0 1
chr17:59265578|59265833 hsa-miR-562 0 0 1
chr17:59265578|59265833 hsa-miR-588 0 0 1
chr17:59265578|59265833 hsa-miR-612 0 0 1
chr17:59265578|59265833 hsa-miR-620 0 0 1
chr17:59265578|59265833 hsa-miR-630 0 0 1
chr17:59265578|59265833 hsa-miR-661 0 1 1
chr17:59265578|59265833 hsa-miR-665 1 1 1
chr17:59265578|59265833 hsa-miR-940 0 0 1
chr17:59265578|59265833 hsa-miR-1228-5p 0 0 1
chr17:59265578|59265833 hsa-miR-1228-3p 0 0 1
chr17:59265578|59265833 hsa-miR-1262 0 0 1
chr17:59265578|59265833 hsa-miR-548n 0 0 1
chr17:59265578|59265833 hsa-miR-1270 0 0 1
chr17:59265578|59265833 hsa-miR-1827 0 1 1
chr17:59265578|59265833 hsa-miR-1225-3p 0 0 1
chr17:59265578|59265833 hsa-miR-1283 0 0 1
chr17:59265578|59265833 hsa-miR-485-5p 0 0 1
chr17:59265578|59265833 hsa-miR-142-5p 0 0 1
chr17:59265578|59265833 hsa-miR-342-3p 0 1 1
chr17:59265578|59265833 hsa-miR-362-3p 0 0 1
chr17:59265578|59265833 hsa-miR-1233 0 0 1
chr17:59265578|59265833 hsa-miR-1285 0 0 1
chr17:59265578|59265833 hsa-miR-24 0 0 1
chr17:59265578|59265833 hsa-miR-329 0 0 1
chr17:59265578|59265833 hsa-miR-1201 0 0 1
chr17:59265578|59265833 hsa-miR-220a 0 0 1
chr17:59265578|59265833 hsa-miR-1268a 1 0 0
chr17:59265578|59265833 hsa-miR-4270 1 0 0
chr17:59265578|59265833 hsa-miR-4284 0 1 0
chr17:59265578|59265833 hsa-miR-3929 0 1 0
chr17:59265578|59265833 hsa-miR-3937 1 0 0
chr17:59265578|59265833 hsa-miR-1268b 1 0 0
chr17:59265578|59265833 hsa-miR-4450 1 0 0
chr17:59265578|59265833 hsa-miR-4478 0 1 0
chr17:59265578|59265833 hsa-miR-4510 1 0 0
chr17:59265578|59265833 hsa-miR-4533 1 0 0
chr17:59265578|59265833 hsa-miR-4656 1 1 0
chr17:59265578|59265833 hsa-miR-4683 1 0 0
chr17:59265578|59265833 hsa-miR-5194 1 0 0
chr17:59265578|59265833 hsa-miR-5689 1 1 0
chr17:59265578|59265833 hsa-miR-5787 1 1 0
chr17:59265578|59265833 hsa-miR-6085 1 0 0
chr17:59265578|59265833 hsa-miR-6127 1 0 0
chr17:59265578|59265833 hsa-miR-6129 1 0 0
chr17:59265578|59265833 hsa-miR-6130 1 0 0
chr17:59265578|59265833 hsa-miR-6133 1 0 0
chr17:59265578|59265833 hsa-miR-6134 0 1 0
chr17:59265578|59265833 hsa-miR-12114 0 1 0
chr17:59265578|59265833 hsa-miR-12115 1 0 0
chr17:59265578|59265833 hsa-miR-4433b-3p 1 0 0
chr17:59265578|59265833 hsa-miR-6840-3p 0 1 0
chr17:59265578|59265833 hsa-miR-504-3p 1 0 0
chr17:59265578|59265833 hsa-miR-1247-3p 1 1 0
chr17:59265578|59265833 hsa-miR-4433a-3p 1 0 0
chr17:59265578|59265833 hsa-miR-6765-5p 1 0 0
chr17:59265578|59265833 hsa-miR-6894-5p 1 0 0
chr17:59265578|59265833 hsa-miR-6857-5p 1 0 0
chr17:59265578|59265833 hsa-miR-6854-5p 0 1 0
chr17:59265578|59265833 hsa-miR-6728-5p 1 0 0
chr17:59265578|59265833 hsa-miR-4786-5p 0 1 0
chr17:59265578|59265833 hsa-miR-6089 1 0 0
chr17:59265578|59265833 hsa-miR-3192-5p 1 0 0
chr17:59265578|59265833 hsa-miR-6757-5p 1 0 0
chr17:59265578|59265833 hsa-miR-6873-5p 0 1 0
chr17:59265578|59265833 hsa-miR-4695-5p 1 1 0
chr17:59265578|59265833 hsa-miR-4722-5p 1 0 0
chr17:59265578|59265833 hsa-miR-7160-5p 0 1 0
chr17:59265578|59265833 hsa-miR-4474-3p 1 0 0
chr17:59265578|59265833 hsa-miR-6776-5p 0 1 0
chr17:59265578|59265833 hsa-miR-6849-3p 0 1 0
chr17:59265578|59265833 hsa-miR-6716-5p 1 1 0
chr17:59265578|59265833 hsa-miR-6798-5p 1 0 0
chr17:59265578|59265833 hsa-miR-3126-5p 1 0 0
chr17:59265578|59265833 hsa-miR-193b-5p 1 0 0
chr17:59265578|59265833 hsa-miR-6771-5p 1 0 0
chr17:59265578|59265833 hsa-miR-6749-5p 1 0 0
chr17:59265578|59265833 hsa-miR-6834-5p 0 1 0
chr17:59265578|59265833 hsa-miR-3162-5p 1 0 0
chr17:59265578|59265833 hsa-miR-6802-5p 0 1 0
chr17:59265578|59265833 hsa-miR-4715-5p 0 1 0
chr17:59265578|59265833 hsa-miR-7162-3p 0 1 0
chr17:59265578|59265833 hsa-miR-4742-3p 0 1 0
chr17:59265578|59265833 hsa-miR-4742-5p 0 1 0
chr17:59265578|59265833 hsa-miR-4761-5p 0 1 0
chr17:59265578|59265833 hsa-miR-891a-3p 0 1 0
chr17:59265578|59265833 hsa-miR-3664-3p 0 1 0
chr17:59265578|59265833 hsa-miR-1233-5p 1 1 0
chr17:59265578|59265833 hsa-miR-6778-5p 1 1 0
chr17:59265578|59265833 hsa-miR-6865-5p 0 1 0
chr17:59265578|59265833 hsa-miR-6893-5p 0 1 0
chr17:59265578|59265833 hsa-miR-6803-5p 1 0 0
chr17:59265578|59265833 hsa-miR-6813-5p 1 0 0
chr17:59265578|59265833 hsa-miR-1249-5p 1 0 0
chr17:59265578|59265833 hsa-miR-6722-3p 1 0 0
chr17:59265578|59265833 hsa-miR-6763-5p 1 0 0
chr17:59265578|59265833 hsa-miR-6779-5p 1 0 0
chr17:59265578|59265833 hsa-miR-6808-5p 0 1 0
chr17:59265578|59265833 hsa-miR-4728-5p 1 0 0
chr17:59265578|59265833 hsa-miR-5189-5p 0 1 0
chr17:59265578|59265833 hsa-miR-5196-5p 1 0 0
chr17:59265578|59265833 hsa-miR-6780b-5p 1 0 0
chr17:59265578|59265833 hsa-miR-6862-5p 0 1 0
chr17:59265578|59265833 hsa-miR-4701-3p 0 1 0
chr17:59265578|59265833 hsa-miR-4725-3p 1 0 0
chr17:59265578|59265833 hsa-miR-6846-5p 1 0 0
chr17:59265578|59265833 hsa-miR-6848-5p 1 1 0
chr17:59265578|59265833 hsa-miR-6773-5p 1 1 0
chr17:59265578|59265833 hsa-miR-4747-5p 1 0 0
chr17:59265578|59265833 hsa-miR-6724-5p 1 0 0
chr17:59265578|59265833 hsa-miR-6884-5p 1 1 0
chr17:59265578|59265833 hsa-miR-329-3p 0 1 0
chr17:59265578|59265833 hsa-miR-5588-3p 0 1 0
chr17:59265578|59265833 hsa-miR-4645-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:59265578|59265833
ORF Type ORF1
Protein Length 48
Nucleotide Length 147
Protein Sequence MVFFVDMRFHHVTQAGLELLGSSNPPASASQSAGNTGVSHLAWPTLYH
Nucleotide Sequence TTGGTATTTTTTGTAGATATGAGGTTTCACCATGTCACCCAGGCTGGTCTCGAACTCCTGGGCTCAAGCAATCCACCTGCCTCAGCCTCTCAAAGTGCTGGGAATACAGGTGTGAGCCACCTTGCCTGGCCAACTTTATACCATTAA
CircID chr17:59265578|59265833
ORF Type ORF2
Protein Length 27
Nucleotide Length 84
Protein Sequence MSPRLVSNSWAQAIHLPQPLKVLGIQV
Nucleotide Sequence ATGTCACCCAGGCTGGTCTCGAACTCCTGGGCTCAAGCAATCCACCTGCCTCAGCCTCTCAAAGTGCTGGGAATACAGGTGTGA
CircID chr17:59265578|59265833
ORF Type ORF3
Protein Length 74
Nucleotide Length 222
Protein Sequence MSCNRWDYRCVPPCPATFFGIFCRYEVSPCHPGWSRTPGLKQSTCLSLSKCWEYRCEPPCLANFIPLNNKSPFP
Nucleotide Sequence CTGAGTTGTAATAGATGGGACTACAGGTGTGTGCCACCATGCCCAGCTACTTTTTTTGGTATTTTTTGTAGATATGAGGTTTCACCATGTCACCCAGGCTGGTCTCGAACTCCTGGGCTCAAGCAATCCACCTGCCTCAGCCTCTCAAAGTGCTGGGAATACAGGTGTGAGCCACCTTGCCTGGCCAACTTTATACCATTAAATAACAAATCTCCATTCCCT
CircID chr17:59265578|59265833
ORF Type ORF4
Protein Length 39
Nucleotide Length 120
Protein Sequence MLFNGIKLARQGGSHLYSQHFERLRQVDCLSPGVRDQPG
Nucleotide Sequence TTGTTATTTAATGGTATAAAGTTGGCCAGGCAAGGTGGCTCACACCTGTATTCCCAGCACTTTGAGAGGCTGAGGCAGGTGGATTGCTTGAGCCCAGGAGTTCGAGACCAGCCTGGGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab