CircNet

General Information

circRNA Basic Information

CircID	chr17:62029541\|62063301
Strand	-
CircType	exon
Host Gene	ENSG00000108510.9;
Algorism	find_circ;CIRI2;DCC;
Sequence	GCTGACTTGACAGGAATTAAGTGGAAAAAATATGTATGGCAAGGCCCAACTTCTGCCCCTATTCTGTTTCCTGTGACAGAAGAAGACCCCATTTTGAGCAGTTTTAGTCGCTGCCTTAAGGCAGATGTACTTGGTGTTTGGCGGCGAGATCAAAGACCTGGAAGAAGAGAATTGTGGATATTTTGGTGGGGTGAAGACCCCAGTTTTGCTGACCTTATTCACCATGACTTATCAGTTGATCCTCAGTCTGTCCAGAAGTGGGTCAAATTTTCTTCAGTATCTGATGGCTTCAACTCCGATAGTACTAGCCACCATGGTGGGAAAATACCCAGAAAATTAGCAAATCATGTGGTGGATAGAGTTTGGCAAGAATGCAATATGAACAGAGCACAGAACAAGAGGAAGTATTCTGCTTCATCAGGTGGTCTATGCGAAGAAGCGACAGCTGCTAAAGTGGCATCCTGGGATTTTGTTGAAGCCACACAAAGAACAAATTGCAGTTGTTTGAG

circRNA Expression in different cancers

circRNA-miRNA-gene regulatory network

Target miRNAs

CircID	miRNA	PITA	miRanda	targetScan
chr17:62029541\|62063301	hsa-miR-198	0	1	1

Target Genes

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Target miRNA Expression in different cancers

circRNA Open Reading Frame (ORF)

CircID	chr17:62029541\|62063301
ORF Type	ORF1
Protein Length	167
Nucleotide Length	501
Protein Sequence	LTGIKWKKYVWQGPTSAPILFPVTEEDPILSSFSRCLKADVLGVWRRDQRPGRRELWIFWWGEDPSFADLIHHDLSVDPQSVQKWVKFSSVSDGFNSDSTSHHGGKIPRKLANHVVDRVWQECNMNRAQNKRKYSASSGGLCEEATAAKVASWDFVEATQRTNCSCL
Nucleotide Sequence	TTGACAGGAATTAAGTGGAAAAAATATGTATGGCAAGGCCCAACTTCTGCCCCTATTCTGTTTCCTGTGACAGAAGAAGACCCCATTTTGAGCAGTTTTAGTCGCTGCCTTAAGGCAGATGTACTTGGTGTTTGGCGGCGAGATCAAAGACCTGGAAGAAGAGAATTGTGGATATTTTGGTGGGGTGAAGACCCCAGTTTTGCTGACCTTATTCACCATGACTTATCAGTTGATCCTCAGTCTGTCCAGAAGTGGGTCAAATTTTCTTCAGTATCTGATGGCTTCAACTCCGATAGTACTAGCCACCATGGTGGGAAAATACCCAGAAAATTAGCAAATCATGTGGTGGATAGAGTTTGGCAAGAATGCAATATGAACAGAGCACAGAACAAGAGGAAGTATTCTGCTTCATCAGGTGGTCTATGCGAAGAAGCGACAGCTGCTAAAGTGGCATCCTGGGATTTTGTTGAAGCCACACAAAGAACAAATTGCAGTTGTTTG

CircID	chr17:62029541\|62063301
ORF Type	ORF2
Protein Length	75
Nucleotide Length	225
Protein Sequence	MVNKVSKTGVFTPPKYPQFSSSRSLISPPNTKYICLKAATKTAQNGVFFCHRKQNRGRSWALPYIFFPLNSCQVS
Nucleotide Sequence	ATGGTGAATAAGGTCAGCAAAACTGGGGTCTTCACCCCACCAAAATATCCACAATTCTCTTCTTCCAGGTCTTTGATCTCGCCGCCAAACACCAAGTACATCTGCCTTAAGGCAGCGACTAAAACTGCTCAAAATGGGGTCTTCTTCTGTCACAGGAAACAGAATAGGGGCAGAAGTTGGGCCTTGCCATACATATTTTTTCCACTTAATTCCTGTCAAGTCAGC

CircID	chr17:62029541\|62063301
ORF Type	ORF3
Protein Length	72
Nucleotide Length	216
Protein Sequence	MYLVFGGEIKDLEEENCGYFGGVKTPVLLTLFTMTYQLILSLSRSGSNFLQYLMASTPIVLATMVGKYPEN*
Nucleotide Sequence	ATGTACTTGGTGTTTGGCGGCGAGATCAAAGACCTGGAAGAAGAGAATTGTGGATATTTTGGTGGGGTGAAGACCCCAGTTTTGCTGACCTTATTCACCATGACTTATCAGTTGATCCTCAGTCTGTCCAGAAGTGGGTCAAATTTTCTTCAGTATCTGATGGCTTCAACTCCGATAGTACTAGCCACCATGGTGGGAAAATACCCAGAAAATTAG

CircID	chr17:62029541\|62063301
ORF Type	ORF4
Protein Length	38
Nucleotide Length	114
Protein Sequence	MKQNTSSCSVLCSYCILAKLYPPHDLLIFWVFSHHGG*
Nucleotide Sequence	ATGAAGCAGAATACTTCCTCTTGTTCTGTGCTCTGTTCATATTGCATTCTTGCCAAACTCTATCCACCACATGATTTGCTAATTTTCTGGGTATTTTCCCACCATGGTGGCTAG

CircID	chr17:62029541\|62063301
ORF Type	ORF5
Protein Length	30
Nucleotide Length	90
Protein Sequence	MGSSSVTGNRIGAEVGPCHTYFFHLIPVKS
Nucleotide Sequence	ATGGGGTCTTCTTCTGTCACAGGAAACAGAATAGGGGCAGAAGTTGGGCCTTGCCATACATATTTTTTCCACTTAATTCCTGTCAAGTCA

RNA Binding Protein (RBP) of circRNA

CircID	RBP	Number of Upstream Sites	Number of Downstream Sites	Number of Circ Exons Sites
chr17:62029541\|62063301	NOP56	1	1	1
chr17:62029541\|62063301	ELAVL1	7	5	3
chr17:62029541\|62063301	DHX9	0	1	0
chr17:62029541\|62063301	SF3B4	1	0	0
chr17:62029541\|62063301	PRPF8	0	4	2
chr17:62029541\|62063301	UPF1	1	0	0
chr17:62029541\|62063301	SRSF10	0	0	1
chr17:62029541\|62063301	FMR1	1	0	12
chr17:62029541\|62063301	FUS	2	1	0
chr17:62029541\|62063301	SRSF7	2	0	2
chr17:62029541\|62063301	SRSF1	0	0	14
chr17:62029541\|62063301	NOP58	1	1	4
chr17:62029541\|62063301	SRSF3	2	1	0
chr17:62029541\|62063301	U2AF1	2	0	4
chr17:62029541\|62063301	U2AF2	16	9	16
chr17:62029541\|62063301	SRSF9	1	0	2
chr17:62029541\|62063301	DDX54	0	4	13
chr17:62029541\|62063301	RBM10	1	0	0
chr17:62029541\|62063301	HNRNPM	3	0	1
chr17:62029541\|62063301	SF3A3	2	0	1
chr17:62029541\|62063301	PTBP1	1	1	3
chr17:62029541\|62063301	HNRNPC	3	7	0
chr17:62029541\|62063301	TRA2A	0	0	13
chr17:62029541\|62063301	HNRNPA2B1	1	0	0
chr17:62029541\|62063301	ZNF184	0	0	3
chr17:62029541\|62063301	HNRNPA1	3	1	0
chr17:62029541\|62063301	DDX3X	1	0	1
chr17:62029541\|62063301	SMNDC1	1	0	2
chr17:62029541\|62063301	MSI1	1	0	0
chr17:62029541\|62063301	ACIN1	0	0	3
chr17:62029541\|62063301	RANGAP1	0	0	1
chr17:62029541\|62063301	LIN28B	0	1	1
chr17:62029541\|62063301	FXR1	0	0	2
chr17:62029541\|62063301	FXR2	0	0	4
chr17:62029541\|62063301	IGF2BP1	0	0	2
chr17:62029541\|62063301	GTF2F1	1	0	0
chr17:62029541\|62063301	IGF2BP3	0	0	4
chr17:62029541\|62063301	IGF2BP2	3	0	8
chr17:62029541\|62063301	HNRNPUL1	1	0	0
chr17:62029541\|62063301	BUD13	1	0	5
chr17:62029541\|62063301	KHSRP	3	1	0
chr17:62029541\|62063301	RBM47	0	1	3
chr17:62029541\|62063301	EIF4G2	1	0	1
chr17:62029541\|62063301	DDX42	0	1	1
chr17:62029541\|62063301	CSTF2T	2	1	3
chr17:62029541\|62063301	BCCIP	0	0	1
chr17:62029541\|62063301	TIA1	0	1	0
chr17:62029541\|62063301	RBM22	0	1	0
chr17:62029541\|62063301	TIAL1	0	1	0
chr17:62029541\|62063301	FBL	0	1	4
chr17:62029541\|62063301	EWSR1	0	0	1
chr17:62029541\|62063301	EIF4A3	4	1	6
chr17:62029541\|62063301	AGO2	0	0	1

CircRNA Information