CircRNA Information

General Information
circRNA Basic Information
CircID chr17:65013802|65014002
Strand +
CircType exon
Host Gene ENSG00000120063.8;
Algorism CIRI2;
Sequence CTCCCAGCTGACCTCAGACTAGGCATATTTCAGGCTTTAAATTATTCTACTTTCCAAACTGAATTCTCCTGCAGTGCCAAGTATCAAAGGTGTCCTTAAATACTTGTAGGGATGAGGTTAGGAATATTCAGTTCCAAAACAAGATATCTTCTGTCCGCCTTACATATAGCAGTGACACTTGTTGCCTAACTTTATGGTGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:65013802|65014002 hsa-miR-96-5p 0 0 1
chr17:65013802|65014002 hsa-miR-96-3p 0 0 1
chr17:65013802|65014002 hsa-miR-380-5p 0 0 1
chr17:65013802|65014002 hsa-miR-380-3p 0 0 1
chr17:65013802|65014002 hsa-miR-561-5p 0 0 1
chr17:65013802|65014002 hsa-miR-561-3p 0 0 1
chr17:65013802|65014002 hsa-miR-597-5p 0 0 1
chr17:65013802|65014002 hsa-miR-597-3p 0 0 1
chr17:65013802|65014002 hsa-miR-668-5p 0 0 1
chr17:65013802|65014002 hsa-miR-668-3p 0 0 1
chr17:65013802|65014002 hsa-miR-1271-5p 0 0 1
chr17:65013802|65014002 hsa-miR-1271-3p 0 0 1
chr17:65013802|65014002 hsa-miR-890 0 0 1
chr17:65013802|65014002 hsa-miR-1205 0 0 1
chr17:65013802|65014002 hsa-miR-1286 0 0 1
chr17:65013802|65014002 hsa-miR-1197 0 0 1
chr17:65013802|65014002 hsa-miR-142-5p 0 0 1
chr17:65013802|65014002 hsa-miR-532-5p 0 0 1
chr17:65013802|65014002 hsa-miR-1207-3p 0 0 1
chr17:65013802|65014002 hsa-miR-509-3-5p 0 0 1
chr17:65013802|65014002 hsa-miR-509-5p 0 0 1
chr17:65013802|65014002 hsa-miR-524-3p 0 0 1
chr17:65013802|65014002 hsa-miR-525-3p 0 0 1
chr17:65013802|65014002 hsa-miR-1183 1 0 0
chr17:65013802|65014002 hsa-miR-3141 1 0 0
chr17:65013802|65014002 hsa-miR-3147 1 0 0
chr17:65013802|65014002 hsa-miR-4418 0 1 0
chr17:65013802|65014002 hsa-miR-4477b 0 1 0
chr17:65013802|65014002 hsa-miR-8080 0 1 0
chr17:65013802|65014002 hsa-miR-196a-3p 0 1 0
chr17:65013802|65014002 hsa-miR-6765-5p 1 0 0
chr17:65013802|65014002 hsa-miR-6746-5p 1 0 0
chr17:65013802|65014002 hsa-miR-3190-3p 1 0 0
chr17:65013802|65014002 hsa-miR-4633-5p 0 1 0
chr17:65013802|65014002 hsa-miR-4650-3p 1 0 0
chr17:65013802|65014002 hsa-miR-7856-5p 0 1 0
chr17:65013802|65014002 hsa-miR-3145-3p 0 1 0
chr17:65013802|65014002 hsa-miR-5000-3p 0 1 0
chr17:65013802|65014002 hsa-miR-6513-3p 0 1 0
chr17:65013802|65014002 hsa-miR-183-5p 0 1 0
chr17:65013802|65014002 hsa-miR-6511a-5p 1 0 0
chr17:65013802|65014002 hsa-miR-4646-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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circRNA Open Reading Frame (ORF)
CircID chr17:65013802|65014002
ORF Type ORF1
Protein Length 25
Nucleotide Length 78
Protein Sequence MRLGIFSSKTRYLLSALHIAVTLVA
Nucleotide Sequence ATGAGGTTAGGAATATTCAGTTCCAAAACAAGATATCTTCTGTCCGCCTTACATATAGCAGTGACACTTGTTGCCTAA

CircID chr17:65013802|65014002
ORF Type ORF2
Protein Length 43
Nucleotide Length 132
Protein Sequence MQCQVSKVSLNTCRDEVRNIQFQNKISSVRLTYSSDTCCLTLW
Nucleotide Sequence CTGCAGTGCCAAGTATCAAAGGTGTCCTTAAATACTTGTAGGGATGAGGTTAGGAATATTCAGTTCCAAAACAAGATATCTTCTGTCCGCCTTACATATAGCAGTGACACTTGTTGCCTAACTTTATGGTGA

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites