CircRNA Information

General Information
circRNA Basic Information
CircID chr17:67032958|67033113
Strand -
CircType exon
Host Gene ENSG00000075461.5;
Algorism CIRI2;
Sequence CTCCCCTCCCGCTGCCCCAGAAGTTTCTATCATTCCATGGAGAAAGCTGTGTTCCAATGAATCCTACCTCTTGCCCAGTCCCAGGCAGAGTAAGCAGGGCCCACCTAGGGACCAAGAAAGAGTAGGAAGAAGGGGACGAGCCGGGAGCAAAACCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr17:67032958|67033113 hsa-let-7b-5p 0 0 1
chr17:67032958|67033113 hsa-let-7b-3p 0 0 1
chr17:67032958|67033113 hsa-let-7c-5p 0 0 1
chr17:67032958|67033113 hsa-let-7c-3p 0 0 1
chr17:67032958|67033113 hsa-let-7d-5p 0 0 1
chr17:67032958|67033113 hsa-let-7d-3p 0 0 1
chr17:67032958|67033113 hsa-let-7e-5p 0 0 1
chr17:67032958|67033113 hsa-let-7e-3p 0 0 1
chr17:67032958|67033113 hsa-miR-31-5p 0 0 1
chr17:67032958|67033113 hsa-miR-31-3p 0 0 1
chr17:67032958|67033113 hsa-miR-98-5p 0 0 1
chr17:67032958|67033113 hsa-miR-98-3p 0 0 1
chr17:67032958|67033113 hsa-let-7g-5p 0 0 1
chr17:67032958|67033113 hsa-let-7g-3p 0 0 1
chr17:67032958|67033113 hsa-let-7i-5p 0 0 1
chr17:67032958|67033113 hsa-let-7i-3p 0 0 1
chr17:67032958|67033113 hsa-miR-136-5p 0 0 1
chr17:67032958|67033113 hsa-miR-136-3p 0 0 1
chr17:67032958|67033113 hsa-miR-206 0 0 1
chr17:67032958|67033113 hsa-miR-133b 0 0 1
chr17:67032958|67033113 hsa-miR-578 0 0 1
chr17:67032958|67033113 hsa-miR-612 0 1 1
chr17:67032958|67033113 hsa-miR-613 0 0 1
chr17:67032958|67033113 hsa-miR-637 0 0 1
chr17:67032958|67033113 hsa-miR-661 0 1 1
chr17:67032958|67033113 hsa-miR-541-5p 0 0 1
chr17:67032958|67033113 hsa-miR-541-3p 0 0 1
chr17:67032958|67033113 hsa-miR-1291 0 0 1
chr17:67032958|67033113 hsa-miR-1248 0 0 1
chr17:67032958|67033113 hsa-miR-296-5p 0 0 1
chr17:67032958|67033113 hsa-miR-486-3p 0 0 1
chr17:67032958|67033113 hsa-miR-885-3p 0 1 1
chr17:67032958|67033113 hsa-miR-654-5p 0 0 1
chr17:67032958|67033113 hsa-miR-515-5p 0 0 1
chr17:67032958|67033113 hsa-miR-664 0 0 1
chr17:67032958|67033113 hsa-let-7a 0 0 1
chr17:67032958|67033113 hsa-let-7f 0 0 1
chr17:67032958|67033113 hsa-miR-1285 0 0 1
chr17:67032958|67033113 hsa-miR-1 0 0 1
chr17:67032958|67033113 hsa-miR-1254 0 0 1
chr17:67032958|67033113 hsa-miR-133a 0 0 1
chr17:67032958|67033113 hsa-miR-6860 0 1 0
chr17:67032958|67033113 hsa-miR-8052 0 1 0
chr17:67032958|67033113 hsa-miR-6728-5p 1 0 0
chr17:67032958|67033113 hsa-miR-6875-3p 0 1 0
chr17:67032958|67033113 hsa-miR-877-3p 0 1 0
chr17:67032958|67033113 hsa-miR-6772-3p 1 1 0
chr17:67032958|67033113 hsa-miR-7106-3p 1 0 0
chr17:67032958|67033113 hsa-miR-5088-3p 1 1 0
chr17:67032958|67033113 hsa-miR-6853-3p 0 1 0
chr17:67032958|67033113 hsa-miR-3173-5p 0 1 0
chr17:67032958|67033113 hsa-miR-19b-1-5p 1 0 0
chr17:67032958|67033113 hsa-miR-6885-3p 1 1 0
chr17:67032958|67033113 hsa-miR-550b-3p 0 1 0
chr17:67032958|67033113 hsa-miR-6775-5p 0 1 0
chr17:67032958|67033113 hsa-miR-6756-5p 1 0 0
chr17:67032958|67033113 hsa-miR-6815-5p 1 0 0
chr17:67032958|67033113 hsa-miR-4728-5p 0 1 0
chr17:67032958|67033113 hsa-miR-5189-5p 0 1 0
chr17:67032958|67033113 hsa-miR-4649-5p 1 1 0
chr17:67032958|67033113 hsa-miR-6848-5p 1 0 0
chr17:67032958|67033113 hsa-miR-3187-5p 0 1 0
chr17:67032958|67033113 hsa-miR-3199 0 1 0
chr17:67032958|67033113 hsa-miR-6799-3p 0 1 0
chr17:67032958|67033113 hsa-miR-6724-5p 1 0 0
chr17:67032958|67033113 hsa-miR-6791-5p 1 1 0
chr17:67032958|67033113 hsa-miR-6756-3p 0 1 0
chr17:67032958|67033113 hsa-miR-6775-3p 1 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr17:67032958|67033113
ORF Type ORF1
Protein Length 36
Nucleotide Length 108
Protein Sequence MCSNESYLLPSPRQSKQGPPRDQERVGRRGRAGSKT
Nucleotide Sequence CTGTGTTCCAATGAATCCTACCTCTTGCCCAGTCCCAGGCAGAGTAAGCAGGGCCCACCTAGGGACCAAGAAAGAGTAGGAAGAAGGGGACGAGCCGGGAGCAAAACC
CircID chr17:67032958|67033113
ORF Type ORF2
Protein Length 37
Nucleotide Length 114
Protein Sequence MPQKFLSFHGESCVPMNPTSCPVPGRVSRAHLGTKKE
Nucleotide Sequence CTGCCCCAGAAGTTTCTATCATTCCATGGAGAAAGCTGTGTTCCAATGAATCCTACCTCTTGCCCAGTCCCAGGCAGAGTAAGCAGGGCCCACCTAGGGACCAAGAAAGAGTAG
CircID chr17:67032958|67033113
ORF Type ORF3
Protein Length 28
Nucleotide Length 87
Protein Sequence MLPARPLLPTLSWSLGGPCLLCLGLGKR
Nucleotide Sequence TTGCTCCCGGCTCGTCCCCTTCTTCCTACTCTTTCTTGGTCCCTAGGTGGGCCCTGCTTACTCTGCCTGGGACTGGGCAAGAGGTAG
CircID chr17:67032958|67033113
ORF Type ORF4
Protein Length 38
Nucleotide Length 114
Protein Sequence MVPRWALLTLPGTGQEVGFIGTQLSPWNDRNFWGSGRG
Nucleotide Sequence TTGGTCCCTAGGTGGGCCCTGCTTACTCTGCCTGGGACTGGGCAAGAGGTAGGATTCATTGGAACACAGCTTTCTCCATGGAATGATAGAAACTTCTGGGGCAGCGGGAGGGGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab