CircRNA Information

General Information
circRNA Basic Information
CircID chr17:62010755|62010925
Strand +
CircType exon
Host Gene ENSG00000108510.8;
Algorism CIRI2;
Sequence CTCAACCACCCCCACTTAGTCCTCACCCTTGTGATGTGGTTGATGAAGGAGTGACTAAAACACCTTCAACTCCTCAGAGTCAACATTTTTATCAAATGCCAACACCAGATCCCTTGGTTCCTTCTAAACCAATGGAAGATAGGATAGACAGTTTGTCCCAGTCTTTCCCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:62010755|62010925 hsa-miR-205-5p 0 0 1
chr17:62010755|62010925 hsa-miR-205-3p 0 0 1
chr17:62010755|62010925 hsa-miR-493-5p 0 0 1
chr17:62010755|62010925 hsa-miR-493-3p 0 0 1
chr17:62010755|62010925 hsa-miR-563 0 0 1
chr17:62010755|62010925 hsa-miR-608 0 0 1
chr17:62010755|62010925 hsa-miR-668-5p 0 0 1
chr17:62010755|62010925 hsa-miR-668-3p 0 0 1
chr17:62010755|62010925 hsa-miR-1293 0 0 1
chr17:62010755|62010925 hsa-miR-1256 0 0 1
chr17:62010755|62010925 hsa-miR-548g-5p 0 0 1
chr17:62010755|62010925 hsa-miR-548g-3p 0 0 1
chr17:62010755|62010925 hsa-miR-1252-5p 0 0 1
chr17:62010755|62010925 hsa-miR-1252-3p 0 0 1
chr17:62010755|62010925 hsa-miR-513b-5p 0 0 1
chr17:62010755|62010925 hsa-miR-513b-3p 0 0 1
chr17:62010755|62010925 hsa-miR-1224-5p 1 1 1
chr17:62010755|62010925 hsa-miR-876-3p 0 0 1
chr17:62010755|62010925 hsa-miR-409-3p 0 0 1
chr17:62010755|62010925 hsa-miR-299-5p 0 0 1
chr17:62010755|62010925 hsa-miR-483-3p 0 0 1
chr17:62010755|62010925 hsa-miR-1302 0 1 1
chr17:62010755|62010925 hsa-miR-548c-3p 0 0 1
chr17:62010755|62010925 hsa-miR-219-1-3p 0 0 1
chr17:62010755|62010925 hsa-miR-499-3p 0 0 1
chr17:62010755|62010925 hsa-miR-571 1 0 0
chr17:62010755|62010925 hsa-miR-638 1 0 0
chr17:62010755|62010925 hsa-miR-760 1 0 0
chr17:62010755|62010925 hsa-miR-2861 1 0 0
chr17:62010755|62010925 hsa-miR-3131 1 0 0
chr17:62010755|62010925 hsa-miR-3153 0 1 0
chr17:62010755|62010925 hsa-miR-4257 1 0 0
chr17:62010755|62010925 hsa-miR-4447 0 1 0
chr17:62010755|62010925 hsa-miR-4463 0 1 0
chr17:62010755|62010925 hsa-miR-4476 1 0 0
chr17:62010755|62010925 hsa-miR-4651 0 1 0
chr17:62010755|62010925 hsa-miR-4654 1 0 0
chr17:62010755|62010925 hsa-miR-4689 1 0 0
chr17:62010755|62010925 hsa-miR-4710 1 1 0
chr17:62010755|62010925 hsa-miR-4721 1 0 0
chr17:62010755|62010925 hsa-miR-7978 1 1 0
chr17:62010755|62010925 hsa-miR-12118 1 0 0
chr17:62010755|62010925 hsa-miR-12119 0 1 0
chr17:62010755|62010925 hsa-miR-12120 0 1 0
chr17:62010755|62010925 hsa-miR-6747-5p 1 0 0
chr17:62010755|62010925 hsa-miR-6782-5p 1 0 0
chr17:62010755|62010925 hsa-miR-6802-5p 0 1 0
chr17:62010755|62010925 hsa-miR-664b-5p 0 1 0
chr17:62010755|62010925 hsa-miR-6814-5p 1 0 0
chr17:62010755|62010925 hsa-miR-6726-5p 1 0 0
chr17:62010755|62010925 hsa-miR-6756-5p 1 1 0
chr17:62010755|62010925 hsa-miR-6803-5p 0 1 0
chr17:62010755|62010925 hsa-miR-6842-5p 0 1 0
chr17:62010755|62010925 hsa-miR-6751-5p 0 1 0
chr17:62010755|62010925 hsa-miR-6846-5p 1 0 0
chr17:62010755|62010925 hsa-miR-6848-5p 1 0 0
chr17:62010755|62010925 hsa-miR-6858-5p 1 0 0
chr17:62010755|62010925 hsa-miR-939-5p 1 0 0
chr17:62010755|62010925 hsa-miR-6739-5p 0 1 0
chr17:62010755|62010925 hsa-miR-6736-5p 1 0 0
chr17:62010755|62010925 hsa-miR-4472 0 1 0
chr17:62010755|62010925 hsa-miR-4667-5p 0 1 0
chr17:62010755|62010925 hsa-miR-769-3p 1 0 0
chr17:62010755|62010925 hsa-miR-5699-3p 0 1 0
chr17:62010755|62010925 hsa-miR-6733-5p 0 1 0
chr17:62010755|62010925 hsa-miR-7161-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:62010755|62010925
ORF Type ORF1
Protein Length 25
Nucleotide Length 75
Protein Sequence MPTPDPLVPSKPMEDRIDSLSQSFP
Nucleotide Sequence ATGCCAACACCAGATCCCTTGGTTCCTTCTAAACCAATGGAAGATAGGATAGACAGTTTGTCCCAGTCTTTCCCA
CircID chr17:62010755|62010925
ORF Type ORF2
Protein Length 31
Nucleotide Length 96
Protein Sequence MGQTVYPIFHWFRRNQGIWCWHLIKMLTLRS
Nucleotide Sequence CTGGGACAAACTGTCTATCCTATCTTCCATTGGTTTAGAAGGAACCAAGGGATCTGGTGTTGGCATTTGATAAAAATGTTGACTCTGAGGAGTTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab