CircRNA Information

General Information
circRNA Basic Information
CircID chr17:63590501|63590698
Strand +
CircType exon
Host Gene ENSG00000136485.13;
Algorism CIRI2;
Sequence CTTCGGGTAGGAGCAGAGCGCAAGGAAACAGCCAACTTTCCCCCAAGAGCACATCCCAAACTGCCTGCCCCAAGGGCTCATCTAACGGTGGAATCACACATATGCCCCTCCATGGAACTCATTCACATAACAGAAAGACACCTGCGGCCTGCAAGTCAAAAGACAACTGCAGGCTACAAGTCCAATACTGCTCAGAAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:63590501|63590698 hsa-miR-511-5p 0 0 1
chr17:63590501|63590698 hsa-miR-511-3p 0 0 1
chr17:63590501|63590698 hsa-miR-596 0 0 1
chr17:63590501|63590698 hsa-miR-625-5p 0 0 1
chr17:63590501|63590698 hsa-miR-625-3p 0 0 1
chr17:63590501|63590698 hsa-miR-635 0 0 1
chr17:63590501|63590698 hsa-miR-647 0 0 1
chr17:63590501|63590698 hsa-miR-1257 0 0 1
chr17:63590501|63590698 hsa-miR-1275 1 1 1
chr17:63590501|63590698 hsa-miR-1225-3p 0 0 1
chr17:63590501|63590698 hsa-miR-486-3p 1 0 1
chr17:63590501|63590698 hsa-miR-423-5p 1 1 1
chr17:63590501|63590698 hsa-miR-502-5p 0 1 1
chr17:63590501|63590698 hsa-miR-767-3p 0 0 1
chr17:63590501|63590698 hsa-miR-769-3p 1 0 1
chr17:63590501|63590698 hsa-miR-450b-3p 0 0 1
chr17:63590501|63590698 hsa-miR-1233 0 0 1
chr17:63590501|63590698 hsa-miR-1269 0 0 1
chr17:63590501|63590698 hsa-miR-129-3p 0 0 1
chr17:63590501|63590698 hsa-miR-663a 1 0 0
chr17:63590501|63590698 hsa-miR-658 1 0 0
chr17:63590501|63590698 hsa-miR-1265 1 0 0
chr17:63590501|63590698 hsa-miR-3141 1 0 0
chr17:63590501|63590698 hsa-miR-3196 1 0 0
chr17:63590501|63590698 hsa-miR-378c 0 1 0
chr17:63590501|63590698 hsa-miR-4260 0 1 0
chr17:63590501|63590698 hsa-miR-3937 1 0 0
chr17:63590501|63590698 hsa-miR-4488 1 0 0
chr17:63590501|63590698 hsa-miR-4498 1 0 0
chr17:63590501|63590698 hsa-miR-4514 1 1 0
chr17:63590501|63590698 hsa-miR-4525 1 0 0
chr17:63590501|63590698 hsa-miR-4658 1 0 0
chr17:63590501|63590698 hsa-miR-4682 1 0 0
chr17:63590501|63590698 hsa-miR-4688 1 0 0
chr17:63590501|63590698 hsa-miR-4692 1 1 0
chr17:63590501|63590698 hsa-miR-4706 1 0 0
chr17:63590501|63590698 hsa-miR-5090 1 0 0
chr17:63590501|63590698 hsa-miR-5572 1 0 0
chr17:63590501|63590698 hsa-miR-3194-3p 0 1 0
chr17:63590501|63590698 hsa-miR-6747-5p 1 0 0
chr17:63590501|63590698 hsa-miR-6765-5p 1 0 0
chr17:63590501|63590698 hsa-miR-16-1-3p 0 1 0
chr17:63590501|63590698 hsa-miR-6799-5p 1 0 0
chr17:63590501|63590698 hsa-miR-1227-5p 1 0 0
chr17:63590501|63590698 hsa-miR-7847-3p 1 0 0
chr17:63590501|63590698 hsa-miR-6890-5p 1 0 0
chr17:63590501|63590698 hsa-miR-6727-5p 1 0 0
chr17:63590501|63590698 hsa-miR-6842-3p 1 0 0
chr17:63590501|63590698 hsa-miR-6721-5p 1 0 0
chr17:63590501|63590698 hsa-miR-23b-5p 1 0 0
chr17:63590501|63590698 hsa-miR-3180-3p 1 0 0
chr17:63590501|63590698 hsa-miR-6796-5p 1 0 0
chr17:63590501|63590698 hsa-miR-23a-5p 1 0 0
chr17:63590501|63590698 hsa-miR-6728-3p 0 1 0
chr17:63590501|63590698 hsa-miR-6835-5p 1 0 0
chr17:63590501|63590698 hsa-miR-7109-5p 1 0 0
chr17:63590501|63590698 hsa-miR-6740-5p 1 1 0
chr17:63590501|63590698 hsa-miR-1229-5p 1 0 0
chr17:63590501|63590698 hsa-miR-4640-5p 1 0 0
chr17:63590501|63590698 hsa-miR-3691-5p 1 0 0
chr17:63590501|63590698 hsa-miR-1228-5p 1 0 0
chr17:63590501|63590698 hsa-miR-6886-5p 0 1 0
chr17:63590501|63590698 hsa-miR-4715-5p 0 1 0
chr17:63590501|63590698 hsa-miR-7113-5p 1 0 0
chr17:63590501|63590698 hsa-miR-196a-5p 1 0 0
chr17:63590501|63590698 hsa-miR-1207-5p 1 0 0
chr17:63590501|63590698 hsa-miR-4763-3p 1 0 0
chr17:63590501|63590698 hsa-miR-6812-5p 1 0 0
chr17:63590501|63590698 hsa-miR-6816-5p 1 0 0
chr17:63590501|63590698 hsa-miR-6870-5p 1 0 0
chr17:63590501|63590698 hsa-miR-6775-5p 1 0 0
chr17:63590501|63590698 hsa-miR-6743-5p 1 0 0
chr17:63590501|63590698 hsa-miR-6752-5p 1 0 0
chr17:63590501|63590698 hsa-miR-6803-5p 1 0 0
chr17:63590501|63590698 hsa-miR-7110-5p 1 0 0
chr17:63590501|63590698 hsa-miR-10401-5p 1 0 0
chr17:63590501|63590698 hsa-miR-1249-5p 1 0 0
chr17:63590501|63590698 hsa-miR-6751-5p 1 0 0
chr17:63590501|63590698 hsa-miR-6763-5p 1 0 0
chr17:63590501|63590698 hsa-miR-6774-5p 1 0 0
chr17:63590501|63590698 hsa-miR-6879-5p 1 0 0
chr17:63590501|63590698 hsa-miR-6780b-5p 1 0 0
chr17:63590501|63590698 hsa-miR-10396b-5p 1 0 0
chr17:63590501|63590698 hsa-miR-1909-3p 1 0 0
chr17:63590501|63590698 hsa-miR-328-5p 1 0 0
chr17:63590501|63590698 hsa-miR-449c-5p 1 0 0
chr17:63590501|63590698 hsa-miR-6738-5p 1 0 0
chr17:63590501|63590698 hsa-miR-6795-5p 1 0 0
chr17:63590501|63590698 hsa-miR-6511b-5p 1 1 0
chr17:63590501|63590698 hsa-miR-30c-1-3p 1 0 0
chr17:63590501|63590698 hsa-miR-1199-5p 1 0 0
chr17:63590501|63590698 hsa-miR-1914-3p 1 0 0
chr17:63590501|63590698 hsa-miR-6891-5p 1 0 0
chr17:63590501|63590698 hsa-miR-378a-3p 0 1 0
chr17:63590501|63590698 hsa-miR-6790-5p 1 0 0
chr17:63590501|63590698 hsa-miR-6724-5p 1 0 0
chr17:63590501|63590698 hsa-miR-6791-5p 1 0 0
chr17:63590501|63590698 hsa-miR-6805-3p 0 1 0
chr17:63590501|63590698 hsa-miR-196b-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:63590501|63590698
ORF Type ORF1
Protein Length 46
Nucleotide Length 138
Protein Sequence MPAPRAHLTVESHICPSMELIHITERHLRPASQKTTAGYKSNTAQN
Nucleotide Sequence CTGCCTGCCCCAAGGGCTCATCTAACGGTGGAATCACACATATGCCCCTCCATGGAACTCATTCACATAACAGAAAGACACCTGCGGCCTGCAAGTCAAAAGACAACTGCAGGCTACAAGTCCAATACTGCTCAGAAC
CircID chr17:63590501|63590698
ORF Type ORF2
Protein Length 32
Nucleotide Length 96
Protein Sequence MPLHGTHSHNRKTPAACKSKDNCRLQVQYCSE
Nucleotide Sequence ATGCCCCTCCATGGAACTCATTCACATAACAGAAAGACACCTGCGGCCTGCAAGTCAAAAGACAACTGCAGGCTACAAGTCCAATACTGCTCAGAA
CircID chr17:63590501|63590698
ORF Type ORF3
Protein Length 33
Nucleotide Length 102
Protein Sequence MSSIGLVACSCLLTCRPQVSFCYVNEFHGGAYV
Nucleotide Sequence CTGAGCAGTATTGGACTTGTAGCCTGCAGTTGTCTTTTGACTTGCAGGCCGCAGGTGTCTTTCTGTTATGTGAATGAGTTCCATGGAGGGGCATATGTGTGA
CircID chr17:63590501|63590698
ORF Type ORF4
Protein Length 27
Nucleotide Length 81
Protein Sequence MSPWGRQFGMCSWGKVGCFLALCSYPK
Nucleotide Sequence ATGAGCCCTTGGGGCAGGCAGTTTGGGATGTGCTCTTGGGGGAAAGTTGGCTGTTTCCTTGCGCTCTGCTCCTACCCGAAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab