CircRNA Information

General Information
circRNA Basic Information
CircID chr17:61405383|61405503
Strand +
CircType exon
Host Gene ENSG00000121068.12;
Algorism CIRI2;
Sequence CACCAGCGGCGCCAGGCCCTGCTCCTTGCCCTCGGCCGCCTCCTTGCGCCCCTCGTCCTTCCTCCGAGCTTCGGCGCGCTCCTTCTCCAGGCTCCTCAGGCCGAACGGGCCGTCCCCGCCG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:61405383|61405503 hsa-miR-1234-3p 0 0 1
chr17:61405383|61405503 hsa-miR-1234 0 0 1
chr17:61405383|61405503 hsa-miR-423-5p 0 1 1
chr17:61405383|61405503 hsa-miR-566 0 0 1
chr17:61405383|61405503 hsa-miR-138 0 0 1
chr17:61405383|61405503 hsa-miR-1254 0 0 1
chr17:61405383|61405503 hsa-miR-663 0 0 1
chr17:61405383|61405503 hsa-miR-638 1 0 0
chr17:61405383|61405503 hsa-miR-661 1 0 0
chr17:61405383|61405503 hsa-miR-663a 0 1 0
chr17:61405383|61405503 hsa-miR-658 1 0 0
chr17:61405383|61405503 hsa-miR-762 1 0 0
chr17:61405383|61405503 hsa-miR-2861 0 1 0
chr17:61405383|61405503 hsa-miR-3196 1 0 0
chr17:61405383|61405503 hsa-miR-3197 1 0 0
chr17:61405383|61405503 hsa-miR-4270 0 1 0
chr17:61405383|61405503 hsa-miR-3937 1 0 0
chr17:61405383|61405503 hsa-miR-4467 1 0 0
chr17:61405383|61405503 hsa-miR-4476 1 1 0
chr17:61405383|61405503 hsa-miR-4479 1 0 0
chr17:61405383|61405503 hsa-miR-4487 1 0 0
chr17:61405383|61405503 hsa-miR-4488 1 0 0
chr17:61405383|61405503 hsa-miR-4516 0 1 0
chr17:61405383|61405503 hsa-miR-4533 1 1 0
chr17:61405383|61405503 hsa-miR-4538 0 1 0
chr17:61405383|61405503 hsa-miR-3960 1 0 0
chr17:61405383|61405503 hsa-miR-4656 1 0 0
chr17:61405383|61405503 hsa-miR-4688 1 0 0
chr17:61405383|61405503 hsa-miR-4689 0 1 0
chr17:61405383|61405503 hsa-miR-4706 1 0 0
chr17:61405383|61405503 hsa-miR-4734 1 0 0
chr17:61405383|61405503 hsa-miR-4739 1 1 0
chr17:61405383|61405503 hsa-miR-4767 1 0 0
chr17:61405383|61405503 hsa-miR-5090 1 0 0
chr17:61405383|61405503 hsa-miR-6081 1 1 0
chr17:61405383|61405503 hsa-miR-6090 1 0 0
chr17:61405383|61405503 hsa-miR-6127 1 0 0
chr17:61405383|61405503 hsa-miR-6133 1 0 0
chr17:61405383|61405503 hsa-miR-8075 1 0 0
chr17:61405383|61405503 hsa-miR-12118 0 1 0
chr17:61405383|61405503 hsa-miR-6734-5p 0 1 0
chr17:61405383|61405503 hsa-miR-6765-5p 1 0 0
chr17:61405383|61405503 hsa-miR-6894-5p 1 0 0
chr17:61405383|61405503 hsa-miR-6880-5p 1 0 0
chr17:61405383|61405503 hsa-miR-7847-3p 1 0 0
chr17:61405383|61405503 hsa-miR-4695-5p 1 1 0
chr17:61405383|61405503 hsa-miR-6746-5p 1 0 0
chr17:61405383|61405503 hsa-miR-6727-5p 1 0 0
chr17:61405383|61405503 hsa-miR-7108-5p 1 0 0
chr17:61405383|61405503 hsa-miR-3605-5p 1 0 0
chr17:61405383|61405503 hsa-miR-6805-5p 1 0 0
chr17:61405383|61405503 hsa-miR-6827-5p 1 0 0
chr17:61405383|61405503 hsa-miR-6881-5p 1 0 0
chr17:61405383|61405503 hsa-miR-1226-5p 1 1 0
chr17:61405383|61405503 hsa-miR-4640-5p 1 0 0
chr17:61405383|61405503 hsa-miR-1908-5p 1 1 0
chr17:61405383|61405503 hsa-miR-4783-5p 1 1 0
chr17:61405383|61405503 hsa-miR-6749-5p 1 0 0
chr17:61405383|61405503 hsa-miR-149-3p 1 0 0
chr17:61405383|61405503 hsa-miR-6789-5p 1 0 0
chr17:61405383|61405503 hsa-miR-7112-5p 1 0 0
chr17:61405383|61405503 hsa-miR-3191-3p 0 1 0
chr17:61405383|61405503 hsa-miR-10400-5p 1 0 0
chr17:61405383|61405503 hsa-miR-1207-5p 1 0 0
chr17:61405383|61405503 hsa-miR-4763-3p 1 1 0
chr17:61405383|61405503 hsa-miR-6778-5p 1 0 0
chr17:61405383|61405503 hsa-miR-6787-5p 1 0 0
chr17:61405383|61405503 hsa-miR-6816-5p 1 0 0
chr17:61405383|61405503 hsa-miR-5001-5p 1 0 0
chr17:61405383|61405503 hsa-miR-6743-5p 1 1 0
chr17:61405383|61405503 hsa-miR-6754-5p 0 1 0
chr17:61405383|61405503 hsa-miR-6815-5p 1 0 0
chr17:61405383|61405503 hsa-miR-6851-5p 1 0 0
chr17:61405383|61405503 hsa-miR-7107-5p 1 1 0
chr17:61405383|61405503 hsa-miR-1249-5p 1 1 0
chr17:61405383|61405503 hsa-miR-6797-5p 1 0 0
chr17:61405383|61405503 hsa-miR-7111-5p 1 0 0
chr17:61405383|61405503 hsa-miR-4728-5p 1 0 0
chr17:61405383|61405503 hsa-miR-5196-5p 1 0 0
chr17:61405383|61405503 hsa-miR-6780b-5p 1 0 0
chr17:61405383|61405503 hsa-miR-6836-5p 1 1 0
chr17:61405383|61405503 hsa-miR-10396a-5p 1 0 0
chr17:61405383|61405503 hsa-miR-1237-5p 1 0 0
chr17:61405383|61405503 hsa-miR-328-5p 1 1 0
chr17:61405383|61405503 hsa-miR-4632-5p 1 0 0
chr17:61405383|61405503 hsa-miR-4649-5p 1 1 0
chr17:61405383|61405503 hsa-miR-4725-3p 1 0 0
chr17:61405383|61405503 hsa-miR-4749-5p 1 1 0
chr17:61405383|61405503 hsa-miR-6729-5p 1 1 0
chr17:61405383|61405503 hsa-miR-6848-5p 1 0 0
chr17:61405383|61405503 hsa-miR-6858-5p 1 0 0
chr17:61405383|61405503 hsa-miR-4723-5p 1 0 0
chr17:61405383|61405503 hsa-miR-939-5p 1 0 0
chr17:61405383|61405503 hsa-miR-10394-3p 1 1 0
chr17:61405383|61405503 hsa-miR-6876-5p 0 1 0
chr17:61405383|61405503 hsa-miR-6891-5p 1 1 0
chr17:61405383|61405503 hsa-miR-4716-3p 1 0 0
chr17:61405383|61405503 hsa-miR-4667-5p 1 1 0
chr17:61405383|61405503 hsa-miR-3184-5p 1 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:61405383|61405503
ORF Type ORF1
Protein Length 34
Nucleotide Length 102
Protein Sequence MLLALGRLLAPLVLPPSFGALLLQAPQAERAVPA
Nucleotide Sequence CTGCTCCTTGCCCTCGGCCGCCTCCTTGCGCCCCTCGTCCTTCCTCCGAGCTTCGGCGCGCTCCTTCTCCAGGCTCCTCAGGCCGAACGGGCCGTCCCCGCC
CircID chr17:61405383|61405503
ORF Type ORF2
Protein Length 32
Nucleotide Length 96
Protein Sequence MPSAASLRPSSFLRASARSFSRLLRPNGPSPP
Nucleotide Sequence TTGCCCTCGGCCGCCTCCTTGCGCCCCTCGTCCTTCCTCCGAGCTTCGGCGCGCTCCTTCTCCAGGCTCCTCAGGCCGAACGGGCCGTCCCCGCCG
CircID chr17:61405383|61405503
ORF Type ORF3
Protein Length 33
Nucleotide Length 99
Protein Sequence MRSLEKERAEARRKDEGRKEAAEGKEQGLAPLV
Nucleotide Sequence CTGAGGAGCCTGGAGAAGGAGCGCGCCGAAGCTCGGAGGAAGGACGAGGGGCGCAAGGAGGCGGCCGAGGGCAAGGAGCAGGGCCTGGCGCCGCTGGTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab