CircRNA Information

General Information
circRNA Basic Information
CircID chr17:63830809|63831160
Strand +
CircType exon
Host Gene ENSG00000087191.11;
Algorism CIRI2;
Sequence TTCACTGTCCCCTCCAGAACCCCCCTCCAGCCGCGAGGAGCCGATGGAGTCGATTTCGTCCATGAAGATGATAGATGGAGCATGTTCCCGTGCCATGACAAACAGCTCCCTCACCATTCTTGCCCCTGTGTGGAGGCCGAGCTGGTGTTAGGGAGCTTATTAGCTTATTAGCTCTCTAACCCCCTACCCCTACCTCTTGCTTCTCACATTGCTAGCCATGGTTACCTTCCCCTATGAATTTCTGTACCAGTTCAGAGCCAGAGACACGAATAAAGGTACAGTCCGTATGATGAGCCACAGCCCGGGCCAACAGTGTCTTCCCAGTGCCTGGAGGTCCATACAGCAGCACTCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:63830809|63831160 hsa-let-7b-5p 0 0 1
chr17:63830809|63831160 hsa-let-7b-3p 0 0 1
chr17:63830809|63831160 hsa-let-7c-5p 0 0 1
chr17:63830809|63831160 hsa-let-7c-3p 0 0 1
chr17:63830809|63831160 hsa-let-7d-5p 0 0 1
chr17:63830809|63831160 hsa-let-7d-3p 0 0 1
chr17:63830809|63831160 hsa-let-7e-5p 0 0 1
chr17:63830809|63831160 hsa-let-7e-3p 0 0 1
chr17:63830809|63831160 hsa-miR-31-5p 0 0 1
chr17:63830809|63831160 hsa-miR-31-3p 0 0 1
chr17:63830809|63831160 hsa-miR-98-5p 0 0 1
chr17:63830809|63831160 hsa-miR-98-3p 0 0 1
chr17:63830809|63831160 hsa-miR-183-5p 0 0 1
chr17:63830809|63831160 hsa-miR-183-3p 0 0 1
chr17:63830809|63831160 hsa-miR-187-5p 0 0 1
chr17:63830809|63831160 hsa-miR-187-3p 0 0 1
chr17:63830809|63831160 hsa-let-7g-5p 0 0 1
chr17:63830809|63831160 hsa-let-7g-3p 0 0 1
chr17:63830809|63831160 hsa-let-7i-5p 0 0 1
chr17:63830809|63831160 hsa-let-7i-3p 0 0 1
chr17:63830809|63831160 hsa-miR-149-5p 0 0 1
chr17:63830809|63831160 hsa-miR-149-3p 0 0 1
chr17:63830809|63831160 hsa-miR-328-5p 0 0 1
chr17:63830809|63831160 hsa-miR-328-3p 0 0 1
chr17:63830809|63831160 hsa-miR-326 0 0 1
chr17:63830809|63831160 hsa-miR-376b-5p 0 0 1
chr17:63830809|63831160 hsa-miR-376b-3p 0 0 1
chr17:63830809|63831160 hsa-miR-487a-5p 0 0 1
chr17:63830809|63831160 hsa-miR-487a-3p 0 0 1
chr17:63830809|63831160 hsa-miR-492 0 0 1
chr17:63830809|63831160 hsa-miR-564 0 0 1
chr17:63830809|63831160 hsa-miR-593-5p 0 0 1
chr17:63830809|63831160 hsa-miR-593-3p 0 0 1
chr17:63830809|63831160 hsa-miR-610 0 0 1
chr17:63830809|63831160 hsa-miR-621 0 0 1
chr17:63830809|63831160 hsa-miR-760 1 0 1
chr17:63830809|63831160 hsa-miR-920 0 1 1
chr17:63830809|63831160 hsa-miR-1226-5p 0 0 1
chr17:63830809|63831160 hsa-miR-1226-3p 0 0 1
chr17:63830809|63831160 hsa-miR-1234-3p 0 0 1
chr17:63830809|63831160 hsa-miR-1208 0 0 1
chr17:63830809|63831160 hsa-miR-1299 0 0 1
chr17:63830809|63831160 hsa-miR-1303 0 0 1
chr17:63830809|63831160 hsa-miR-1253 0 0 1
chr17:63830809|63831160 hsa-miR-1234 0 0 1
chr17:63830809|63831160 hsa-miR-512-3p 0 0 1
chr17:63830809|63831160 hsa-miR-490-5p 1 0 1
chr17:63830809|63831160 hsa-miR-330-5p 0 0 1
chr17:63830809|63831160 hsa-miR-582-3p 0 0 1
chr17:63830809|63831160 hsa-miR-220c 0 0 1
chr17:63830809|63831160 hsa-miR-7 0 0 1
chr17:63830809|63831160 hsa-let-7a 0 0 1
chr17:63830809|63831160 hsa-let-7f 0 0 1
chr17:63830809|63831160 hsa-miR-1300 0 0 1
chr17:63830809|63831160 hsa-miR-516b 0 0 1
chr17:63830809|63831160 hsa-miR-24 0 0 1
chr17:63830809|63831160 hsa-miR-376a 0 0 1
chr17:63830809|63831160 hsa-miR-608 1 0 0
chr17:63830809|63831160 hsa-miR-762 1 0 0
chr17:63830809|63831160 hsa-miR-1538 1 1 0
chr17:63830809|63831160 hsa-miR-548q 0 1 0
chr17:63830809|63831160 hsa-miR-2861 1 0 0
chr17:63830809|63831160 hsa-miR-3170 1 0 0
chr17:63830809|63831160 hsa-miR-4267 0 1 0
chr17:63830809|63831160 hsa-miR-4268 0 1 0
chr17:63830809|63831160 hsa-miR-4269 1 0 0
chr17:63830809|63831160 hsa-miR-4271 1 0 0
chr17:63830809|63831160 hsa-miR-4278 1 0 0
chr17:63830809|63831160 hsa-miR-3615 1 0 0
chr17:63830809|63831160 hsa-miR-3652 0 1 0
chr17:63830809|63831160 hsa-miR-4448 1 0 0
chr17:63830809|63831160 hsa-miR-4450 1 0 0
chr17:63830809|63831160 hsa-miR-4458 1 1 0
chr17:63830809|63831160 hsa-miR-4498 1 0 0
chr17:63830809|63831160 hsa-miR-4507 1 0 0
chr17:63830809|63831160 hsa-miR-4510 1 1 0
chr17:63830809|63831160 hsa-miR-1587 1 0 0
chr17:63830809|63831160 hsa-miR-4539 0 1 0
chr17:63830809|63831160 hsa-miR-3976 0 1 0
chr17:63830809|63831160 hsa-miR-4651 1 0 0
chr17:63830809|63831160 hsa-miR-4673 1 0 0
chr17:63830809|63831160 hsa-miR-4675 0 1 0
chr17:63830809|63831160 hsa-miR-4681 0 1 0
chr17:63830809|63831160 hsa-miR-4688 0 1 0
chr17:63830809|63831160 hsa-miR-4689 1 0 0
chr17:63830809|63831160 hsa-miR-4710 0 1 0
chr17:63830809|63831160 hsa-miR-5090 0 1 0
chr17:63830809|63831160 hsa-miR-5194 1 0 0
chr17:63830809|63831160 hsa-miR-5698 1 0 0
chr17:63830809|63831160 hsa-miR-6070 1 0 0
chr17:63830809|63831160 hsa-miR-6085 1 0 0
chr17:63830809|63831160 hsa-miR-6086 1 0 0
chr17:63830809|63831160 hsa-miR-6127 1 0 0
chr17:63830809|63831160 hsa-miR-6129 1 1 0
chr17:63830809|63831160 hsa-miR-6130 0 1 0
chr17:63830809|63831160 hsa-miR-6133 1 1 0
chr17:63830809|63831160 hsa-miR-6165 1 1 0
chr17:63830809|63831160 hsa-miR-7974 0 1 0
chr17:63830809|63831160 hsa-miR-8057 0 1 0
chr17:63830809|63831160 hsa-miR-135a-3p 1 0 0
chr17:63830809|63831160 hsa-miR-150-3p 1 1 0
chr17:63830809|63831160 hsa-miR-511-5p 0 1 0
chr17:63830809|63831160 hsa-miR-4433b-3p 1 0 0
chr17:63830809|63831160 hsa-miR-4747-3p 1 0 0
chr17:63830809|63831160 hsa-miR-6825-5p 1 0 0
chr17:63830809|63831160 hsa-miR-4687-3p 1 0 0
chr17:63830809|63831160 hsa-miR-27a-5p 1 0 0
chr17:63830809|63831160 hsa-miR-6799-5p 1 0 0
chr17:63830809|63831160 hsa-miR-3622a-5p 1 0 0
chr17:63830809|63831160 hsa-miR-6880-5p 1 0 0
chr17:63830809|63831160 hsa-miR-6730-5p 1 0 0
chr17:63830809|63831160 hsa-miR-6890-5p 1 0 0
chr17:63830809|63831160 hsa-miR-6727-5p 1 0 0
chr17:63830809|63831160 hsa-miR-4474-3p 0 1 0
chr17:63830809|63831160 hsa-miR-23b-5p 1 0 0
chr17:63830809|63831160 hsa-miR-659-3p 1 0 0
chr17:63830809|63831160 hsa-miR-6793-5p 1 0 0
chr17:63830809|63831160 hsa-miR-6796-5p 1 0 0
chr17:63830809|63831160 hsa-miR-6732-5p 1 1 0
chr17:63830809|63831160 hsa-miR-23a-5p 1 0 0
chr17:63830809|63831160 hsa-miR-6881-5p 1 1 0
chr17:63830809|63831160 hsa-miR-6782-5p 1 1 0
chr17:63830809|63831160 hsa-miR-6786-5p 1 0 0
chr17:63830809|63831160 hsa-miR-6835-5p 1 0 0
chr17:63830809|63831160 hsa-miR-7109-5p 1 0 0
chr17:63830809|63831160 hsa-miR-204-3p 0 1 0
chr17:63830809|63831160 hsa-miR-1229-5p 1 0 0
chr17:63830809|63831160 hsa-miR-193b-5p 1 1 0
chr17:63830809|63831160 hsa-miR-296-3p 1 0 0
chr17:63830809|63831160 hsa-miR-6834-5p 0 1 0
chr17:63830809|63831160 hsa-miR-6824-5p 1 1 0
chr17:63830809|63831160 hsa-miR-6789-5p 1 0 0
chr17:63830809|63831160 hsa-miR-6802-5p 1 0 0
chr17:63830809|63831160 hsa-miR-6828-5p 1 0 0
chr17:63830809|63831160 hsa-let-7a-5p 0 1 0
chr17:63830809|63831160 hsa-miR-7106-3p 0 1 0
chr17:63830809|63831160 hsa-miR-4999-5p 0 1 0
chr17:63830809|63831160 hsa-miR-20b-3p 1 0 0
chr17:63830809|63831160 hsa-miR-5587-3p 1 0 0
chr17:63830809|63831160 hsa-miR-1273h-5p 1 0 0
chr17:63830809|63831160 hsa-miR-4763-3p 1 0 0
chr17:63830809|63831160 hsa-miR-6787-5p 1 0 0
chr17:63830809|63831160 hsa-miR-6816-5p 1 0 0
chr17:63830809|63831160 hsa-miR-5001-5p 1 0 0
chr17:63830809|63831160 hsa-miR-6726-5p 1 0 0
chr17:63830809|63831160 hsa-miR-6743-5p 1 1 0
chr17:63830809|63831160 hsa-miR-6752-5p 1 0 0
chr17:63830809|63831160 hsa-miR-6756-5p 1 0 0
chr17:63830809|63831160 hsa-miR-6803-5p 1 1 0
chr17:63830809|63831160 hsa-miR-6819-5p 1 0 0
chr17:63830809|63831160 hsa-miR-6842-5p 1 0 0
chr17:63830809|63831160 hsa-miR-6851-5p 1 0 0
chr17:63830809|63831160 hsa-miR-7110-5p 1 0 0
chr17:63830809|63831160 hsa-miR-6751-5p 1 0 0
chr17:63830809|63831160 hsa-miR-6779-5p 1 0 0
chr17:63830809|63831160 hsa-miR-6797-5p 1 0 0
chr17:63830809|63831160 hsa-miR-6879-5p 1 0 0
chr17:63830809|63831160 hsa-miR-7111-5p 1 0 0
chr17:63830809|63831160 hsa-miR-3620-5p 1 0 0
chr17:63830809|63831160 hsa-miR-4728-5p 1 0 0
chr17:63830809|63831160 hsa-miR-5196-5p 1 1 0
chr17:63830809|63831160 hsa-miR-6780b-5p 1 1 0
chr17:63830809|63831160 hsa-miR-4685-5p 1 0 0
chr17:63830809|63831160 hsa-miR-4725-3p 0 1 0
chr17:63830809|63831160 hsa-miR-4745-3p 1 0 0
chr17:63830809|63831160 hsa-miR-4745-5p 1 0 0
chr17:63830809|63831160 hsa-miR-6738-5p 1 0 0
chr17:63830809|63831160 hsa-miR-6794-5p 1 0 0
chr17:63830809|63831160 hsa-miR-6848-5p 1 0 0
chr17:63830809|63831160 hsa-miR-6858-5p 1 0 0
chr17:63830809|63831160 hsa-miR-6883-5p 1 0 0
chr17:63830809|63831160 hsa-miR-6887-5p 1 0 0
chr17:63830809|63831160 hsa-miR-4723-5p 1 0 0
chr17:63830809|63831160 hsa-miR-939-5p 1 0 0
chr17:63830809|63831160 hsa-miR-3940-5p 1 0 0
chr17:63830809|63831160 hsa-miR-4646-5p 1 1 0
chr17:63830809|63831160 hsa-miR-4747-5p 0 1 0
chr17:63830809|63831160 hsa-miR-4716-3p 1 1 0
chr17:63830809|63831160 hsa-miR-6785-5p 1 0 0
chr17:63830809|63831160 hsa-miR-5591-5p 0 1 0
chr17:63830809|63831160 hsa-miR-6724-5p 1 0 0
chr17:63830809|63831160 hsa-miR-10400-3p 1 0 0
chr17:63830809|63831160 hsa-miR-122b-3p 0 1 0
chr17:63830809|63831160 hsa-miR-21-3p 0 1 0
chr17:63830809|63831160 hsa-miR-548ag 0 1 0
chr17:63830809|63831160 hsa-miR-154-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr17:63830809|63831160
ORF Type ORF1
Protein Length 29
Nucleotide Length 90
Protein Sequence MFPCHDKQLPHHSCPCVEAELVLGSLLAY
Nucleotide Sequence ATGTTCCCGTGCCATGACAAACAGCTCCCTCACCATTCTTGCCCCTGTGTGGAGGCCGAGCTGGTGTTAGGGAGCTTATTAGCTTATTAG
CircID chr17:63830809|63831160
ORF Type ORF2
Protein Length 48
Nucleotide Length 147
Protein Sequence MSPPEPPSSREEPMESISSMKMIDGACSRAMTNSSLTILAPVWRPSWC
Nucleotide Sequence CTGTCCCCTCCAGAACCCCCCTCCAGCCGCGAGGAGCCGATGGAGTCGATTTCGTCCATGAAGATGATAGATGGAGCATGTTCCCGTGCCATGACAAACAGCTCCCTCACCATTCTTGCCCCTGTGTGGAGGCCGAGCTGGTGTTAG
CircID chr17:63830809|63831160
ORF Type ORF3
Protein Length 52
Nucleotide Length 156
Protein Sequence MLLTLLAMVTFPYEFLYQFRARDTNKGTVRMMSHSPGQQCLPSAWRSIQQHS
Nucleotide Sequence TTGCTTCTCACATTGCTAGCCATGGTTACCTTCCCCTATGAATTTCTGTACCAGTTCAGAGCCAGAGACACGAATAAAGGTACAGTCCGTATGATGAGCCACAGCCCGGGCCAACAGTGTCTTCCCAGTGCCTGGAGGTCCATACAGCAGCACTCC
CircID chr17:63830809|63831160
ORF Type ORF4
Protein Length 44
Nucleotide Length 135
Protein Sequence MLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGNHG
Nucleotide Sequence CTGCTGTATGGACCTCCAGGCACTGGGAAGACACTGTTGGCCCGGGCTGTGGCTCATCATACGGACTGTACCTTTATTCGTGTCTCTGGCTCTGAACTGGTACAGAAATTCATAGGGGAAGGTAACCATGGCTAG
CircID chr17:63830809|63831160
ORF Type ORF5
Protein Length 35
Nucleotide Length 108
Protein Sequence MDLQALGRHCWPGLWLIIRTVPLFVSLALNWYRNS
Nucleotide Sequence ATGGACCTCCAGGCACTGGGAAGACACTGTTGGCCCGGGCTGTGGCTCATCATACGGACTGTACCTTTATTCGTGTCTCTGGCTCTGAACTGGTACAGAAATTCATAG
CircID chr17:63830809|63831160
ORF Type ORF6
Protein Length 39
Nucleotide Length 117
Protein Sequence MVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSE
Nucleotide Sequence ATGGTGAGGGAGCTGTTTGTCATGGCACGGGAACATGCTCCATCTATCATCTTCATGGACGAAATCGACTCCATCGGCTCCTCGCGGCTGGAGGGGGGTTCTGGAGGGGACAGTGAA
CircID chr17:63830809|63831160
ORF Type ORF7
Protein Length 33
Nucleotide Length 99
Protein Sequence MSWHGNMLHLSSSWTKSTPSAPRGWRGVLEGTV
Nucleotide Sequence TTGTCATGGCACGGGAACATGCTCCATCTATCATCTTCATGGACGAAATCGACTCCATCGGCTCCTCGCGGCTGGAGGGGGGTTCTGGAGGGGACAGTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab