CircRNA Information

General Information
circRNA Basic Information
CircID chr17:63488773|63489044
Strand -
CircType exon
Host Gene ENSG00000159640.13;
Algorism CIRI2;
Sequence CAGGCTGCCCGGCTCAATGGTGAGTCCCTGCTGCCAACATCACTGGCACTTGGGTCCCTTCATTTTCCTCAAAGAGGTGCTGTGAAACCCCAAGCCTAGGAAAAGGTAGATCCCTGGAGGAGGCAGGTAATGTGGTGTTGGGAGAGCCTGGCTGTGTCCCCTCTGTAGGCTATGTAGATGCAGGGGACTCGTGGAGGTCTATGTACGAGACACCATCCCTGGAGCAAGACCTGGAGCGGCTCTTCCAGGAGCTGCAGCCACTCTACCTCAAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:63488773|63489044 hsa-let-7b-5p 0 0 1
chr17:63488773|63489044 hsa-let-7b-3p 0 0 1
chr17:63488773|63489044 hsa-let-7c-5p 0 0 1
chr17:63488773|63489044 hsa-let-7c-3p 0 0 1
chr17:63488773|63489044 hsa-let-7d-5p 0 0 1
chr17:63488773|63489044 hsa-let-7d-3p 0 0 1
chr17:63488773|63489044 hsa-let-7e-5p 0 0 1
chr17:63488773|63489044 hsa-let-7e-3p 0 0 1
chr17:63488773|63489044 hsa-miR-27a-5p 0 0 1
chr17:63488773|63489044 hsa-miR-27a-3p 0 0 1
chr17:63488773|63489044 hsa-miR-98-5p 0 0 1
chr17:63488773|63489044 hsa-miR-98-3p 0 0 1
chr17:63488773|63489044 hsa-miR-214-5p 0 0 1
chr17:63488773|63489044 hsa-miR-214-3p 0 0 1
chr17:63488773|63489044 hsa-let-7g-5p 0 0 1
chr17:63488773|63489044 hsa-let-7g-3p 0 0 1
chr17:63488773|63489044 hsa-let-7i-5p 0 0 1
chr17:63488773|63489044 hsa-let-7i-3p 0 0 1
chr17:63488773|63489044 hsa-miR-27b-5p 0 0 1
chr17:63488773|63489044 hsa-miR-27b-3p 0 0 1
chr17:63488773|63489044 hsa-miR-150-5p 0 0 1
chr17:63488773|63489044 hsa-miR-150-3p 0 0 1
chr17:63488773|63489044 hsa-miR-376c-5p 0 0 1
chr17:63488773|63489044 hsa-miR-376c-3p 0 0 1
chr17:63488773|63489044 hsa-miR-384 0 0 1
chr17:63488773|63489044 hsa-miR-431-5p 0 0 1
chr17:63488773|63489044 hsa-miR-431-3p 0 0 1
chr17:63488773|63489044 hsa-miR-484 0 0 1
chr17:63488773|63489044 hsa-miR-202-5p 0 0 1
chr17:63488773|63489044 hsa-miR-202-3p 0 0 1
chr17:63488773|63489044 hsa-miR-604 0 0 1
chr17:63488773|63489044 hsa-miR-645 0 0 1
chr17:63488773|63489044 hsa-miR-647 0 1 1
chr17:63488773|63489044 hsa-miR-1301-5p 0 0 1
chr17:63488773|63489044 hsa-miR-1301-3p 0 0 1
chr17:63488773|63489044 hsa-miR-1304-5p 0 0 1
chr17:63488773|63489044 hsa-miR-1304-3p 0 0 1
chr17:63488773|63489044 hsa-miR-1224-5p 0 0 1
chr17:63488773|63489044 hsa-miR-532-3p 1 0 1
chr17:63488773|63489044 hsa-miR-885-3p 0 0 1
chr17:63488773|63489044 hsa-miR-1184 0 1 1
chr17:63488773|63489044 hsa-miR-331-3p 0 0 1
chr17:63488773|63489044 hsa-miR-513a-5p 0 0 1
chr17:63488773|63489044 hsa-miR-7 0 0 1
chr17:63488773|63489044 hsa-miR-323-3p 0 0 1
chr17:63488773|63489044 hsa-let-7a 0 0 1
chr17:63488773|63489044 hsa-let-7f 0 0 1
chr17:63488773|63489044 hsa-miR-608 1 1 0
chr17:63488773|63489044 hsa-miR-623 1 0 0
chr17:63488773|63489044 hsa-miR-638 1 0 0
chr17:63488773|63489044 hsa-miR-657 1 0 0
chr17:63488773|63489044 hsa-miR-764 1 0 0
chr17:63488773|63489044 hsa-miR-1182 1 0 0
chr17:63488773|63489044 hsa-miR-1913 1 0 0
chr17:63488773|63489044 hsa-miR-711 0 1 0
chr17:63488773|63489044 hsa-miR-4270 1 0 0
chr17:63488773|63489044 hsa-miR-3646 0 1 0
chr17:63488773|63489044 hsa-miR-3649 0 1 0
chr17:63488773|63489044 hsa-miR-3684 0 1 0
chr17:63488773|63489044 hsa-miR-3915 0 1 0
chr17:63488773|63489044 hsa-miR-4458 0 1 0
chr17:63488773|63489044 hsa-miR-4475 0 1 0
chr17:63488773|63489044 hsa-miR-4660 1 1 0
chr17:63488773|63489044 hsa-miR-4741 1 0 0
chr17:63488773|63489044 hsa-miR-5572 0 1 0
chr17:63488773|63489044 hsa-miR-6077 0 1 0
chr17:63488773|63489044 hsa-miR-6747-3p 0 1 0
chr17:63488773|63489044 hsa-miR-4726-3p 1 0 0
chr17:63488773|63489044 hsa-miR-6836-3p 0 1 0
chr17:63488773|63489044 hsa-miR-766-3p 1 0 0
chr17:63488773|63489044 hsa-miR-4755-3p 1 1 0
chr17:63488773|63489044 hsa-miR-4655-5p 1 0 0
chr17:63488773|63489044 hsa-miR-6841-3p 1 1 0
chr17:63488773|63489044 hsa-miR-659-3p 1 0 0
chr17:63488773|63489044 hsa-miR-6796-3p 1 0 0
chr17:63488773|63489044 hsa-miR-2467-5p 1 0 0
chr17:63488773|63489044 hsa-miR-4713-5p 0 1 0
chr17:63488773|63489044 hsa-miR-6894-3p 1 0 0
chr17:63488773|63489044 hsa-miR-5001-3p 1 1 0
chr17:63488773|63489044 hsa-miR-7113-3p 1 0 0
chr17:63488773|63489044 hsa-miR-4733-3p 1 0 0
chr17:63488773|63489044 hsa-miR-6864-5p 0 1 0
chr17:63488773|63489044 hsa-miR-6743-3p 0 1 0
chr17:63488773|63489044 hsa-let-7a-5p 0 1 0
chr17:63488773|63489044 hsa-miR-6741-3p 1 0 0
chr17:63488773|63489044 hsa-miR-7113-5p 0 1 0
chr17:63488773|63489044 hsa-miR-6812-3p 1 0 0
chr17:63488773|63489044 hsa-miR-4763-3p 1 0 0
chr17:63488773|63489044 hsa-miR-6819-5p 1 0 0
chr17:63488773|63489044 hsa-miR-6722-3p 1 0 0
chr17:63488773|63489044 hsa-miR-6774-5p 1 0 0
chr17:63488773|63489044 hsa-miR-1909-3p 1 0 0
chr17:63488773|63489044 hsa-miR-4749-5p 1 1 0
chr17:63488773|63489044 hsa-miR-6858-5p 1 0 0
chr17:63488773|63489044 hsa-miR-6831-5p 0 1 0
chr17:63488773|63489044 hsa-miR-365b-5p 1 0 0
chr17:63488773|63489044 hsa-miR-6791-3p 1 0 0
chr17:63488773|63489044 hsa-miR-6792-3p 0 1 0
chr17:63488773|63489044 hsa-miR-6829-3p 1 1 0
chr17:63488773|63489044 hsa-miR-4691-5p 1 1 0
chr17:63488773|63489044 hsa-miR-23b-3p 1 0 0
chr17:63488773|63489044 hsa-miR-122b-3p 0 1 0
chr17:63488773|63489044 hsa-miR-487b-3p 0 1 0
chr17:63488773|63489044 hsa-miR-4536-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:63488773|63489044
ORF Type ORF1
Protein Length 31
Nucleotide Length 93
Protein Sequence MQGTRGGLCTRHHPWSKTWSGSSRSCSHSTS
Nucleotide Sequence ATGCAGGGGACTCGTGGAGGTCTATGTACGAGACACCATCCCTGGAGCAAGACCTGGAGCGGCTCTTCCAGGAGCTGCAGCCACTCTACCTCA
CircID chr17:63488773|63489044
ORF Type ORF2
Protein Length 26
Nucleotide Length 81
Protein Sequence MPGSMVSPCCQHHWHLGPFIFLKEVL
Nucleotide Sequence CTGCCCGGCTCAATGGTGAGTCCCTGCTGCCAACATCACTGGCACTTGGGTCCCTTCATTTTCCTCAAAGAGGTGCTGTGA
CircID chr17:63488773|63489044
ORF Type ORF3
Protein Length 40
Nucleotide Length 120
Protein Sequence MCPLCRLCRCRGLVEVYVRDTIPGARPGAALPGAAATLPQ
Nucleotide Sequence CTGTGTCCCCTCTGTAGGCTATGTAGATGCAGGGGACTCGTGGAGGTCTATGTACGAGACACCATCCCTGGAGCAAGACCTGGAGCGGCTCTTCCAGGAGCTGCAGCCACTCTACCTCAA
CircID chr17:63488773|63489044
ORF Type ORF4
Protein Length 53
Nucleotide Length 159
Protein Sequence MEEAGNVVLGEPGCVPSVGYVDAGDSWRSMYETPSLEQDLERLFQELQPLYLN
Nucleotide Sequence CTGGAGGAGGCAGGTAATGTGGTGTTGGGAGAGCCTGGCTGTGTCCCCTCTGTAGGCTATGTAGATGCAGGGGACTCGTGGAGGTCTATGTACGAGACACCATCCCTGGAGCAAGACCTGGAGCGGCTCTTCCAGGAGCTGCAGCCACTCTACCTCAAC
CircID chr17:63488773|63489044
ORF Type ORF5
Protein Length 53
Nucleotide Length 162
Protein Sequence MQLLEEPLQVLLQGWCLVHRPPRVPCIYIAYRGDTARLSQHHITCLLQGSTFS
Nucleotide Sequence CTGCAGCTCCTGGAAGAGCCGCTCCAGGTCTTGCTCCAGGGATGGTGTCTCGTACATAGACCTCCACGAGTCCCCTGCATCTACATAGCCTACAGAGGGGACACAGCCAGGCTCTCCCAACACCACATTACCTGCCTCCTCCAGGGATCTACCTTTTCCTAG
CircID chr17:63488773|63489044
ORF Type ORF6
Protein Length 47
Nucleotide Length 144
Protein Sequence MHLHSLQRGHSQALPTPHYLPPPGIYLFLGLGFHSTSLRKMKGPKCQ
Nucleotide Sequence CTGCATCTACATAGCCTACAGAGGGGACACAGCCAGGCTCTCCCAACACCACATTACCTGCCTCCTCCAGGGATCTACCTTTTCCTAGGCTTGGGGTTTCACAGCACCTCTTTGAGGAAAATGAAGGGACCCAAGTGCCAGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab