CircRNA Information

General Information
circRNA Basic Information
CircID chr17:63832234|63832406
Strand -
CircType exon
Host Gene ENSG00000108604.14;
Algorism CIRI2;
Sequence CCCATACCTCAGGCCATGCTAGAGAACTGGAGTGTCCCCTCCCCGGCCCAAGCCGCTGGAGAGGCAGCCCTCTGGCATCCCAGGAGATGATGGCGGCCAGAGCCGCTTGCATAGATTGAGGAAAGAAAAGAAGGAGGCACCTAACAGGCTCCCTGAAAACCCCCAACTTACCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:63832234|63832406 hsa-let-7b-5p 0 0 1
chr17:63832234|63832406 hsa-let-7b-3p 0 0 1
chr17:63832234|63832406 hsa-let-7c-5p 0 0 1
chr17:63832234|63832406 hsa-let-7c-3p 0 0 1
chr17:63832234|63832406 hsa-let-7d-5p 0 0 1
chr17:63832234|63832406 hsa-let-7d-3p 0 0 1
chr17:63832234|63832406 hsa-let-7e-5p 0 0 1
chr17:63832234|63832406 hsa-let-7e-3p 0 0 1
chr17:63832234|63832406 hsa-miR-98-5p 0 0 1
chr17:63832234|63832406 hsa-miR-98-3p 0 0 1
chr17:63832234|63832406 hsa-let-7g-5p 0 0 1
chr17:63832234|63832406 hsa-let-7g-3p 0 0 1
chr17:63832234|63832406 hsa-let-7i-5p 0 0 1
chr17:63832234|63832406 hsa-let-7i-3p 0 0 1
chr17:63832234|63832406 hsa-miR-382-5p 0 0 1
chr17:63832234|63832406 hsa-miR-382-3p 0 0 1
chr17:63832234|63832406 hsa-miR-202-5p 0 0 1
chr17:63832234|63832406 hsa-miR-202-3p 0 0 1
chr17:63832234|63832406 hsa-miR-555 0 0 1
chr17:63832234|63832406 hsa-miR-635 0 0 1
chr17:63832234|63832406 hsa-miR-766-5p 0 0 1
chr17:63832234|63832406 hsa-miR-766-3p 0 0 1
chr17:63832234|63832406 hsa-miR-760 0 0 1
chr17:63832234|63832406 hsa-miR-1237-5p 0 0 1
chr17:63832234|63832406 hsa-miR-1237-3p 0 0 1
chr17:63832234|63832406 hsa-miR-1238-5p 0 0 1
chr17:63832234|63832406 hsa-miR-1238-3p 0 0 1
chr17:63832234|63832406 hsa-miR-1248 0 0 1
chr17:63832234|63832406 hsa-miR-1251-5p 0 0 1
chr17:63832234|63832406 hsa-miR-1251-3p 0 0 1
chr17:63832234|63832406 hsa-miR-1258 0 0 1
chr17:63832234|63832406 hsa-miR-1275 0 0 1
chr17:63832234|63832406 hsa-miR-145-5p 0 1 1
chr17:63832234|63832406 hsa-miR-508-5p 0 0 1
chr17:63832234|63832406 hsa-let-7a 0 0 1
chr17:63832234|63832406 hsa-let-7f 0 0 1
chr17:63832234|63832406 hsa-miR-647 0 1 0
chr17:63832234|63832406 hsa-miR-762 1 0 0
chr17:63832234|63832406 hsa-miR-4741 1 0 0
chr17:63832234|63832406 hsa-miR-5572 1 0 0
chr17:63832234|63832406 hsa-miR-5787 1 0 0
chr17:63832234|63832406 hsa-miR-6089 1 0 0
chr17:63832234|63832406 hsa-miR-185-3p 0 1 0
chr17:63832234|63832406 hsa-miR-6827-5p 1 1 0
chr17:63832234|63832406 hsa-miR-6735-3p 1 0 0
chr17:63832234|63832406 hsa-miR-6882-3p 0 1 0
chr17:63832234|63832406 hsa-miR-6740-5p 0 1 0
chr17:63832234|63832406 hsa-miR-193b-5p 1 1 0
chr17:63832234|63832406 hsa-miR-3925-3p 0 1 0
chr17:63832234|63832406 hsa-miR-887-5p 1 0 0
chr17:63832234|63832406 hsa-miR-6741-3p 0 1 0
chr17:63832234|63832406 hsa-miR-3124-3p 0 1 0
chr17:63832234|63832406 hsa-miR-329-5p 0 1 0
chr17:63832234|63832406 hsa-miR-5001-5p 1 0 0
chr17:63832234|63832406 hsa-miR-6752-5p 1 0 0
chr17:63832234|63832406 hsa-miR-6754-5p 0 1 0
chr17:63832234|63832406 hsa-miR-6803-5p 1 0 0
chr17:63832234|63832406 hsa-miR-7110-5p 1 0 0
chr17:63832234|63832406 hsa-miR-6751-5p 1 0 0
chr17:63832234|63832406 hsa-miR-6774-5p 0 1 0
chr17:63832234|63832406 hsa-miR-3620-5p 1 0 0
chr17:63832234|63832406 hsa-miR-4728-5p 0 1 0
chr17:63832234|63832406 hsa-miR-6889-5p 1 1 0
chr17:63832234|63832406 hsa-miR-6791-3p 1 1 0
chr17:63832234|63832406 hsa-miR-2682-3p 0 1 0
chr17:63832234|63832406 hsa-miR-619-5p 0 1 0
chr17:63832234|63832406 hsa-miR-5195-3p 0 1 0
chr17:63832234|63832406 hsa-miR-6506-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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circRNA Open Reading Frame (ORF)
CircID chr17:63832234|63832406
ORF Type ORF1
Protein Length 39
Nucleotide Length 117
Protein Sequence MERQPSGIPGDDGGQSRLHRLRKEKKEAPNRLPENPQLT
Nucleotide Sequence CTGGAGAGGCAGCCCTCTGGCATCCCAGGAGATGATGGCGGCCAGAGCCGCTTGCATAGATTGAGGAAAGAAAAGAAGGAGGCACCTAACAGGCTCCCTGAAAACCCCCAACTTACC

CircID chr17:63832234|63832406
ORF Type ORF2
Protein Length 30
Nucleotide Length 93
Protein Sequence MECPLPGPSRWRGSPLASQEMMAARAACID
Nucleotide Sequence CTGGAGTGTCCCCTCCCCGGCCCAAGCCGCTGGAGAGGCAGCCCTCTGGCATCCCAGGAGATGATGGCGGCCAGAGCCGCTTGCATAGATTGA

CircID chr17:63832234|63832406
ORF Type ORF3
Protein Length 55
Nucleotide Length 165
Protein Sequence MGVFREPVRCLLLFFPQSMQAALAAIISWDARGLPLQRLGPGRGHSSSLAWPEVW
Nucleotide Sequence TTGGGGGTTTTCAGGGAGCCTGTTAGGTGCCTCCTTCTTTTCTTTCCTCAATCTATGCAAGCGGCTCTGGCCGCCATCATCTCCTGGGATGCCAGAGGGCTGCCTCTCCAGCGGCTTGGGCCGGGGAGGGGACACTCCAGTTCTCTAGCATGGCCTGAGGTATGG

CircID chr17:63832234|63832406
ORF Type ORF4
Protein Length 42
Nucleotide Length 129
Protein Sequence MLGASFFSFLNLCKRLWPPSSPGMPEGCLSSGLGRGGDTPVL
Nucleotide Sequence CTGTTAGGTGCCTCCTTCTTTTCTTTCCTCAATCTATGCAAGCGGCTCTGGCCGCCATCATCTCCTGGGATGCCAGAGGGCTGCCTCTCCAGCGGCTTGGGCCGGGGAGGGGACACTCCAGTTCTCTAG

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites